Characteristics of RDGA: Mutants with retinal degeneration in Drosophila

We have characterized mutants of the gene retinal degeneration A (rdgA) in Drosophila using histology, optics, deep pseudopupil techniques, electrophysiology and phototactic testing. Earlier work showed that different mutant alleles differed in whether R7 and R8 (2 receptor types of 8 cells per facet in the compound eye) degenerated. We studied a weakly degenerate allele (without much $\text{R}\text{7}\text{8}$ degeneration), namely rdgA^PC47, and a strongly mutant allele, rdgA^BS12. Our techniques all show that degeneration is more severe in rdgA^BS12, not only for $\text{R}\text{7}\text{8}$ but for R1-6 and ocelli as well. We confirm that $\text{R}\text{7}\text{8}$ degenerates more slowly than R1–6 in rdgA^PC47. Mutants of a different gene, namely rdgB, have been widely used in studies of the visual system. Although retinal degeneration is severe in rdgA, the first synaptic neuropil in rdgA remains much more nearly normal than it does in rdgB.     

The Phosphatidylinositol Transfer Protein Domain of Drosophila Retinal Degeneration B Protein Is Essential for Photoreceptor Cell Survival and Recovery from Light Stimulation

The Drosophila retinal degeneration B (rdgB) gene encodes an integral membrane protein involved in phototransduction and prevention of retinal degeneration. RdgB represents a nonclassical phosphatidylinositol transfer protein (PITP) as all other known PITPs are soluble polypeptides. Our data demonstrate roles for RdgB in proper termination of the phototransduction light response and dark recovery of the photoreceptor cells. Expression of RdgB''s PITP domain as a soluble protein (RdgB-PITP) in rdgB² mutant flies is sufficient to completely restore the wild-type electrophysiological light response and prevent the degeneration. However, introduction of the T59E mutation, which does not affect RdgB-PITP''s phosphatidylinositol (PI) and phosphatidycholine (PC) transfer in vitro, into the soluble (RdgB-PITP-T59E) or full-length (RdgB-T59E) proteins eliminated rescue of retinal degeneration in rdgB² flies, while the light response was partially maintained. Substitution of the rat brain PITPα, a classical PI transfer protein, for RdgB''s PITP domain (PITPα or PITPα-RdgB chimeric protein) neither restored the light response nor maintained retinal integrity when expressed in rdgB² flies. Therefore, the complete repertoire of essential RdgB functions resides in RdgB''s PITP domain, but other PITPs possessing PI and/or PC transfer activity in vitro cannot supplant RdgB function in vivo. Expression of either RdgB-T59E or PITPα-RdgB in rdgB ⁺ flies produced a dominant retinal degeneration phenotype. Whereas RdgB-T59E functioned in a dominant manner to significantly reduce steady-state levels of rhodopsin, PITPα-RdgB was defective in the ability to recover from prolonged light stimulation and caused photoreceptor degeneration through an unknown mechanism. This in vivo analysis of PITP function in a metazoan system provides further insights into the links between PITP dysfunction and an inherited disease in a higher eukaryote.The Drosophila retinal degeneration B protein (RdgB)¹ plays a critical role in the fly photoreceptor cell. The rdgB mutant phenotype is characterized by retinal degeneration whose onset, while discernible in dark-reared flies, is greatly accelerated by raising the flies in light (Harris and Stark, 1977; Stark et al., 1983). Typically, rdgB mutant flies begin to exhibit the morphological hallmarks of photoreceptor cell degeneration several days after eclosion (Harris and Stark, 1977; Stark et al., 1983). In addition, these mutant flies exhibit an abnormal light response, as recorded by the rapid deterioration of the electroretinogram (ERG), shortly after the fly''s initial exposure to light. This ERG defect is manifested before any obvious physical signs of retinal degeneration (Harris and Stark, 1977), which suggests that the defect in the light response may precipitate the course of retinal degeneration.In the photoreceptor cell, RdgB localizes to both the axon and the subrhabdomeric cisternae (SRC) (Vihtelic et al., 1993; Suzuki and Hirosawa, 1994). The SRC is an extension of the endoplasmic reticulum that functions both as an intracellular Ca²⁺ store and a compartment through which rhodopsin traffics en route to the rhabdomere (Walz, 1982; Matsumoto-Suzuki et al., 1989; Suzuki and Hiosawa, 1991). Thus, RdgB is the first identified protein required for visual transduction that is not localized in the photoreceptor rhabdomere. Genetic epistasis analyses suggest RdgB functions downstream of both rhodopsin and phospholipase C (PLC) in the visual transduction cascade as both the ninaE (encoding the opsin expressed in photoreceptor cells R1-6 [O''Tousa et al., 1985; Zuker et al., 1985]) and norpA (encoding phospholipase C [Bloomquist et al., 1988]) mutations suppress the rdgB-dependent, light-enhanced retinal degeneration (Harris and Stark, 1977; Stark et al., 1983). Consistent with this view, constitutive activation of the Drosophila G protein transducin analogue (DGq), either by application of nonhydrolyzable GTP analogues or by expression of a constitutively activated Gα subunit (Dgq1), effects a rapid degeneration of rdgB retinas in the absence of light (Rubinstein et al., 1989; Lee et al., 1994). RdgB apparently functions downstream of the inaC-encoded protein kinase C (PKC) because: (a) application of phorbol ester to rdgB mutant retinas, which presumably activates the inaC-encoded PKC, stimulates retinal degeneration in the absence of light (Minke et al., 1990); and (b) the rdgB retinal degeneration is weakly suppressed by the inaC mutation (Smith et al., 1991). Thus, the available evidence identifies an execution point for RdgB downstream of PKC in the visual transduction cascade.RdgB is a 116-kD membrane polypeptide with six potential transmembrane domains (Vihtelic et al., 1991). Additionally, the amino-terminal 281 RdgB residues share 42% amino acid identity with the rat brain phosphatidylinositol (PI) transfer protein α isoform (PITPα) (Vihtelic et al., 1993). Whereas PITPs are operationally defined by their ability to catalyze the transfer of either PI or phosphatidylcholine (PC) monomers between membrane bilayers in vitro (Bankaitis et al., 1990; Cleves et al., 1991; Wirtz, 1991), how the phospholipid transfer activity pertains to in vivo function is less clear. The yeast PITP (Sec14p) uses its PI and PC binding activities in two independent, yet complementary, ways that serve to preserve a Golgi pool of diacylglycerol that is critical for the biogenesis of Golgi-derived secretory vesicles (Kearns et al., 1997). Reconstitution studies suggest that mammalian PITPs play important roles in PLC-mediated inositol signaling, ATP-dependent, Ca²⁺-activated secretion, and constitutive secretion from the trans-Golgi network (Hay and Martin, 1993, 1995; Thomas et al., 1993, 1995; Ohashi et al., 1995). However, because the PITP requirement for these processes is generally satisfied by any PITP (even those lacking any primary sequence identity), the physiological relevance of these PITP involvements remains to be determined (Skinner et al., 1993; Cunningham et al., 1995; Ohashi et al., 1995; Alb et al., 1996). The recent finding that the mouse vibrator mutation represents a hypomorphic mutation in the pitpn gene, which encodes PITPα, indicates that PITP function is important to neuronal function (Hamilton et al., 1997). RdgB''s PITP domain (when expressed as a soluble protein in Escherichia coli) is able to effect intermembrane transfer of PI in vitro (Vihtelic et al., 1993). Unlike all previously characterized PITPs, which are 32–35-kD soluble proteins (Bankaitis et al., 1989; Cleves et al., 1991; Wirtz, 1991), RdgB is a large integral membrane protein. In spite of postulated in vivo activities for PITPs, the function of RdgB in the photoreceptor cell remains unknown. Recently, vertebrate orthologues of the rdgB gene were identified in mice, bovines, and humans (Chang et al., 1997). Expression of the mouse rdgB cDNA in rdgB² null mutant flies resulted in the elimination of the retinal degeneration and complete restoration of the wild-type ERG light response (Chang et al., 1997). Thus, the Drosophila RdgB protein defines a new class of functionally equivalent transmembrane PITPs.In this work, we analyzed RdgB''s involvement in the Drosophila phototransduction cascade and the mechanism by which it prevents the onset of retinal degeneration. This represents the first in vivo analysis of the transmembrane PITP class, and we report several novel and unanticipated aspects of RdgB function. We demonstrate that the complete repertoire of RdgB functions essential for normal phototransduction reside in the PITP domain. Expression of this domain as a soluble polypeptide fully complements the rdgB² null allele. Yet, other PITPs that possess PI and/ or PC transfer activities in vitro cannot substitute for RdgB in the photoreceptor cell. Whereas the recessive rdgB² null mutation demonstrates an essential role for RdgB in proper termination of the ERG light response and dark recovery of the photoreceptor cell, one novel dominant rdgB mutation affects the maintenance of steady- state rhodopsin levels in photoreceptor cells. Another dominant rdgB mutation induces retinal degeneration and compromises the rapid regeneration of a wild-type ERG light-response amplitude subsequent to multiple or prolonged light exposure. Taken together, these data indicate an underlying complexity to the mechanism of RdgB function and its role in the photoreceptor cell that is not easily reconciled with a simple role in potentiating signal transduction via phosphoinositide-driven signaling pathways.     

Complementation of an Erwinia carotovora subsp. carotovora protease mutant with a protease-encoding cosmid

Summary We report the complementation of a genetic lesion in the genome of Erwinia carotovora subsp. carotovora (Ecc), a pathogenic bacterium that incites soft rot of plants. A Sau3AI genomic library of Ecc was constructed using the conjugal cosmid pLAFR-3 as a vector. Sixteen cosmid clones encoding various plant tissue-degrading enzymes were identified, including a proteolytic clone, five cellulolytic clones, and ten pectolytic clones. We detected a mutant of Ecc with no proteolytic activity following transposon mutagenesis with an unstable Tn5-carrying plasmid. Conjugal transfer of the protease-encoding cosmid to this mutant restored near-wildtype extracellular protease production. Further manipulation and study of genes encoding pathogenic determinants in Ecc will be possible using this system.     

Salmonella enterica delivers its genotoxin through outer membrane vesicles secreted from infected cells

Cytolethal‐distending toxins (CDTs) belong to a family of DNA damage inducing exotoxins that are produced by several Gram‐negative bacteria. Salmonella enterica serovar Typhi expresses its CDT (named as Typhoid toxin) only in the Salmonella‐containing vacuole (SCV) of infected cells, which requires its export for cell intoxication. The mechanisms of secretion, release in the extracellular space and uptake by bystander cells are poorly understood. We have addressed these issues using a recombinant S. Typhimurium strain, MC71‐CDT, where the genes encoding for the PltA, PltB and CdtB subunits of the Typhoid toxin are expressed under control of the endogenous promoters. MC71‐CDT grown under conditions that mimic the SCV secreted the holotoxin in outer membrane vesicles (OMVs). Epithelial cells infected with MC71‐CDT also secreted OMVs‐like vesicles. The release of these extracellular vesicles required an intact SCV and relied on anterograde transport towards the cellular cortex on microtubule and actin tracks. Paracrine internalization of Typhoid toxin‐loaded OMVs by bystander cells was dependent on dynamin‐1, indicating active endocytosis. The subsequent induction of DNA damage required retrograde transport of the toxin through the Golgi complex. These data provide new insights on the mode of secretion of exotoxins by cells infected with intracellular bacteria.     

DMSO is a strong inducer of DNA hydroxymethylation in pre-osteoblastic MC3T3-E1 cells

Artificial induction of active DNA demethylation appears to be a possible and useful strategy in molecular biology research and therapy development. Dimethyl sulfoxide (DMSO) was shown to cause phenotypic changes in embryonic stem cells altering the genome-wide DNA methylation profiles. Here we report that DMSO increases global and gene-specific DNA hydroxymethylation levels in pre-osteoblastic MC3T3-E1 cells. After 1 day, DMSO increased the expression of genes involved in DNA hydroxymethylation (TET) and nucleotide excision repair (GADD45) and decreased the expression of genes related to DNA methylation (Dnmt1, Dnmt3b, Hells). Already 12 hours after seeding, before first replication, DMSO increased the expression of the pro-apoptotic gene Fas and of the early osteoblastic factor Dlx5, which proved to be Tet1 dependent. At this time an increase of 5-methyl-cytosine hydroxylation (5-hmC) with a concomitant loss of methyl-cytosines on Fas and Dlx5 promoters as well as an increase in global 5-hmC and loss in global DNA methylation was observed. Time course-staining of nuclei suggested euchromatic localization of DMSO induced 5-hmC. As consequence of induced Fas expression, caspase 3/7 and 8 activities were increased indicating apoptosis. After 5 days, the effect of DMSO on promoter- and global methylation as well as on gene expression of Fas and Dlx5 and on caspases activities was reduced or reversed indicating down-regulation of apoptosis. At this time, up regulation of genes important for matrix synthesis suggests that DMSO via hydroxymethylation of the Fas promoter initially stimulates apoptosis in a subpopulation of the heterogeneous MC3T3-E1 cell line, leaving a cell population of extra-cellular matrix producing osteoblasts.