Application of lat gene disruption to increase the clavulanic acid production of Streptomyces clavuligerus

A 1.7 kb fragment of lat was obtained from Streptomyces clavuligerus NRRL 3585, and recombinant plasmid pKC1139-lat, which was used to disrupt the lat gene was constructed. pKC1139-lat was introduced into S. clavuligerus by bi-parental conjugation from Escherichia coli ET12567 to S. clavuligerus. The apramcin-resistant transformants were obtained and through homogeneous single-crossover between recombinant plasmid pKC1139-lat and the S. clavuligerus chromosome lat disrupted mutant strains were obtained. The genome of S. clavuligerus NRRL 3585 and the lat disrupted mutants were analyzed by PCR technique, the bioactivity of cephamycin C in the two kinds of strains were also tested. Both results proved that lat was disrupted by the insertion of pKC1139 in the lat disrupted mutants. And the production of clavulanic acid of these two kinds of strains were analyzed by HPLC with different incubation time interval (96 and 120 h), and the yield in the lat mutants was approximately 2.6 fold higher at their highest production point.     

Overexpression of serine alkaline protease encoding gene in Bacillus species: performance analyses

Bacillus species carrying subC gene encoding serine alkaline protease (SAP) enzyme were developed in order to increase the yield and selectivity in the bioprocess for SAP production. For this aim, subC gene was cloned into pHV1431 Escherichia coli–Bacillus shuttle vector, and transferred into nine host Bacillus species, i.e. B. alvei, B. amyloliquefaciens, B. badius, B. cereus, B. coagulans, B. firmus, B. licheniformis, B. sphaericus and B. subtilis. The influence of the host Bacillus species on SAP production on a defined medium with glucose was investigated in bioreactor systems. For each of the recombinant (r-) Bacillus species, effects of initial glucose concentration on cell growth and SAP production were investigated; and, physiological differences and similarities between the wild-type and r-Bacillus species are discussed. The highest biomass concentration was obtained with r-B. coagulans as 3.8 kg m⁻³ at the initial glucose concentration of C_Go=20 kg m⁻³ and the highest volumetric SAP activity was obtained with r-B. amyloliquefaciens as 1650 U cm⁻³ at C_Go=20 kg m⁻³. Overall SAP activity per amount of substrate consumed was the highest for r-B. sphaericus (137 U g⁻¹ cm⁻³) and r-B. licheniformis (130 U g⁻¹ cm⁻³). Among the r-Bacillus species the highest activity increase compared to the wild types was obtained with r-B. sphaericus while the lowest increase was obtained with r-B. amyloliquefaciens and r-B. licheniformis due to high SAP production potential of the wild-type strains. During storage of the host microorganisms, r-B. alvei and r-B. amyloliquefaciens were not able to bear the recombinant plasmid, probably, due to the restriction enzymes synthesized. Due to the highest stable volumetric activities r-B. licheniformis (950 U cm⁻³) and r-B. sphaericus (820 U cm⁻³) appear to be the favorable hosts for the production of SAP. All the r-Bacillus species excreted organic acids oxaloacetic and succinic acids, but, none excreted the amino acid valine. The variations in by-product distributions with each recombinant organism were also discussed.     

The ClosTron: a universal gene knock-out system for the genus Clostridium

Progress in exploiting clostridial genome information has been severely impeded by a general lack of effective methods for the directed inactivation of specific genes. Those few mutants that have been generated have been almost exclusively derived by single crossover integration of a replication-deficient or defective plasmid by homologous recombination. The mutants created are therefore unstable. Here we have adapted a mutagenesis system based on the mobile group II intron from the ltrB gene of Lactococcus lactis (Ll.ltrB) to function in clostridial hosts. Integrants are readily selected on the basis of acquisition of resistance to erythromycin, and are generated from start to finish in as little as 10 to 14 days. Unlike single crossover plasmid integrants, the mutants are extremely stable. The system has been used to make 6 mutants of Clostridium acetobutylicum and 5 of Clostridium difficile, exceeding the number of published mutants ever generated in these species. Genes have also been inactivated for the first time in Clostridium botulinum and Clostridium sporogenes, suggesting the system will be universally applicable to the genus. The procedure is highly efficient and reproducible, and should revolutionize functional genomic studies in clostridia.     

棘孢木霉嗜铁素sidA基因敲除及表型分析

明确棘孢木霉菌Trichoderma asperellum嗜铁素合成的关键基因,能够为进一步探索嗜铁素在生防和促生中的作用奠定基础。本研究在对sidA基因进行定位、结构分析和RT-PCR检测的基础上,利用double-joint PCR技术构建基因敲除载体,经聚乙二醇（PEG）介导原生质体转化、潮霉素初筛、PCR和southern blot验证获得突变株,并对其表型进行分析,获得2株性能稳定的敲除突变体?sidA1和?sidA2。与野生型相比,?sidA1和?sidA2的嗜铁素产量在5d时分别下降了38.67%和36.65%;孢子萌发率在12h时分别下降了45.33%和47.47%;产孢量在10d时分别下降了33.01%和41.02%,且突变株在受NaCl、KCl、SDS等胁迫时的抗性较野生型降低。表明sidA基因的缺失降低了嗜铁素产量,抑制了菌体的生长以及对胁迫因子的抗性,sidA基因是影响棘孢木霉嗜铁素产生的关键基因之一。     

First report of non-mycorrhizal plant mutants (Myc) obtained in pea (Pisum sativum L.) and fababean (Vicia faba L.)

Genetic resistance to vesicular-arbuscular (VA) mycorrhiza formation has been obtained in spontaneous or chemically induced mutants of two mycorrhiza-forming species (Pisum sativum L. and Vicia faba L.). The eight mutants, termed myc⁻, are characterized by aborted infections limited to one or two host cells. Expression of the myc⁻ character is associated with that of the nod⁻ character in both legumes, and is likewise under recessive genetic control. Preliminary analysis of the genetic behaviour of the myc⁻ mutants in diallel crosses has shown that at least three genes are involved in VA mycorrhiza infection.     

Abscisic acid-dependent PMT1 expression regulates salt tolerance by alleviating abscisic acid-mediated reactive oxygen species production in Arabidopsis

Phosphocholine(PCho) is an intermediate metabolite of nonplastid plant membranes that is essential for salt tolerance. However, how PCho metabolism modulates response to salt stress remains unknown. Here, we characterize the role of phosphoethanolamine N-methyltransferase 1(PMT1) in salt stress tolerance in Arabidopsis thaliana using a T-DNA insertional mutant, geneediting alleles, and complemented lines. The pmt1 mutants showed a severe inhibition of root elongation when exposed to salt stress,...     

Sex determination in the dioecious Melandrium. The X/Y chromosome system allows complementary cloning strategies

Melandrium album (Silene alba) is a dioecious species showing a clear-cut correlation between the phenotypic sex and the presence of heteromorphic sex chromosomes. The paper reviews basic aspects on taxonomy and flowering, concentrating on classical and more recent experiments on sex conversion: hormonal balance in planta or in vitro, interactions with the fungus Ustilago violacea, haploid production from anthers, induction of sex chromosomal aberrations via crosses between polyploids and interspecific crosses, isolation of sexual mutants through pollen irradiation, etc. The experimental data is used to discuss the current understanding of sex determination in this species. The phenotypic and genetic characteristics of Melandrium are underlined and enable alternative and complementary cloning strategies for genes involved in sex determination and differentiation.     

绿僵菌破坏素合成缺失株中分离鉴定pseurotin A

真菌次级代谢产物是医药活性成分的重要来源之一。就真菌基因组编码的次级代谢基因簇数量而言,由于普遍存在的基因沉默现象,常规培养中能够分离鉴定的化合物种类一般很有限。广谱杀虫的罗伯茨绿僵菌在液体培养基中的主要代谢产物为非核糖体环肽类的破坏素,本研究在对破坏素合成缺失突变株ΔdtxS1进行液体培养时获得了新的产物峰,对其中一个产物峰进行分离、纯化及结构鉴定,确定该化合物为螺环类的pseurotin A。结合在烟曲霉菌中解析的pseurotin A合成途径,推测获得了罗伯茨绿僵菌中的潜在合成基因簇,并推测了pseurotin A在绿僵菌中的合成途径。本研究首次在绿僵菌中鉴定获得pseurotin A,并揭示了在真菌中通过对主要次级代谢产物缺失的方法可以鉴定获得新型的化合物。     

Production and evolution pattern of “fruity smell” aggregation pheromones in genus Drosophila

Insects produce pheromones to serve a range of ecological functions throughout their lifetime. The chemical composition, production pattern, and interspecies specificity provide information for carrying out their function and biological significance. Several species of Drosophila produce a class of volatile esters considered as “fruity smells”; however, the production pattern and ecological functions of these “fruity smell” volatiles in genus Drosophila are poorly understood. Here, using the headspace solid-phase microextraction (SPME) method, we tested the production pattern of volatile pheromones in Drosophila immigrans and factors that possibly affected pheromone production, including mating, feeding conditions, age of adult flies, and geographical distribution. We also explored the evolution and production pattern of volatile pheromones in 14 species of genus Drosophila. Our result showed that male D. immigrans adult flies produce three male-specific volatile ester pheromones, which are also considered as “fruity smell” chemicals, in a relatively stable pattern. In addition, a series of “fruity smell” ester pheromones with similar structure and chemical properties were found to appear in the species of D. virilis and D. immigrans species group, but not in the species of D. melanogaster species group. The ester volatile pheromone production of male flies has a correspondence with the female's demand for host plants. Integrating the production and evolution pattern of these volatile chemicals, we inferred the interaction between insects and host plants reflected in the Drosophila “fruity smell” pheromones.     

Molecular analyses of in vivo hprt mutations in human T-lymphocytes. III. Longitudinal study of hprt gene structural alterations and T-cell clonal origins

The hprt clonal assay detects mutations occurring in vivo in the hypoxanthine-guanine phosphpribosyltransferase (hprt) gene of human T-lymphocytes. Analysis of 94 wild-type and 326 hprt mutant clones from 3 normal males was performed using Southern blotting with hprt and T-cell receptor (TCR) gene probes. Gross structural alterations of the hprt gene occurred in 14% of the in vivo derived mutants. Breakpoints were randomly distributed across the gene with one possible mutational “hot spot” observed. Most hprt mutants were independent as judge by TCR gene rearrangement patterns indicating that the measured hprt mutant frequency is a good measure of the actual hprt mutation frequency. However, sibling mutants (generally doublets and triplets except for one nonamer) were detected. Information on the timing in vivo of the hprt mutational events and the persistence in vivo of sibling mutants was also obtained.     

3个玉米黄叶突变体的光合特性研究

在农业生产中光合作用是作物积累生物量的主要方式,其主要依赖于多种光合色素和完整的叶绿体结构与功能。而玉米叶色突变体对于研究叶绿体发育、提高玉米光合作用能力和产量具有重要意义。以两个玉米自交系郑58(Z58)和B73为对照,对从甲基磺酸乙酯(ethyl methanesulphonate,EMS)处理后的不同玉米诱变群体中筛选到的2株黄叶突变体yl-1(yellow leaf-1,Z58背景)、yl-2(yellow leaf-2,B73背景)以及从玉米自交系Z58中发现的1株自然黄叶突变体yl-3(yellow leaf-3)等3个表型相似的玉米黄叶突变体的形态特征、光合色素含量、叶绿素合成前体物质含量进行了比较研究。结果表明,与对照相比,3个突变体在整个生长周期内均呈现不同程度的黄叶表型、不复绿、植株矮小、发育迟缓;叶片总叶绿素、叶绿素a和叶绿素b含量均显著降低(P<0.05),叶绿素a/叶绿素b比值显著升高(P<0.05);不同突变体的各类叶绿素合成前体物质含量有不同程度的降低。3个突变体的黄叶表型可能是由不同基因的突变导致相关四吡咯化合物合成异常引起的。研究结果为定位...     

Molecular cloning of genes involved in the production of the extracellular polysaccharide xanthan by Xanthomonas campestris pv. campestris

Recombinant plasmids pIJ3040 and pIJ3041 containing overlapping fragments of the genome of wild type Xanthomonas campestris pv. campestris restored the production of extracellularpolysaccharide to non-slimy mutants. Mutagenesis of the cloned DNA with the transposon Tn5 was used to localize the complementing region of the DNA. Marker-exchange of Tn5 insertions from cloned DNA into the X.c. campestris genome provided evidence for linked genes involved in EPS production. the EPS-deficient mutants retained pathogenicity in a seedlin bioassay.     

Rearing Tardigrades: Results and Problems

We report our first results of attempts to rear four species of eutardigrades inhabiting different substrates, feeding on different kinds of food and characterized by different sexual conditions and modes of reproduction. Attempts were carried out to follow individual terrestrial carnivorous (Macrobiotus richtersi, M. joannae) and limnic herbivorous (Diphascon cf. scoticum; Isohypsibius monoicus) species. Carnivorous leaf litter-dwelling species were reared in small dishes containing agar as substrate and bacteriophagous nematodes as food. Five generations were obtained with the triploid thelytokous strain of M. richtersi, whereas three generations were obtained with the hermaphrodite species M. joannae. Diphascon cf. scoticum and I. monoicus were reared in small dishes containing algae as food and substrate. Several generations were obtained for both species. Males were never found in D. cf. scoticum and I. monoicus was hermaphroditic. Specimens isolated from hatchings were maintained and reproduced in both species, demonstrating parthenogenesis in the first one and self-fertilization in the latter. Consideration of the problems and on the future applications of tardigrade rearing are discussed.     

Schistosoma bovis: Variability of cercarial production as related to the snail hosts: Bulinus truncatus, B. wrighti and Planorbarius metidjensis

Development of Schistosoma bovis from Spain in different species or genus of intermediate hosts (Bulinus truncatus, B. wrighti and Planorbarius metidjensis) modifies cercarial productivity and its dynamics. From B. truncatus to B. wrighti and to P. metidjensis, cercarial productivity decreases while the length of the production period is increased. Variations in the dynamics are less obvious between the two species of Bulinus than between Bulinus spp. and P. metidjensis. In the latter the emission pattern is characterized by a 45–48-day production rhythm. These differences are explained in terms of larval demographic strategies and biotic capacities of the hosts. The validity of employing cercarial production as an indicator of host-parasite compatibility is discussed.     

Circadian period lengths of lipid synthesis mutants (cel,chol-1) of Neurospora show defective temperature,but intact pH-compensation

The influence of extracellular pH on the circadian sporulation rhythm of Neurospora crassa has been investigated for the mutants chol-1 and cel. Both mutants have a defect in the lipid synthesis pathway and require either choline or palmitate, respectively, as supplements for normal growth. The chol-1 and cel mutants also show an impaired temperature-compensation when growing on minimal medium. We investigated the possible correlation between loss of temperature- and pH-compensation in cel and chol-1 similar to the correlation found earlier for the frq⁷ mutant. Our results show that the cel and the chol-1 mutants, although defective in temperature-compensation have an intact pH-compensation of their circadian rhythms. At present, the products of the frq-locus are the only components of the clock that affect the sporulation rhythm of Neurospora both through pH- and temperature-compensation.     

Effects of light quality on growth, biochemical composition and photo synthetic production in Cyclotella caspia Grunow and Tetraselmis gracilis (Kylin) Butcher

The effects of light quality on growth, biochemical composition and photosynthetic production in Cyclotella caspia Grunow and Tetraselmis gracilis (Kylin) Butcher were evaluated under controlled laboratory conditions. Cyclotella caspia had the highest values for maximum growth rate in blue-green light, whereas T. gracilis grew faster in red light. The highest cellular contents of chlorophylls [a, (c₁ + c₂)] and carotenoids of C. caspia were found respectively in red and blue-green light, while protein content did not change in response to spectral quality. Tetraselmis gracilis cells were more stimulated to synthesize pigments and protein when incubated in white light. For both species, pigment ratios showed intermediate values in white regime. The maximum values for photosynthetic rates were obtained in blue-green and red regimes in C. caspia and in red light in T. gracilis. The chromatic adaptive mechanisms shown for both species are compared and discussed in light of recent works presented for different phytoplankters, with emphasis on ecophysiological responses obtained in distinct spectral regimes.     

新型隐球菌临床菌株中CNAG_01032基因的鉴定和功能研究

新型隐球菌是一种具有荚膜的重要临床致病真菌。本课题组在前期工作中发现CNAG_01032基因可能引起不同来源菌株的表型差异,本研究在此基础上以新型隐球菌临床来源菌株IFM56800（C1）、IFM56769（C2）为背景构建CNAG_01032基因敲除突变体,并检测突变株和野生型菌株经典毒力因子变化情况;使用API 20C AUX测试系统测试突变株和野生型菌株对19种糖的利用情况;使用尾静脉注射法感染BALB/c雌性小鼠进行致病性检测。结果显示：成功构建以临床株C1、C2为背景的CNAG-01032基因敲除突变株;突变株在37℃生长、黑色素产生与野生型菌株无显著差异,但荚膜厚度分别比C1、C2减少16.4%、18.2%;两基因敲除菌株均不能分解利用纤维二糖;致病性与野生型菌株无显著差异。新型隐球菌CNAG_01032基因可能参与临床来源菌株IFM56800、IFM56769的荚膜合成和纤维二糖的代谢。     

匍枝根霉纤维二糖合成酶胞内糖基供体的初探及结构功能研究

纤维二糖可有效诱导丝状真菌产纤维素酶,前期研究表明匍枝根霉Rhizopus stolonifer TP-02具有纤维二糖合成酶(CBS),可以尿苷二磷酸葡萄糖(UDPG)为糖基供体合成纤维二糖,从而开启纤维素酶的自诱导合成途径。为研究R. stolonifer中纤维二糖的胞内合成途径,通过重叠PCR在GDP-葡糖焦磷酸化酶基因ggp中引入硫胺吡啶抗性基因ptrA,分别转化原菌TP-02和△ugp突变株,构建△ggp和△ugp/△ggp突变株。利用液质联用(LC-MS)检测突变株的胞内糖组分,发现ggp的缺失对胞内纤维二糖合成的影响较弱,但同时缺失ugp则将直接导致二糖合成受阻。RT-qPCR结果显示△ggp突变株中纤维素酶基因转录水平较原株TP-02下调20%左右,而△ugp/△ggp突变株中被测基因的转录水平则出现了高达80%左右的下调。同时对突变株纤维素酶表达水平进行研究,发现△ugp/△ggp突变株中几乎检测不到纤维素酶活力。结果显示,UDPG为R. stolonifer胞内合成纤维二糖的主要糖基供体,而GDPG可能是UDPG的替代物,在UDPG不足时维持胞内二糖合成。此外,利用生物信息学方法对CBS结构功能深入分析,经丙氨酸扫描确定其合成纤维二糖的关键作用残基为Asp210和Asp300,为后续进一步研究及理性改造提供方向和理论依据。     

运用红外相机调查云南巍山青华绿孔雀自然保护区的鸟兽多样性

2016年10月至2017年9月, 作者在云南巍山青华绿孔雀自然保护区的核心区和缓冲区的28个监测位点布设红外相机, 累计监测6,377台日, 共获得独立有效照片1,692张, 其中兽类563张, 鸟类1,129张。鉴定出71种鸟类和兽类, 其中兽类13种, 分属5目11科; 鸟类58种, 分属9目23科。国家一级重点保护动物有2种, 即黑颈长尾雉(Syrmaticus humiae)和林麝(Moschus berezovskii); 国家二级重点保护动物有7种, 分别是黄喉貂(Martes flavigula)、松雀鹰(Accipiter virgatus)、普通鵟(Buteo japonicus)、白腹锦鸡(Chrysolophus amherstiae)、白鹇(Lophuar nycthemera)、领角鸮(Otus lettia)和灰林鸮(Strix aluco)。在《中国脊椎动物红色名录》中, 1种被评估为极危, 3种被评估为易危。CITES附录I收录的有1种, 附录II收录的有7种。物种相对丰富度最高的是黑领噪鹛(Garrulax pectoralis, 5.68), 其次是赤腹松鼠(Callosciurus erythraeus, 2.81)、赤麂(Muntiacus muntjak, 1.68)。本次物种调查结果可反映本保护区大、中型兽类和地栖性鸟类本底, 为保护区管理和野生动物长期监测提供了数据。     

Ethylene-induced stomatal closure is mediated via MKK1/3–MPK3/6 cascade to EIN2 and EIN3

Mitogen-activated protein kinases (MPKs) play essential roles in guard cell signaling, but whether MPK cascades participate in guard cell ethylene signaling and interact with hydrogen peroxide (H₂O₂), nitric oxide (NO), and ethylene-signaling components remain unclear. Here, we report that ethylene activated MPK3 and MPK6 in the leaves of wild-type Arabidopsis thaliana as well as ethylene insensitive2 (ein2), ein3, nitrate reductase1 (nia1), and nia2 mutants, but this effect was impaired in ethylene response1 (etr1), nicotinamide adenine dinucleotide phosphate oxidase AtrbohF, mpk kinase1 (mkk1), and mkk3 mutants. By contrast, the constitutive triple response1 (ctr1) mutant had constitutively active MPK3 and MPK6. Yeast two-hybrid, bimolecular fluorescence complementation, and pull-down assays indicated that MPK3 and MPK6 physically interacted with MKK1, MKK3, and the C-terminal region of EIN2 (EIN2 CEND). mkk1, mkk3, mpk3, and mpk6 mutants had typical levels of ethylene-induced H₂O₂ generation but impaired ethylene-induced EIN2 CEND cleavage and nuclear translocation, EIN3 protein accumulation, NO production in guard cells, and stomatal closure. These results show that the MKK1/3–MPK3/6 cascade mediates ethylene-induced stomatal closure by functioning downstream of ETR1, CTR1, and H₂O₂ to interact with EIN2, thereby promoting EIN3 accumulation and EIN3-dependent NO production in guard cells.