Sexual Selection in the Loud Calls of Male Primates: Signal Content and Function

Researchers have used sexual selection theory and hypotheses based on intersexual mate choice and intrasexual mate competition to explain the role of spontaneous long-distance vocalizations emitted by adult male primates, relying on the tacit assumption that assessment or identity cues are encoded in the vocalizations. I review the published literature and aim to substantiate a relationship between sexual selection and long-distance vocal communication in primates. First, I review findings from nonprimate taxa to determine the relative importance of inter- and intrasexual selection and to provide a background for examining primates. Next, I describe several hypotheses for signal content and function in adult male loud calls. Then, I examine the available data across Primates for evidence to support or to refute these hypotheses and to determine if they meet proposed criteria for demonstrating sexual selection [Snowdon, C. T. (2004). Sexual Selection in Primates: New and Comparative Perspectives]. Signal content refers to patterns of acoustic features within vocalizations from which listeners might extract cues or information about the signaler. I interpret signal function, in turn, from behavioral responses of receivers and assume it has ultimate effects on the evolution and design of acoustic signals if direct fitness consequences exist. After the general review across primates, I propose orangutans as a candidate species for further evaluation of sexual selection in vocal communication. The available evidence corroborates a demonstrable relationship between sexual selection and adult male loud calls based on individual recognition, but it is necessary to obtain additional data to affirm a direct benefit to reproductive success.     

Function without purpose

Philosophers of evolutionary biology favor the so-called etiological concept of function according to which the function of a trait is its evolutionary purpose, defined as the effect for which that trait was favored by natural selection. We term this the selected effect (SE) analysis of function. An alternative account of function was introduced by Robert Cummins in a non-evolutionary and non-purposive context. Cummins's account has received attention but little support from philosophers of biology. This paper will show that a similar non-purposive concept of function, which we term causal role (CR) function, is crucial to certain research programs in evolutionary biology, and that philosophical criticisms of Cummins's concept are ineffective in this scientific context. Specifically, we demonstrate that CR functions are a vital and ineliminable part of research in comparative and functional anatomy, and that biological categories used by anatomists are not defined by the application of SE functional analysis. Causal role functions are non-historically defined, but may themselves be used in an historical analysis. Furthermore, we show that a philosophical insistence on the primary of SE functions places practicing biologists in an untenable position, as such functions can rarely be demonstrated (in contrast to CR functions). Biologists who study the form and function of organismal design recognize that it is virtually impossible to identify the past action of selection on any particular structure retrospectively, a requirement for recognizing SE functions.     

ESTIMATING THE FORM OF NATURAL SELECTION ON A QUANTITATIVE TRAIT

The fitness function f relates fitness of individuals to the quantitative trait under natural selection. The function is useful in predicting fitness differences among individuals and in revealing whether an optimum is present within the range of phenotypes in the population. It may also be thought of as describing the ecological environment in terms of the trait. Quadratic regression will approximate the fitness function from data (e.g., Lande and Arnold, 1983), but the method does not reliably indicate features of f such as the presence of modes (stabilizing selection) or dips (disruptive selection). I employ an alternative procedure requiring no a priori model for the function. The method is useful in two ways: it provides a nonparametric estimate of f, of interest by itself, and it can be used to suggest an appropriate parametric model. I also discuss measures of selection intensity based on the fitness function. Analysis of six data sets yields a variety of forms of f and provides new insights for some familiar cases. Low amounts of variation and a low density of data points near the tails of many phenotype distributions emerge as limitations to gaining information on fitness functions. An experimental approach in which the distribution of a quantitative trait is broadened through manipulation would minimize these problems.     

Learning and selection

Are learning processes selection processes? This paper takes a slightly modified version of the account of selection presented in Hull et al. (Behav Brain Sci 24:511–527, 2001) and asks whether it applies to learning processes. The answer is that although some learning processes are selectional, many are not. This has consequences for teleological theories of mental content. According to these theories, mental states have content in virtue of having proper functions, and they have proper functions in virtue of being the products of selection processes. For some mental states, it is plausible that the relevant selection process is natural selection, but there are many for which it is not plausible. One response to this (due to David Papineau) is to suggest that the learning processes by which we acquire non-innate mental states are selection processes and can therefore confer proper functions on mental states. This paper considers two ways in which this response could be elaborated, and argues that neither of them succeed: the teleosemanticist cannot rely on the claim that learning processes are selection processes in order to justify the attribution of proper functions to beliefs.     

Recent philosophy of biology: a review

Academia is subdivided into separate disciplines, most of which are quite discrete. In this review I trace the interactions between two of these disciplines: biology and philosophy of biology. I concentrate on those topics that have the most extensive biological content: function, species, systematics, selection, reduction and development. In the final section of this paper I touch briefly on those issues that biologists and philosophers have addressed that do not have much in the way of biological content.     

Are Radical and Conservative Substitution Rates Useful Statistics in Molecular Evolution?

A DNA mutation in a protein coding gene which causes an amino acid change can be classified as conservative or radical depending on the magnitude of the physicochemical difference between the two amino acids: radical mutations involve larger changes than conservative mutations. Here, I examine two key issues in determining whether radical and conservative substitution rates are useful statistics in molecular evolution. The first issue is whether such rates can be estimated reliably, and for this purpose I demonstrate considerable improvements achieved by simple modifications to an existing method. The second issue is whether conservative and radical substitution rates can tell us something about selection on protein function. I address this problem by estimating positive and negative selection on conservative and radical mutations using polymorphism and divergence data from Drosophila. These analyses show that negative selection, but not positive selection, differs significantly between conservative and radical mutations. The power of conservative and radical substitution rates in testing the nearly neutral theory of molecular evolution is illustrated by the analysis of two mammalian datasets.     

The population genetics of parthenogenetic strains of Drosophila mercatorum

Summary A one locus model has been developed to describe parthenogenetic populations restoring diploidy by central fusion, terminal fusion and gamete duplication. It was found that in the absence of selection all populations become homozygous. With selection, however, it is possible to maintain heterozygotes and homozygotes. The conditions required to yield such an equilibrium are a function of (1) the proportions of the various diploid restoring mechanisms (2) linkage to the kinetochore and (3) the intensity of selection. The model was then used to derive one-generation likelihood functions. These likelihoods were used in deriving estimation procedures for the frequency of gamete duplication which is important in forming isogenic lines and for the probability of a heterozygous female giving rise to a heterozygous zygoid. Next, n-generation likelihood functions with and without selection were calculated. These were used to estimate the selection coefficient and to derive two tests of the hypothesis of no selection versus the hypothesis of selection. The first test is a locally best test in the vicinity of no selection, and the second an odds for the hypotheses using a prior distribution on the selection coefficient.The experimental work was supported by AEC Contract At (11-1)-1552 awarded to Charles F. Sing, Department of Human Genetics, the University of Michigan.This work was carried out while Templeton was a recipient of an NSF predoctoral fellowship.     

Construction of an HpaI and HindII plasmid vector allowing direct selection of transformants harboring recombinant plasmids.

Summary The construction of the vector plasmid pKN80 is described, which can be used as HpaI or HindII cloning vehicle with direct selection on transformants harboring hybrid plasmids. pKN80 carries the EcoRI·C fragment of phage Mu DNA coding for a killing function which is efficiently expressed upon transformation of pKN80 into Mu-sensitive bacteria. Cloning of DNA fragments at the single HpaI site of pKN80 results in insertional inactivation of the killing function. Whereas religated pKN80 molecules yielded only a few transformants, the transformation efficiency had been increased by a factor of at least ten when HpaI fragments of DNA were added to the linearized vector prior to ligation. More than 90% of the transformants tested containted hybrid plasmids.     

Etiological Theories of Function: A Geographical Survey

Formulations of the essential commitment of the etiological theory of functions have varied significantly, with some individual authors' formulations even varying from one place to another. The logical geography of these various formulations is different from what is standardly assumed; for they are not stylistic variants of the same essential commitment, but stylistic variants of two non-equivalent versions of the etiological theory. I distinguish these strong and weak versions of the etiological theory (which differ with respect to the role of selection in their definitions of function), draw out their respective implications, and argue that the weak version is to be preferred to the strong.     

CORRELATIONAL SELECTION FOR COLOR PATTERN AND ANTIPREDATOR BEHAVIOR IN THE GARTER SNAKE THAMNOPHIS ORDINOIDES

Correlational selection favors combinations of traits and is a key element of many models of phenotypic and genetic evolution. Multiple regression techniques for measuring selection allow for the direct estimation of correlational selection gradients, yet few studies in natural populations have investigated this process. Color patterns and antipredator behaviors of snakes are thought to function interactively in predator escape and therefore may be subject to correlational selection. To investigate this hypothesis, I studied the survivorship of juvenile garter snakes, Thamnophis ordinoides, as a function of a suite of escape behaviors and color pattern. The only natural selection detected favored opposite combinations of stripedness of the color pattern and the tendency to perform during escape evasive behaviors called reversals. This selection presumably results from optical illusions created by moving patterns and their effects on visually foraging predators. Analysis of the bivariate selection surface shows that pure correlational selection can be thought of as a series of linear selection functions on one trait whose slopes depend on the value of the second trait. Alternatively, viewing the selection surface along its major axes reveals stabilizing and disruptive components of correlational selection. It is further shown that correlational selection alone can promote genetic variance and covariance within a generation. This phenomenon may be partially responsible for the extreme variation in color pattern and the genetic covariance between color pattern and behavior observed in natural populations of T. ordinoides.     

Human-specific evolution and adaptation led to major qualitative differences in the variable receptors of human and chimpanzee natural killer cells

Natural killer (NK) cells serve essential functions in immunity and reproduction. Diversifying these functions within individuals and populations are rapidly-evolving interactions between highly polymorphic major histocompatibility complex (MHC) class I ligands and variable NK cell receptors. Specific to simian primates is the family of Killer cell Immunoglobulin-like Receptors (KIR), which recognize MHC class I and associate with a range of human diseases. Because KIR have considerable species-specificity and are lacking from common animal models, we performed extensive comparison of the systems of KIR and MHC class I interaction in humans and chimpanzees. Although of similar complexity, they differ in genomic organization, gene content, and diversification mechanisms, mainly because of human-specific specialization in the KIR that recognizes the C1 and C2 epitopes of MHC-B and -C. Humans uniquely focused KIR recognition on MHC-C, while losing C1-bearing MHC-B. Reversing this trend, C1-bearing HLA-B46 was recently driven to unprecedented high frequency in Southeast Asia. Chimpanzees have a variety of ancient, avid, and predominantly inhibitory receptors, whereas human receptors are fewer, recently evolved, and combine avid inhibitory receptors with attenuated activating receptors. These differences accompany human-specific evolution of the A and B haplotypes that are under balancing selection and differentially function in defense and reproduction. Our study shows how the qualitative differences that distinguish the human and chimpanzee systems of KIR and MHC class I predominantly derive from adaptations on the human line in response to selective pressures placed on human NK cells by the competing needs of defense and reproduction.     

Variation,selection and evolution of function-valued traits

We describe an emerging framework for understanding variation, selection and evolution of phenotypic traits that are mathematical functions. We use one specific empirical example – thermal performance curves (TPCs) for growth rates of caterpillars – to demonstrate how models for function-valued traits are natural extensions of more familiar, multivariate models for correlated, quantitative traits. We emphasize three main points. First, because function-valued traits are continuous functions, there are important constraints on their patterns of variation that are not captured by multivariate models. Phenotypic and genetic variation in function-valued traits can be quantified in terms of variance-covariance functions and their associated eigenfunctions: we illustrate how these are estimated as well as their biological interpretations for TPCs. Second, selection on a function-valued trait is itself a function, defined in terms of selection gradient functions. For TPCs, the selection gradient describes how the relationship between an organism's performance and its fitness varies as a function of its temperature. We show how the form of the selection gradient function for TPCs relates to the frequency distribution of environmental states (caterpillar temperatures) during selection. Third, we can predict evolutionary responses of function-valued traits in terms of the genetic variance-covariance and the selection gradient functions. We illustrate how non-linear evolutionary responses of TPCs may occur even when the mean phenotype and the selection gradient are themselves linear functions of temperature. Finally, we discuss some of the methodological and empirical challenges for future studies of the evolution of function-valued traits.     

MEASUREMENTS OF SELECTION IN A HERMAPHRODITIC PLANT: VARIATION IN MALE AND FEMALE POLLINATION SUCCESS

I measured phenotypic selection of floral traits through both male and female functions of the hermaphroditic flowers of Ipomopsis aggregata (Pursh) V. Grant subsp. aggregata (Polemoniaceae). Fluorescent powdered dyes were used to track movement of pollen by hummingbirds and to measure pollen delivery to individual plants as well as pollen receipt. A phenotypic selection analysis revealed that selection due to male-male competition during pollination was capable of delaying flowering date and widening corolla tubes by 0.22 and 0.24 standard-deviation units, respectively, in a single generation. Several floral traits were highly correlated with each other. Multivariate selection analysis suggested that selection through male function directly favored late flowering as well as a sexual expression characterized by a short pistillate phase and long corollas. Selection intensities through male and female functions were of similar overall magnitude during the pollination stage of the life cycle, but different traits were favored, and selection sometimes acted in opposing directions. In 1985, selection through female function favored increased time spent in the pistillate phase and exserted stigmas (unlike selection through male function). As a result, individual plants varied greatly in functional gender. Plants that had exserted stigmas and narrow corollas and that spent a disproportionately long time in the pistillate phase achieved greater pollination success as females, while plants with the opposite traits achieved greater success as males. Moreover, female pollination success tended to increase, and male pollination success to decrease, with time spent in the pistillate phase, supporting a critical assumption of sex-allocation theory. Selection in the populations studied fluctuated from year to year and was highly sex-specific.     

Animal behaviour and algal camouflage jointly structure predation and selection

Trait variation can structure interactions between individuals, thus shaping selection. Although antipredator strategies are an important component of many aquatic systems, how multiple antipredator traits interact to influence consumption and selection remains contentious. Here, I use a common larval dragonfly (Epitheca canis) and its predator (Anax junius) to test for the joint effects of activity rate and algal camouflage on predation and survival selection. I found that active and poorly camouflaged Epitheca were more likely to be consumed, and thus, survival selection favoured inactive and well‐camouflaged individuals. Notably, camouflage dampened selection on activity rate, likely by reducing attack rates when Epitheca encountered a predator. Correlational selection is therefore conferred by the ecological interaction of traits, rather than by opposing selection acting on linked traits. I suggest that antipredator traits with different adaptive functions can jointly structure patterns of consumption and selection.     

Gene function, gene networks and the fate of duplicated genes

For both copies of a duplicated gene to become fixed in a population and subsequently maintained, selection must favour individuals with both genes over individuals with one. Here I review and assess some of the proposed ways that gene structure and function might affect the likelihood of both copies acquiring distinct functions and therefore positive selection. In particular I focus on the interacting pathways of genes that make up gene networks, and how these may affect genes duplicated both singly and en masse. Using the Wnt and hedgehog pathways as examples and data from developmental and genome analyses, I show that, while some of these theories may genuinely reflect what has occurred in animal evolution, there are still insufficient data to rigorously assess their relative importance. This, however, is likely to change in the near future.     

The incoherent feed‐forward loop can generate non‐monotonic input functions for genes

Gene regulation networks contain recurring circuit patterns called network motifs. One of the most common network motif is the incoherent type 1 feed‐forward loop (I1‐FFL), in which an activator controls both gene and repressor of that gene. This motif was shown to act as a pulse generator and response accelerator of gene expression. Here we consider an additional function of this motif: the I1‐FFL can generate a non‐monotonic dependence of gene expression on the input signal. Here, we study this experimentally in the galactose system of Escherichia coli, which is regulated by an I1‐FFL. The promoter activity of two of the gal operons, galETK and galP, peaks at intermediate levels of the signal cAMP. We find that mutants in which the I1‐FFL is disrupted lose this non‐monotonic behavior, and instead display monotonic input functions. Theoretical analysis suggests that non‐monotonic input functions can be achieved for a wide range of parameters by the I1‐FFL. The models also suggest regimes where a monotonic input‐function can occur, as observed in the mglBAC operon regulated by the same I1‐FFL. The present study thus experimentally demonstrates how upstream circuitry can affect gene input functions and how an I1‐FFL functions within its natural context in the cell.     

The strength of selection in the context of migration speed

I use a model of avian migration based on maximization of overall migration speed to compare the strength of selection acting on foraging performance and flight speed. Let the optimal foraging behaviour be u* and the optimal flight speed be v*. It is shown that at this optimum, the ratio of the strength of selection on foraging to the strength of selection on flight speed is theta = -(u*2Pgamma"/v*2gammaP"), where gamma is the rate of energy expenditure during flight and P is the rate at which energy is gained during foraging. The dimensionless ratio P/gamma is the ratio of time spent building up fuel to time spent flying which A. Hedenström and T. Alerstam showed was much greater than unity. Although theta depends on this ratio, it also depends on the curvatures of the functions, as represented by gamma" and P". I use this simple example to make some general points about the strength of selection.     

Polygenic control of quantitative antibody responsiveness: restrictions of the multispecific effect related to the selection antigen

Among the differences observed between the various high (H) and low (L) antibody responder lines of mice resulting from distinct bidirectional selective breedings, one of the most puzzling is the variation in the multispecific effect, i. e., in the modification of antibody responses to antigens unrelated to those used during the selection. The best examples are the H and L lines of selection IV, selected on the basis of responses to somatic antigen of Salmonella which do not differ in their antibody responses to sheep erythrocytes (SE). However, a wide range of variability is observed in the responses of (H_IV x L_IV)F₂ hybrids to this antigen, and it was therefore hypothesized that distinct groups of genes might regulate antibody responses to SE and the somatic antigen. Indeed, a new selection (IV-A) for anti-SE responsiveness started from these (H_IV x L_IV)F₂ successfully produced a high and a low anti-SE responder line. The results of selection IV-A and the variance analysis of (H_IV-A × L_IV-A)F₂ hybrids are reported. They are roughly similar to those in selection I, also carried out for anti-SE responsiveness. In vivo attempts to identify the major regulatory mechanism which contributes to the interline difference indicate that the efficiency of macrophage accessory function has been modified in selection IV-A, as was observed in selection I, whereas this function did not differ in Hév and Lév lines. Probably in relation to the involvement of macrophage function there is a notable increase of the multispecific effect in selection IV-A when compared with selection IV. The results of selection IV-A demonstrate that responsiveness to heterologous erythrocytes and to somatic antigen of Salmonella are under separate polygenic control operating through distinct regulatory mechanisms. The choice of the selection antigen and immunization procedure is of major importance for defining the gene interaction operating in each selective breeding experiment and the extent of its multispecific effect.Abbreviations used in this paper f. ag. S. flagellar antigen of Salmonella - H high responder line (roman numeral is the selection number) - h₂ heritability - HE human erythrocytes - HoGG horse gamma globulin - L low responder line (roman numeral is the selection number) - PE pigeon erythrocytes - R response to selection - RGG rabbit gamma globulin - S selection differential - s. ag. S. somatic antigen of Salmonella - SE sheep erythrocytes     

The shape of selection: using alternative fitness functions to test predictions for selection on flowering time

Selection gradient analysis examines the strength and direction of phenotypic selection as well as the curvature of fitness functions, allowing predictions on and insights into the process of evolution in natural populations. However, traditional linear and quadratic selection analyses are not capable of detecting other features of fitness functions, such as asymmetry or thresholds, which may be relevant for understanding key aspects of selection on many traits. In these cases, additional analyses are needed to test specific hypotheses about fitness functions. In this study we used several approaches to analyze selection on a major life-history trait—flowering time—in the annual plant Brassica rapa subjected to experimentally abbreviated and lengthened growing seasons. We used a model that incorporated a tradeoff between the time allocated to growth versus the time allocated to reproduction in order to predict fitness function shape. The model predicted that optimal flowering time shifts to earlier and later dates as the growing season contracts and expands. It also showed the flowering time fitness function to be asymmetrical: reproductive output increases modestly between the earliest and the optimal flowering date, but then falls sharply with later dates, truncating in a ‘tail of zeros’. Our experimental results strongly supported selection for early flowering in short season and selection for late flowering in long season conditions. We also found support for the predicted asymmetry of the flowering time fitness function, including a ‘tail of zeros’ at later flowering dates. The form of the fitness function revealed here has implications for interpreting estimates of selection on flowering time in natural populations and for refining predictions on evolutionary response to climate change. More generally, this study illustrates the value of diverse statistical approaches to understanding mechanisms of natural selection.