Exploring consensus in 21st century projections of climatically suitable areas for African vertebrates

Africa is predicted to be highly vulnerable to 21st century climatic changes. Assessing the impacts of these changes on Africa's biodiversity is, however, plagued by uncertainties, and markedly different results can be obtained from alternative bioclimatic envelope models or future climate projections. Using an ensemble forecasting framework, we examine projections of future shifts in climatic suitability, and their methodological uncertainties, for over 2500 species of mammals, birds, amphibians and snakes in sub‐Saharan Africa. To summarize a priori the variability in the ensemble of 17 general circulation models, we introduce a consensus methodology that combines co‐varying models. Thus, we quantify and map the relative contribution to uncertainty of seven bioclimatic envelope models, three multi‐model climate projections and three emissions scenarios, and explore the resulting variability in species turnover estimates. We show that bioclimatic envelope models contribute most to variability, particularly in projected novel climatic conditions over Sahelian and southern Saharan Africa. To summarize agreements among projections from the bioclimatic envelope models we compare five consensus methodologies, which generally increase or retain projection accuracy and provide consistent estimates of species turnover. Variability from emissions scenarios increases towards late‐century and affects southern regions of high species turnover centred in arid Namibia. Twofold differences in median species turnover across the study area emerge among alternative climate projections and emissions scenarios. Our ensemble of projections underscores the potential bias when using a single algorithm or climate projection for Africa, and provides a cautious first approximation of the potential exposure of sub‐Saharan African vertebrates to climatic changes. The future use and further development of bioclimatic envelope modelling will hinge on the interpretation of results in the light of methodological as well as biological uncertainties. Here, we provide a framework to address methodological uncertainties and contextualize results.     

Climate-driven range dynamics of the freshwater limpet, Ancylus fluviatilis (Pulmonata, Basommatophora)

Aim Our aim was to understand the processes that have shaped the present‐day distribution of the freshwater limpet Ancylus fluviatilis sensu stricto in order to predict the consequences of global climate change for the geographical range of this species. Location North‐western Europe. Methods We sampled populations of A. fluviatilis sensu stricto over the entire range of the species (north‐western Europe) and sequenced 16S ribosomal RNA (16S) and cytochrome oxidase subunit I (COI) mitochondrial fragments to perform phylogenetic and phylogeographical analyses. Climatic niche modelling allowed us to infer the climatic preferences of the species. A principal components analysis identified the most important climatic factors explaining the actual range of A. fluviatilis. We also identified which climatic factor was the most limiting at range margins, and predicted the species’ geographical range under a climate change scenario [Community Climate Model 3 (CCM3)]. Results By means of the phylogeographical analysis, we infer that A. fluviatilis sensu stricto occupied northern refuges during the Last Glacial Maximum. We show that the climatic preferences of Baltic populations are significantly different from those of Central European populations. The projection of the occupied area under the CCM3 climate model predicts a moderate poleward shift of the northern range limits, but a dramatic loss of areas currently occupied, for instance in northern Germany and in southern Great Britain. Main conclusions The post‐glacial range dynamics of A. fluviatilis are not governed by niche conservatism. Therefore, we must be cautious about bioclimatic model predictions: the expected impact of climate change could be tempered by the adaptive potential this species has already shown in its evolutionary history. Thus, modelling approaches should rather be seen as conservative forecasts of altered species ranges as long as the adaptive potential of the organisms in question cannot be predicted.     

Population connectivity and genetic diversity of American marten (Martes americana) in the United States northern Rocky Mountains in a climate change context

Climate change is likely to alter population connectivity, particularly for species associated with higher elevation environments. The goal of this study is to predict the potential effects of future climate change on population connectivity and genetic diversity of American marten populations across a 30.2 million hectare region of the in the US northern Rocky Mountains. We use a landscape resistance model validated from empirical landscape genetics modeling to predict the current and expected future extent and fragmentation of American marten dispersal habitat under five climate change scenarios, corresponding to climatic warming of between 0.7 and 3.3 °C, consistent with expected climate change by year 2080. We predict the regions of the current and future landscapes where gene flow is expected to be governed by isolation by distance and the regions where population fragmentation is expected to limit gene flow. Finally, we predict changes in the strength and location of predicted movement corridors, fracture zones and the location of dispersal barriers across the study area in each scenario. We found that under the current climate, gene flow is predicted to be limited primarily by distance (isolation), and landscape structure does not significantly limit gene flow, resulting in very high genetic diversity over most of the study area. Projected climatic warming substantially reduces the extent and increases the fragmentation of marten populations in the western and northwestern parts of the study area. In contrast, climate change is not predicted to fragment the extensive higher elevation mountain massifs in central Idaho, the northern U.S. continental divide, and Greater Yellowstone Ecosystem. In addition, we show locations in the study area that are important corridors in the current landscape that remain intact across the climate change scenarios.     

Inclusion of local environmental conditions alters high-latitude vegetation change predictions based on bioclimatic models

Current predictions of how species will respond to climate change are typically based on coarse-grained climate surfaces utilizing bioclimate envelope modelling. However, the suitability of environmental conditions for a given species might result from a variety of factors including some unrelated to climate. To address this issue, we investigated whether the inclusion of topographical and soil information in bioclimatic envelope models would significantly alter predictions of climate change—induced fine-scale tree and shrub species range size changes at the tree-limit in subarctic Europe. Using generalized additive models and data on current climate and species distributions and three different climate scenarios for the period 2040–2069, we developed predictions of the currently suitable area and potential range size changes of seven tree and shrub species in an area of 1,100 km² at a resolution of 1-ha. The inclusion of topography and soil information increased the predictive accuracy of climate-only models for all studied species. The predicted changes in species distribution volumes were contradictory, and the predicted occurrences varied greatly depending on the model used. Our results therefore support the arguments that vegetation responses to climate change can be influenced by local environmental conditions and that attention should be paid to the combined effects of these factors. We conclude that disregarding local topography and soil conditions in bioclimatic models may result in biased projections of range expansions and the associated colonization, extinction and turnover assessments.     

Species richness of migratory birds is influenced by global climate change

Aim  Global climate change is increasingly influencing ecosystems. Long-term effects on the species richness and composition of ecological communities have been predicted using modelling approaches but, so far, hardly demonstrated in the field. Here, we test whether changes in the composition of bird communities have been influenced by recent climate change.
Location  Europe.
Methods  We focus on the proportion of migratory and resident bird species because these groups are expected to respond differently to climatic change. We used the spatial relationship between climatic factors and bird communities in Europe to predict changes in 21 European bird communities under recent climate change.
Results  Observed changes corresponded significantly to predicted changes and could not be explained by the effects of spatial autocorrelation. Alternative factors such as changes in land use were tested in a first approximation as well but no effects were found.
Main conclusions  This study demonstrates that global climate change has already influenced the species richness and composition of European bird communities.     

Whole range and regional‐based ecological niche models predict differing exposure to 21st century climate change in the key cool temperate rainforest tree southern beech (Nothofagus cunninghamii)

The warmer and drier climates projected for the mid‐ to late‐21st century may have particularly adverse impacts on the cool temperate rainforests of southeastern Australia. Southern beech (Nothofagus cunninghamii; Nothofagaceae), a dominant tree species in these forests, may be vulnerable to minor changes in its climate envelope, especially at the edge of the species range, with Holocene fossil evidence showing local extinction of populations in response to small climate changes. We modelled the stability of this species climate envelope using the maximum entropy algorithm implemented in Maxent and two thresholds of presence/absence by projecting the modern climate envelope onto four Global Circulation Models forecasted for two time periods (2050s and 2070s). The climate envelope, as estimated from the species present climatic range, is predicted to shrink by up to 49% by the 2050s and up to 64% by the 2070s. The greatest predicted reduction is in Victoria with 91–100% of its current range being climatically unsuitable by the 2070s. Climatically similar areas to the species present range are predicted to remain in mountainous areas of western Tasmania, the Northeast Highlands of Tasmania, and the Baw Baw Plateau in the Central Highlands of Victoria. However, region‐specific modelling approaches made very different predictions from the whole‐range based models, especially in the severity of the predicted decline for Victorian populations of N. cunninghamii which occur in much warmer climates than the rest of the species geographical range. This shows that, for widespread species that span a range of climate zones, the exposure of current populations to climate change may be better modelled using a regional based approach. How the species responds to climate change will depend on the species ability to respond to drier and warmer climates and the concomitant increase in fire intensity.     

Modelling distribution in European stream macroinvertebrates under future climates

Climate change is predicted to have profound effects on freshwater organisms due to rising temperatures and altered precipitation regimes. Using an ensemble of bioclimatic envelope models (BEMs), we modelled the climatic suitability of 191 stream macroinvertebrate species from 12 orders across Europe under two climate change scenarios for 2080 on a spatial resolution of 5 arc minutes. Analyses included assessments of relative changes in species’ climatically suitable areas as well as their potential shifts in latitude and longitude with respect to species’ thermal preferences. Climate‐change effects were also analysed regarding species’ ecological and biological groupings, namely (1) endemicity and (2) rarity within European ecoregions, (3) life cycle, (4) stream zonation preference and (5) current preference. The BEMs projected that suitable climate conditions would persist in Europe in the year 2080 for nearly 99% of the modelled species regardless of the climate scenario. Nevertheless, a decrease in the amount of climatically suitable areas was projected for 57–59% of the species. Depending on the scenario, losses could be of 38–44% on average. The suitable areas for species were projected to shift, on average, 4.7–6.6° north and 3.9–5.4° east. Cold‐adapted species were projected to lose climatically suitable areas, while gains were expected for warm‐adapted species. When projections were analysed for different species groupings, only endemics stood out as a particular group. That is, endemics were projected to lose significantly larger amounts of suitable climatic areas than nonendemic species. Despite the uncertainties involved in modelling exercises such as this, the extent of projected distributional changes reveals further the vulnerability of freshwater organisms to climate change and implies a need to understand the consequences for ecological function and biodiversity conservation.     

The projected effects of climatic and vegetation changes on the distribution and diversity of Southeast Asian bats

Southeast‐Asia (SEA) constitutes a global biodiversity hotspot, but is exposed to extensive deforestation and faces numerous threats to its biodiversity. Climate change represents a major challenge to the survival and viability of species, and the potential consequences must be assessed to allow for mitigation. We project the effects of several climate change scenarios on bat diversity, and predict changes in range size for 171 bat species throughout SEA. We predict decreases in species richness in all areas with high species richness (>80 species) at 2050–2080, using bioclimatic IPCC scenarios A2 (a severe scenario, continuously increasing human population size, regional changes in economic growth) and B1 (the ‘greenest’ scenario, global population peaking mid‐century). We also predicted changes in species richness in scenarios that project vegetation changes in addition to climate change up to 2050. At 2050 and 2080, A2 and B1 scenarios incorporating changes in climatic factors predicted that 3–9% species would lose all currently suitable niche space. When considering total extents of species distribution in SEA (including possible range expansions), 2–6% of species may have no suitable niche space in 2050–2080. When potential vegetation and climate changes were combined only 1% of species showed no changes in their predicted ranges by 2050. Although some species are projected to expand ranges, this may be ecologically impossible due to potential barriers to dispersal, especially for species with poor dispersal ability. Only 1–13% of species showed no projected reductions in their current range under bioclimatic scenarios. An effective way to facilitate range shift for dispersal‐limited species is to improve landscape connectivity. If current trends in environmental change continue and species cannot expand their ranges into new areas, then the majority of bat species in SEA may show decreases in range size and increased extinction risk within the next century.     

Potential impacts of climate change on the distributions and diversity patterns of European mammals

The Intergovernmental Panel on Climate Change (IPCC) predicts an increase in global temperatures of between 1.4°C and 5.8°C during the 21st century, as a result of elevated CO₂ levels. Using bioclimatic envelope models, we evaluate the potential impact of climate change on the distributions and species richness of 120 native terrestrial non-volant European mammals under two of IPCC’s future climatic scenarios. Assuming unlimited and no migration, respectively, our model predicts that 1% or 5–9% of European mammals risk extinction, while 32–46% or 70–78% may be severely threatened (lose > 30% of their current distribution) under the two scenarios. Under the no migration assumption endemic species were predicted to be strongly negatively affected by future climatic changes, while widely distributed species would be more mildly affected. Finally, potential mammalian species richness is predicted to become dramatically reduced in the Mediterranean region but increase towards the northeast and for higher elevations. Bioclimatic envelope models do not account for non-climatic factors such as land-use, biotic interactions, human interference, dispersal or history, and our results should therefore be seen as first approximations of the potential magnitude of future climatic changes.     

Impact of climate change on the distribution of populations of an endemic Mexican columnar cactus in the Tehuacán-Cuicatlán Valley,Mexico

In this paper, we present a bioclimatic approach to (1) differentiate populations of the endemic Mexican columnar cactus Neobuxbaumia tetetzo within the Tehuacán-Cuicatlán Valley and (2) evaluate, under two possible future scenarios (years 2050 and 2080), the effects of climate change on the total species distribution in this area, as well as on groups of populations defined by their bioclimatic models. Four population groups were identified, and principal component analysis showed that the variables that explained more than 40% of the climatic variation were precipitation of the wettest quarter and temperature seasonality. Bioclimatic models under the different scenarios indicated that when the overall species distribution was analyzed, this area will probably have contracted by 19.5% by the year 2050 and 47.05% by the year 2080, whereas the separate analysis of population groups projected area contractions of 18.4% by the year 2050 and 51.95% by the year 2080. These results demonstrate the importance of exploring new approaches for evaluating and predicting current and future distribution of plant species.     

Disregarding topographical heterogeneity biases species turnover assessments based on bioclimatic models

We investigated whether the inclusion of topographical heterogeneity in bioclimatic envelope models would significantly alter predictions of climate change – induced broad-scale butterfly species range size changes in Europe. Using generalized additive models, and data on current climate and species distributions and two different climate scenarios (HadCM3A2 and HadCM3B2) for the period 2051–2080, we developed predictions of the currently suitable area and potential range size changes of 100 European butterfly species. The inclusion of elevation range increased the predictive accuracy of climate-only models for 86 of the 100 species. The differences in projected future distributions were most notable in mountainous areas, where the climate–topography models projected only ca. half of the species losses than the climate-only models. By contrast, climate–topography models estimated double the losses of species than climate-only models in the flatlands regions. Our findings suggest that disregarding topographical heterogeneity may cause a significant source of error in broad-scale bioclimatic modelling. Mountainous regions are likely to be even more important for future conservation of species than had until now been predicted, based on bioclimatic envelope models that did not take an explicit account of elevational range of grid squares.     

Potential changes in the distributions of latitudinally restricted Australian butterfly species in response to climate change

This study assessed potential changes in the distributions of Australian butterfly species in response to global warming. The bioclimatic program, BIOCLIM, was used to determine the current climatic ranges of 77 butterfly species restricted to Australia. We found that the majority of these species had fairly wide climatic ranges in comparison to other taxa, with only 8% of butterfly species having a mean annual temperature range spanning less than 3 °C. The potential changes in the distributions of 24 butterfly species under four climate change scenarios for 2050 were also modelled using BIOCLIM. Results suggested that even species with currently wide climatic ranges may still be vulnerable to climate change; under a very conservative climate change scenario (with a temperature increase of 0.8–1.4 °C by 2050) 88% of species distributions decreased, and 54% of species distributions decreased by at least 20%. Under an extreme scenario (temperature increase of 2.1–3.9 °C by 2050) 92% of species distributions decreased, and 83% of species distributions decreased by at least 50%. Furthermore, the proportion of the current range that was contained within the predicted range decreased from an average of 63% under a very conservative scenario to less than 22% under the most extreme scenario. By assessing the climatic ranges that species are currently exposed to, the extent of potential changes in distributions in response to climate change and details of their life histories, we identified species whose characteristics may make them particularly vulnerable to climate change in the future.     

Mutualism influences species distribution predictions for a bromeliad‐breeding anuran under climate change

Ecological niche models, or species distribution models, have been widely used to identify potentially suitable areas for species in future climate change scenarios. However, there are inherent errors to these models due to their inability to evaluate species occurrence influenced by non‐climatic factors. With the intuit to improve the modelling predictions for a bromeliad‐breeding treefrog (Phyllodytes melanomystax, Hylidae), we investigate how the climatic suitability of bromeliads influences the distribution model for the treefrog in the context of baseline and 2050 climate change scenarios. We used point occurrence data on the frog and the bromeliad (Vriesea procera, Bromeliaceae) to generate their predicted distributions based on baseline and 2050 climates. Using a consensus of five algorithms, we compared the accuracy of the models and the geographic predictions for the frog generated from two modelling procedures: (i) a climate‐only model for P. melanomystax and V. procera; and (ii) a climate‐biotic model for P. melanomystax, in which the climatic suitability of the bromeliad was jointly considered with the climatic variables. Both modelling approaches generated strong and similar predictive power for P. melanomystax, yet climate‐biotic modelling generated more concise predictions, particularly for the year 2050. Specifically, because the predicted area of the bromeliad overlaps with the predictions for the treefrog in the baseline climate, both modelling approaches produce reasonable similar predicted areas for the anuran. Alternatively, due to the predicted loss of northern climatically suitable areas for the bromeliad by 2050, only the climate‐biotic models provide evidence that northern populations of P. melanomystax will likely be negatively affected by 2050.     

Does the protected area network preserve bird species of conservation concern in a rapidly changing climate?

Species ranges are expected to move polewards following the changing climate, which poses novel challenges to the protected area network, particularly at northern latitudes. Here we study how well protected areas are likely to sustain populations of birds of conservation concern under a changing climate in northern Europe, in Finland. We fitted bioclimatic envelope models generated for 100 bird species to climate scenario data for the years 2051–2080 and three alternative emission scenarios in a 10-km grid system to predict changes in the species probability of occurrence. We related the projected changes in the climatic suitability to the amount of protected preferred habitat for the study species in the 10-km grid cells, and based on the cover of four main CORINE Land Cover classes in each conservation area in Finland. The probability of occurrence of all species (except marshland birds) decreased according to all scenarios, the decline being greatest in southern and smallest in northern boreal zones. This decline was slightly greater in unprotected than in protected areas for species of forests, mires and mountain habitats. The climatically suitable areas for the species were predicted to shift northwards, but the potential gain of southern species of conservation concern appears not to compensate for the loss of northern species. Thus, a representative protected area network is needed in all boreal zones. Overall, our results show that species-specific habitat preferences and habitat availability should be taken into account when assessing the efficiency of a protected area network in a changing climate.     

A phyloclimatic study of Cyclamen

Background

The impact of global climate change on plant distribution, speciation and extinction is of current concern. Examining species climatic preferences via bioclimatic niche modelling is a key tool to study this impact. There is an established link between bioclimatic niche models and phylogenetic diversification. A next step is to examine future distribution predictions from a phylogenetic perspective. We present such a study using Cyclamen (Myrsinaceae), a group which demonstrates morphological and phenological adaptations to its seasonal Mediterranean-type climate. How will the predicted climate change affect future distribution of this popular genus of garden plants?

Results

We demonstrate phylogenetic structure for some climatic characteristics, and show that most Cyclamen have distinct climatic niches, with the exception of several wide-ranging, geographically expansive, species. We reconstruct climate preferences for hypothetical ancestral Cyclamen. The ancestral Cyclamen lineage has a preference for the seasonal Mediterranean climate characteristic of dry summers and wet winters. Future bioclimatic niches, based on BIOCLIM and Maxent models, are examined with reference to a future climate scenario for the 2050s. Over the next 50 years we predict a northward shift in the area of climatic suitability, with many areas of current distribution becoming climatically unsuitable. The area of climatic suitability for every Cyclamen species is predicted to decrease. For many species, there may be no areas with a suitable climate regardless of dispersal ability, these species are considered to be at high risk of extinction. This risk is examined from a phylogenetic perspective.

Conclusion

Examining bioclimatic niches from a phylogenetic perspective permits novel interpretations of these models. In particular, reconstruction of ancestral niches can provide testable hypothesis about the historical development of lineages. In the future we can expect a northwards shift in climatic suitability for the genus Cyclamen. If this proves to be the case then dispersal is the best chance of survival, which seems highly unlikely for ant-dispersed Cyclamen. Human-assisted establishment of Cyclamen species well outside their native ranges offers hope and could provide the only means of dispersal to potentially suitable future environments. Even without human intervention the phylogenetic perspective demonstrates that major lineages could survive climate change even if many species are lost.     

Expertly Validated Models and Phylogenetically-Controlled Analysis Suggests Responses to Climate Change Are Related to Species Traits in the Order Lagomorpha

Climate change during the past five decades has impacted significantly on natural ecosystems, and the rate of current climate change is of great concern among conservation biologists. Species Distribution Models (SDMs) have been used widely to project changes in species’ bioclimatic envelopes under future climate scenarios. Here, we aimed to advance this technique by assessing future changes in the bioclimatic envelopes of an entire mammalian order, the Lagomorpha, using a novel framework for model validation based jointly on subjective expert evaluation and objective model evaluation statistics. SDMs were built using climatic, topographical, and habitat variables for all 87 lagomorph species under past and current climate scenarios. Expert evaluation and Kappa values were used to validate past and current models and only those deemed ‘modellable’ within our framework were projected under future climate scenarios (58 species). Phylogenetically-controlled regressions were used to test whether species traits correlated with predicted responses to climate change. Climate change is likely to impact more than two-thirds of lagomorph species, with leporids (rabbits, hares, and jackrabbits) likely to undertake poleward shifts with little overall change in range extent, whilst pikas are likely to show extreme shifts to higher altitudes associated with marked range declines, including the likely extinction of Kozlov’s Pika (Ochotona koslowi). Smaller-bodied species were more likely to exhibit range contractions and elevational increases, but showing little poleward movement, and fecund species were more likely to shift latitudinally and elevationally. Our results suggest that species traits may be important indicators of future climate change and we believe multi-species approaches, as demonstrated here, are likely to lead to more effective mitigation measures and conservation management. We strongly advocate studies minimising data gaps in our knowledge of the Order, specifically collecting more specimens for biodiversity archives and targeting data deficient geographic regions.     

The future of invasive African grasses in South America under climate change

Climate change will promote substantial effects on the distribution of invasive species. Here, I used an ensemble of bioclimatic envelope models (Gower Distance, Chebyshev Distance, and Mahalanobis Distance) to forecast climatically suitable areas of South America for 13 invasive African grass species under future climate conditions (year 2050). Under current climatic conditions, the areas with the potential for the highest invasive species richness are located mostly in the tropical climates of South America, except for the Amazon region. In the year 2050, the overall pattern of invasive species richness will not change considerably, and increases in northeastern Amazon and portions of the temperate regions of South America are predicted.     

Climate change is predicted to cause population collapse in a cooperative breeder

It has been suggested that animals may have evolved cooperative breeding strategies in response to extreme climatic conditions. Climate change, however, may push species beyond their ability to cope with extreme climates, and reduce the group sizes in cooperatively breeding species to a point where populations are no longer viable. Predicting the impact of future climates on these species is challenging as modelling the impact of climate change on their population dynamics requires information on both group- and individual-level responses to climatic conditions. Using a single-sex individual-based model incorporating demographic responses to ambient temperature in an endangered species, the African wild dog Lycaon pictus, we show that there is a threshold temperature above which populations of the species are predicted to collapse. For simulated populations with carrying capacities equivalent to the median size of real-world populations (nine packs), extinction risk increases once temperatures exceed those predicted in the best-case climate warming scenario (Representative Concentration Pathway [RCP] 2.6). The threshold is higher (between RCP 4.5 and RCP 6.0) for larger simulated populations (30 packs), but 84% of real-world populations number <30 packs. Simulated populations collapsed because, at high ambient temperatures, juvenile survival was so low that packs were no longer recruiting enough individuals to persist, leading them to die out. This work highlights the importance of social dynamics in determining impacts of climatic variables on social species, and the critical role that recruitment can play in driving population-level impacts of climate change. Population models parameterised on long-term data are essential for predicting future population viability under climate change.