放线菌代谢产物的研究进展：基于Web of Science (WOS)和中国知网(CNKI)

【背景】放线菌是一类极其重要的微生物,代谢产物丰富,在医药、生物技术、农业和酶工业等领域均有广泛应用。【目的】客观分析放线菌代谢产物的研究进展,为该领域相关工作人员提供有效情报,推动该领域高质量发展。【方法】对Web of Science (WOS)和中国知网(China National Knowledge Infrastructure, CNKI)数据库中放线菌代谢产物的发文数量、发文国家、发文机构、发文期刊、发文出版社、发文作者、被引文章和研究方向进行统计分析,利用H指数对相关影响力进行综合评价,其研究热点、发展趋势通过Cite Space和VOSviewer软件进行可视化分析。【结果】WOS结果显示,放线菌代谢产物研究领域全球影响力最大的国家是美国,影响力最大的机构是美国加利福利亚大学,影响力最大的期刊是美国Applied and Environmental Microbiology,影响力最大的出版社是Elsevier,影响力最大的作者是来自英国约翰英纳斯研究中心微生物学部的Mervyn J Bibb教授。全球放线菌代谢产物领域的主要研究方向是微生物学,研究热点是生物合成。研...     

Immobilization of glucose oxidase on chitosan-based porous composite membranes and their potential use in biosensors

The glucose oxidase (GO_x) enzyme was immobilized on chitosan-based porous composite membranes using a covalent bond between GO_x and the chitosan membrane. The chitosan-based porous membranes were prepared by the combination of the evaporation- and non-solvent-induced phase separation methods. To increase the membrane conductivity, carbon nanotubes (CNTs) were added to the chitosan solution. The resulting membranes were characterized in terms of water permeability, surface morphology and surface chemistry. Enzyme immobilization was performed on the chitosan membranes with and without activation using glutaraldehyde (GA). Three different configurations of working electrodes were evaluated to investigate the potential use of the modified membranes in biosensors. The results show that enzyme immobilization capacity was greater for membranes that had been activated than for membranes that had not been activated. In addition, activation increased the stability of the enzyme immobilization. The immobilization of GO_x on chitosan-based membranes was influenced by both pH and the concentration of the enzyme solution. The presence of CNTs significantly increased the electrical conductivity of the chitosan membranes. The evaluation of three different configurations of working electrodes suggested that the third configuration, which was composed of an electrode-mediator-(chitosan and carbon nanotube) structure and enzyme, is the best candidate for biosensor applications.     

微生物与肺癌研究的知识图谱构建及可视化分析

【背景】微生物与肺癌的发生发展密切相关，该领域研究已成为国内外持续关注的焦点。【目的】对微生物与肺癌相关的文献进行文献计量分析，分析该领域的研究现状和发展趋势，为后续研究提供参考。【方法】收集Web of Science Core Collection （WOSCC）、中国知网（China National Knowledge Infrastructure，CNKI）、万方（Wanfang）与维普（VIP database for Chinese technical periodicals，VIP）等数据库的文献数据，并通过CiteSpace和VOSviewer对其年发文量、国家/地区、关键词进行可视化分析。【结果】共收录中文文献143篇，英文文献278篇。中国是发文量最多的国家。关键词分析显示，肺癌、肠道微生物、免疫治疗等关键词是该领域的研究热点。【结论】在过去20年中人们已关注到微生物在肺癌致病机制、诊断和治疗中的作用。通过对比这些数据库发现，国内外关注的热点话题基本一致。但该领域仍处于早期发展阶段，研究相对不成熟，缺乏广泛密切的国际合作，未来应进一步加强对该领域前沿热点的深入研究。本文结果有助于研究人员进一步了解该领域前沿热点及发展趋势，为后续研究的深入探索提供参考。     

A bibliometric analysis of research trends in bat echolocation studies between 1970 and 2021

Bats are among the few mammals that have acquired a sophisticated echolocation ability, attracting considerable attention for their uniqueness. Over the past 50 years, numerous research projects have been designed to study bat echolocation. The overall trend is complex and the dynamics of those publications are difficult to capture. In this study, we conducted quantitative bibliometric analyses of academic articles to identify global research trends in bat echolocation. Data were retrieved from the Web of Science, with 2914 articles sampled in our dataset from 1970 to 2021. We analyzed the global research trends in terms of annual publications, active journals, authors, institutions, and countries. We identified growth trends in the past 50 years, to which the United States was found to be the largest contributor. The University of Bristol, the University of Munich, and the Smithsonian Institute were the representative institutions of publication records. Meanwhile, Acta Chiropterologica, Journal of Experimental Biology, and Journal of the Acoustical Society of America were the top three active platforms for bat echolocation research. Co-occurrence analysis of keywords identified five clusters that correspond to five major research topics in bat echolocation: “habitat use and conservation,” “evolution,” “physiology and nervous system,” “communication and social call,” and “hunting and predation.” The overlay visualization indicated that studies on the evolution of bat echolocation had become the latest research trend, which we summarized and reviewed. Lastly, based on the results obtained, we discussed the importance of future directions for integrative multi-omics studies to uncover the mechanisms and evolution of bat echolocation.     

Activity and stability comparison of immobilized NADH oxidase on multi-walled carbon nanotubes,carbon nanospheres,and single-walled carbon nanotubes

Nanomaterials have been studied widely as the supporting materials for enzyme immobilization because in theory, they can provide low diffusion resistance and high surface/volume ratio. Common immobilization methods, such as physical adsorption, covalent binding, crosslinking, and encapsulation, often cause problems in enzyme leaching, 3D structure change and strong mass transfer resistance. We have previously demonstrated a site-specific enzyme immobilization method, which is based on the specific interaction between a His-tagged enzyme and functionalized single-walled carbon nanotubes (SWCNTs), that can overcome the foresaid constraints. In this work, we broadened the use of this immobilization approach by applying it on other nanomaterials, including multi-walled carbon nanotubes and carbon nanospheres. Both supporting materials were modified with N_α,N_α-bis(carboxymethyl)-l-lysine hydrate prior to enzyme immobilization. The resulting nanomaterial–enzyme conjugates could maintain 78–87% of the native enzyme activity and showed significantly better stability than the free enzyme. When compared with the SWCNT–enzyme conjugate, we found that the size variance among these supporting nanomaterials may affect factors such as surface curvature, surface coverage and particle mobility, which in turn results in differences in the activity and stability among these immobilized biocatalysts.     

Canadian contributions to research on neglected tropical diseases

BackgroundThe World Health Organization’s (WHO) Neglected Tropical Disease (NTD) Road Map for 2021–2030 was recently endorsed by all member states at the World Health Assembly in November 2020. Although only 3 of the 20 NTDs are endemic in Canada (i.e., echinococcosis, rabies, and scabies), the Canadian research community has contributed to advancing the knowledge base of all 20 NTDs. Previous research comprehensively detailed Canadian research on 11 NTDs between 1950 and 2010 using a network analysis approach. The specific objective of the present analysis was to update the publication record over the last decade (2010–2019) to include all 20 NTDs.Materials and methodsA bibliometric analysis was conducted in Scopus and Web of Science databases (for English or French articles published between January 1, 2010 and December 31, 2019) using appropriate search terms for each of the 20 NTDs and where at least 1 of the authors had a Canadian institution address. A 21st search was added to include publications including multiple NTDs or a discussion of NTDs in general. Following assessment of inclusion and exclusion criteria, 2 reviewers independently screened all abstracts, with discordant observations rereviewed to arrive at an agreement. Duplicates were removed.ResultsA total of 1,790 publications were retrieved (1,738 with a disease–specific NTD focus and 52 with a general NTD focus, resulting in 1,659 unique publications), giving an average of over 160 articles per year. Over 80% were classified as full–length research articles. The top 3 journals in terms of frequency were PLOS Neglected Tropical Diseases, PLOS ONE, and the American Journal of Tropical Medicine and Hygiene. Authors’ institutions were from all Canadian provinces. While all 20 NTDs were addressed in these publications, the 5 most commonly studied were leishmaniasis, dengue fever and chikungunya, Chagas disease, soil–transmitted helminthiases, and rabies.ConclusionsCanadian researchers across the country have contributed to the evidence base of all 20 NTDs, publishing an average of over 160 publications per year between 2010 and 2019. As WHO NTD Road Map 2021–2030 rolls out globally, the Canadian research community, in collaboration with its partners and in solidarity with people living in vulnerable circumstances in endemic regions worldwide, is well positioned to meet future research challenges so that the goal of eliminating the disease burden attributable to NTDs can be achieved.     

中国动物行为学研究现状的文献计量学分析

采用文献计量学的方法,在《中国学术期刊网络出版总库》和《Science Citation Index》数据库中,以“动物行为”、“animal behavior”、“ethology”作为检索词,检索了中国学者在国内外期刊上发表的中英文文献,并对中国动物行为学领域发文的年代、期刊、研究单位、作者、被引频次、国际合作、基金项目、研究对象和领域等内容进行了定量分析。结果表明：中国动物行为学研究起步较晚,近三十多年来相关动物行为学文献在波动中增长,并在近几年有从中文向英文转移的趋势;平均每篇文献被引2.81次;作者和研究单位虽然分散,但已经形成了专门从事动物行为研究的核心作者群、研究机构群;国内外均存在动物行为学文献的主要期刊分布区,但国内迫切需要一种动物行为学的专业期刊;动物行为研究的基金来源广泛,其中国家自然科学基金占重要地位;有国外作者参与的英文文献比例远大于中文文献,主要合作国家是美国;中国动物行为研究对象主要为哺乳动物,鸟类是中文文献第二位研究对象而昆虫是英文文献的第二位研究对象;繁殖行为是中国动物行为主要研究领域,中文文献在行为观察记录和行为谱、活动节律和时间分配方面的比例远远大于英文文献。总体上看,中国动物行为学文献发展符合科学文献逻辑增长曲线;整体研究水平偏低,国际影响力有待提高;中国动物行为学已步入新的发展阶段。     

Enhancement of fibrinolytic enzyme production from Bacillus subtilis via immobilization process onto radiation synthesized starch/dimethylaminoethyl methacrylate hydrogel

Hydrogel matrices based on starch and dimethylaminoethyl methacrylate (Starch/DMAEMA) were synthesized including γ-irradiation as a clean initiator. The prepared hydrogels were characterized in terms of their gel fraction yield, degree of equilibrium swelling. The prepared hydrogels were examined as carriers for immobilization of Bacillus subtilis that has the ability to secrete an extracellular fibrinolytic enzyme that degrades fibrin. Scanning electron microscope (SEM) analysis showed proliferation of the bacterial cells entrapped inside the polymeric matrix. The immobilization process increases the production time of fibrinolytic enzyme up to 120 h instead of 96 h for the free cells. The optimum temperature of activity broadened and a significant shift in the pH optima was observed upon immobilization. The reusability of immobilized cells under repeated batch fermentation conditions was also investigated. At the optimum production conditions, immobilization of B. subtilis cells onto Starch/DMAEMA resulted in a four fold increase in enzyme activity.     

基于近10年红球菌发展的文献计量分析

【背景】近些年,越来越多的研究集中在红球菌上,很少有研究人员对现有文献进行全面回顾。【目的】为了探究国内外红球菌领域的研究热点、前沿和未来发展趋势,以便为后续研究人员提供全面直观的参考。【方法】对近10年发表在Web of Science的红球菌领域论文进行统计分析和文献计量分析。通过VOSviewer文献可视化软件绘制作者标签视图和关键词共现网络图。【结果】全球有关红球菌领域的发文量总体呈逐年上升趋势,发表期刊多为微生物学领域的专科期刊,中国和美国的文章发表数和引用数远超其他国家,红球菌的研究内容也主要集中在生物催化、生物降解和非核糖体肽合成酶等方面。【结论】红球菌在世界范围内越来越受到重视,并逐渐成为研究热点,国家和研究机构应继续加强合作,推动红球菌领域的继续发展。     

Urea denaturation of the immobilized proteases of Streptomyces griseus (pronase)

The protease preparation (pronase, EC 3.4. group) from Streptomyces griseus has been covalently immobilized on porous succinamidopropyl glass using a carbodiimide carboxyl activation procedure. The separate activities of the individual proteases in this preparation were assayed using specific synthetic substrates. Stabilities of both soluble and immobilized preparations were determined and compared by assaying for each activity in urea solutions of various concentration. The loss of activity by the immobilized enzymes was shown to be reversible under most conditions. Analysis of the data in terms of a two-state transition showed that the urea concentration resulting in 50% loss of activity was increased for each enzyme as a result of immobilization. Also the m-value in the relation ΔG_D = ΔG^H₂O_D - m[urea] decreased for each enzyme upon immobilization. Thus, all of the enzymes were stabilized by immobilization and the apparent broadening of the transitions, as measured by the decreased m-value, was interpreted as the formation of a population of molecules with different stabilities. The degree of apparent stabilization upon immobilization varied with the magnitude decreasing as: aminopeptidases > carboxypeptidase ? trypsin > proteases A and B. Furthermore, it is suggested that stabilization may result from multipoint attachment since the magnitude was correlated with the number of potential enzyme reaction sites as reflected by their lysine contents.     

Improvement of the stability and selectivity of Rhizomucor miehei lipase immobilized on silica nanoparticles: Selective hydrolysis of fish oil using immobilized preparations

We report the effect of random and oriented immobilization of Rhizomucor miehei lipase (RML) on its functional properties. For this purpose, silica nanoparticles (MCM-41 and SBA-15) were prepared, characterized and functionalized by glycidyloxypropyl trimethoxysilane. Direct immobilization of RML on these supports was performed via the variety of amino acid residues on the surface of RML which promotes random immobilization. To perform oriented immobilization, partial modification of epoxy functionalized supports was carried out by introducing iminodiacetic acid groups followed by addition of Cu²⁺. In this way, immobilization is mainly directed via the most accessible histidine group, followed by intramolecular reaction of the other nucleophilic residues of the enzyme and the remaining epoxy groups on the support. The results showed higher thermal stability for immobilized derivatives compared to the soluble enzyme. Co-solvent stability of the derivatives was also studied in presence of six polar organic solvents (DMSO, THF, acetonitrile, 1-propanol, 2-propanol and dioxane). Influence of the immobilization procedure on activity and selectivity of the immobilized preparations was studied in selective hydrolysis of fish oil. All the derivatives discriminate between cis-5,8,11,14,17-eicosapentaenoic acid (EPA) and cis-4,7,10,13,16,19-docosahexaenoic acid (DHA) in favor of EPA. Remarkable improvement in selectivity was obtained using oriented immobilization of RML.     

Immobilization of the α-amylase of Bacillus amyloliquifaciens TSWK1-1 for the improved biocatalytic properties and solvent tolerance

The α-amylase of Bacillus amyloliquifaciens TSWK1-1 (GenBank Number, GQ121033) was immobilized by various methods, including ionic binding with DEAE cellulose, covalent coupling with gelatin and entrapment in polyacrylamide and agar. The immobilization of the purified enzyme was most effective with the DEAE cellulose followed by gelatin, agar and polyacrylamide. The K _m increased, while V _max decreased upon immobilization on various supports. The temperature and pH profiles broadened, while thermostability and pH stability enhanced after immobilization. The immobilized enzyme exhibited greater activity in various non-ionic surfactants, such as Tween-20, Tween-80 and Triton X-100 and ionic surfactant, SDS. Similarly, the enhanced stability of the immobilized α-amylase in various organic solvents was among the attractive features of the study. The reusability of the immobilized enzyme in terms of operational stability was assessed. The DEAE cellulose immobilized α-amylase retained its initial activity even after 20 consequent cycles. The DEAE cellulose immobilized enzyme hydrolyzed starch with 27 % of efficiency. In summary, the immobilization of B. amyloliquifaciens TSWK1-1 α-amylase with DEAE cellulose appeared most suitable for the improved biocatalytic properties and stability.     

Climate change and biometeorology, the International Society of Biometeorology and its journal: a perspective on the past and a framework for the future

Anthropogenic climate change is inherently a biometeorological issue. As such, it would be reasonably expected that the International Society of Biometeorology (ISB) and its journal, International Journal of Biometeorology (IJB), would have had climate change feature prominently in their activities, articles etc., and to therefore have made a substantial and valuable contribution to the science of the issue. This article presents an analysis of climate change science in ISB and IJB. The analysis focusses on climate-change-related publications by ISB Presidents found through searches of Thomson Reuters Web of Science; contributions to the Intergovernmental Panel on Climate Change’s (IPCC’s) Working Group II (WGII) by ISB Presidents; and climate change-related publications in IJB found through searches of Thomson Reuters Web of Science. The results demonstrate that the ISB, as represented by its recent, current, and future Presidents, is actively engaged in climate change research and the production of scholarly climate change publications. For example, ISB Presidents have contributed as authors to all four IPCC WGII Assessment Reports, with some Presidents having contributed to more than one Assessment Report or several chapters of the one report. Similarly, it is evident that the IJB is increasingly attracting and publishing climate-change-related articles, with such articles generally having greater impact (as indicated by citations) than other IJB articles. Opportunities for the ISB to provide an internal framework for, and showcase, its climate change work are described. Such opportunities, if enacted, would complement the recent creation of two IJB climate change Field Editor positions.     

Characterization and optimization of β-galactosidase immobilization process on a mixed-matrix membrane

β-Galactosidase is an important enzyme catalyzing not only the hydrolysis of lactose to the monosaccharides glucose and galactose but also the transgalactosylation reaction to produce galacto-oligosaccharides (GOS). In this study, β-galactosidase was immobilized by adsorption on a mixed-matrix membrane containing zirconium dioxide. The maximum β-galactosidase adsorbed on these membranes was 1.6 g/m², however, maximal activity was achieved at an enzyme concentration of around 0.5 g/m². The tests conducted to investigate the optimal immobilization parameters suggested that higher immobilization can be achieved under extreme parameters (pH and temperature) but the activity was not retained at such extreme operational parameters. The investigations on immobilized enzymes indicated that no real shift occurred in its optimal temperature after immobilization though the activity in case of immobilized enzyme was better retained at lower temperature (5 °C). A shift of 0.5 unit was observed in optimal pH after immobilization (pH 6.5 to 7). Perhaps the most striking results are the kinetic parameters of the immobilized enzyme; while the Michaelis constant (K_m) value increased almost eight times compared to the free enzyme, the maximum enzyme velocity (V_max) remained almost constant.     

Optimization and evaluation of acetylcholine esterase immobilization on ceramic packing using response surface methodology

In the present attempt a method for the immobilization of acetylcholine esterase (AChE) was developed. In this method, the enzyme was immobilized onto a ceramic cylinder support using a sol–gel–multiwall carbon nanotube (MWCNT) composite. Response surface methodology (RSM) was used for the design and analysis of immobilization experiments. Quadratic mathematical model equations were derived for the prediction of enzyme activity. Then the effects on enzyme activity at 30, 40 and 50 min after process initiation of varying each of two parameters over five levels were investigated. These parameters were the AChE:MWCNT ratio (X₁), and AChE–MWCNT:sol–gel ratio (X₂). The optimum values of X₁ and X₂ for the immobilization of AChE on ceramic packing were found to be 1.07 and 0.43, respectively. Using these optimum parameters it was shown that enzyme immobilization with MWCNTs and sol–gel was more effective than immobilization with sol–gel or graphite and sol–gel. Scanning electron microscopic (SEM) images revealed a porous surface comprised of MWCNT–AChE encapsulated in sol–gel. Furthermore, the system was highly reproducible with standard deviations after three successive assays of 1.88%, 2.11% and 2.13% at 30, 40 and 50 min after process initiation, respectively.     

Preparation and characterization of Rhizopus amyloglucosidase immobilized on poly(o-toluidine)

The starch hydrolyzing enzyme amyloglucosidase (AMG) from Rhizopus was immobilized onto the protonated salt (TS) and basic (TB) forms of chemically synthesized poly(o-toluidine) (POT) using adsorption and covalent binding. The polymers were activated with glutaraldehyde prior to covalent bonding. The immobilization efficiency was affected by the pH of the immobilization medium, contact time and amount of enzyme. After immobilization, the pH and temperature were changed to conditions under which the enzyme is most active. Immobilized AMG was more stable with respect to changes in pH and increases in temperature compared to free AMG. The immobilized enzyme retained high catalytic activity after multiple uses and showed enhanced stability with storage compared to free enzyme.     

Effect of serum concentration on retroviral vector production from the amphotropic ψCRIP murine producer cells

The production of ethanol by Saccharomyces cerevisiae immobilized cells and its esterification with oleic acid, catalysed by a lipase from Rhizomucor miehei, was the biochemical process considered as model to illustrate the concept of extractive biocatalysis. The selection of the most suitable support for lipase immobilization was carried out. The best results for the ethanol/oleic acid esterification reaction were obtained with the lipase adsorbed on a polyamide type support, Accurel EP 700. The immobilization method was optimized in terms of immobilization pH, contact time and protein/support ratio. The better performances of the extractive fermentations of ethanol were obtained when entrapped k-carrageenan Saccharomyces cerevisiae cells and a lipase from Rhizomucor miehei, free or immobilized in Accurel EP 700, were used simultaneously. The observed reutilization capacity of the immobilized enzyme could be advantageous for its application in a continuous reactor.     

Convenient one-step purification and immobilization of lipase using a genetically encoded aldehyde tag

To avoid the unwanted and random covalent linkage between the cross-linker and enzyme's active site in covalent immobilization, a genetically encoded “aldehyde tag” was introduced into recombinant lipase and applied for the one-step purification and covalent immobilization of this enzyme. The effects of the immobilization time, temperature and the amount of enzyme were investigated, and the thermo-stability of immobilized lipase was also examined. The specific activity and the k_cat/K_m of the immobilized lipase using aldehyde tag (IL-AT) were 2.50 and 3.02 fold higher, respectively, than those of the traditionally immobilized lipase using glutaraldehyde (IL-GA). The newly immobilized lipase also presented better thermo-stability than the traditionally immobilized one. The results show that the recombinant enzyme could be conveniently immobilized without glutaraldehyde and that the enzyme's active site was well protected. This is a new immobilization method able to avoid glutaraldehyde or 2,4,6-trichloro-1,3,5-triazine as an activating agent. The greener method without hazardous chemicals for the one-step purification and immobilization of an enzyme using a genetically encoded “aldehyde tag” can be exploited for numerous other enzyme purification and immobilization applications.     

Optimizing immobilization on two-dimensional carboxyl surface: pH dependence of antibody orientation and antigen binding capacity

The performance of immunosensors is highly dependent on the amount of immobilized antibodies and their remaining antigen binding capacity. In this work, a method for immobilization of antibodies on a two-dimensional carboxyl surface has been optimized using quartz crystal microbalance biosensors. We show that successful immobilization is highly dependent on surface pK_a, antibody pI, and pH of immobilization buffer. By the use of EDC/sulfo-NHS (1-ethyl-3-[3-dimethylaminopropyl] carbodiimide hydrochloride/N-hydroxysulfosuccinimide) activation reagents, the effect of the intrinsic surface pK_a is avoided and immobilization at very low pH is therefore possible, and this is important for immobilization of acidic proteins. Antigen binding capacity as a function of immobilization pH was studied. In most cases, the antigen binding capacity followed the immobilization response. However, the antigen-to-antibody binding ratio differed between the antibodies investigated, and for one of the antibodies the antigen binding capacity was significantly lower than expected from immobilization in a certain pH range. Tests with anti-Fc and anti-Fab₂ antibodies on different antibody surfaces indicated that the orientation of the antibodies on the surface had a profound effect on the antigen binding capacity of the immobilized antibodies.     

Trends in HSPB5 research: a 36-year bibliometric analysis

HSPB5 (heat shock protein B5), also known as αB-crystallin, is one of the most widespread and populous of the ten human small heat shock proteins (sHsps). Over the past decades, extensive research has been conducted on HSPB5. However, few studies have statistically analyzed these publications. Herein, we conducted a bibliometric analysis to track the global research trend and current development status of HSPB5 research from the Web of Science Core Collection (WoSCC) database between 1985 and 2020. Our results demonstrate that 1220 original articles cited 54,778 times in 391 scholarly journals were published. Visualization analyses reveal that the Journal of Biological Chemistry was the most influential journal with 85 articles. The USA dominated this field with 520 publications (42.62%), followed by Japan with 149 publications (12.21%), and Kato contributed the largest number of publications. Most related publications were published in journals focusing on biochemistry molecular biology, cell biology, neurosciences neurology, and ophthalmology. In addition, keyword co-occurrence analyses identify three predominant research topics: expression of HSPB5, chaperone studies for HSPB5, and pathological studies of HSPB5. This study provides valuable guidance for researchers and leads to collaborative opportunities between diverse research interests to be integrated for HSPB5 research.Supplementary InformationThe online version contains supplementary material available at 10.1007/s12192-021-01220-6.