Topography of nucleic acid helices in solutions. II. Structure of the double-stranded rA-rU, rI-rC, acid rA, and the triple-stranded rA-rU2 and rA-rI2 helices

Information concerning the structures of rA–rU, rA–rU₂ rI–rC, rA–rI₂, and acid rA helices in solutions is reported. Through the use of diquaternary ammonium salts of the general structure, \documentclass{article}\pagestyle{empty}\begin{document}$ {\rm R}_1 {\rm R}_2 {\rm R}_3 \mathop {\rm N}\limits^ + ({\rm CH}_2 )n\mathop {\rm N}\limits^ + {\rm R}_1 {\rm R}_2 {\rm R}_3 \cdot 2{\rm Br}^ - $\end{document} (I), it is shown that (1) the distances between adjacent negatively charged oxygen atoms on the helix increases in the following order rA–rI₂ < rI–rC < rA–rU ? rA–rU₂; (2) the density of the helices increases in the order. rA–rI₂ < rA–rU < rA–rU₂ < rI–rC; (3) there is a large hydrophobia site in rA–rI₂ and possibly also in rA–rU, rA–rU₂, and rI–rC helices; (4) the results of the interactions between the salts of type I and the helices may be formulated in semi-quantitative terms by the use of two parameters, α, and β which are shown to be related to the charge separation and the density of the helices, respectively; (5) the studies in solutions compare favorably with the x-ray studies on the fibers; and (6) the acid rA helix differs significantly from the other helices by the fact that the electrostatic interstrand interactions between the negatively charged oxygen atom of a phosphate group and the positively charged 10-amino group of adenine contribute significantly to the stabilization of the helix, and thus it is found that the presence of the salts, I, leads to a significant destabilization of the acid rA helix.     

Morphometric diffusing capacity and functional anatomy of the book lungs in the spider Tegenaria spp. (Agelenidae)

The presence of both book lungs and a tracheal system in many spiders raises the question of the functional significance of this double respiratory system. The present physiological and morphometric study of the house spider (Tegenaria spp.) reveals that the diffusing capacity (Dto₂) of the lungs alone suffices during rest and following exercise to meet measured rates of oxygen consumption (\documentclass{article}\pagestyle{empty}\begin{document}$ \mathop {\rm V}\limits^{\rm.} $\end{document}o₂) at driving pressures (ΔPto ₂) similar to those calculated for vertebrate lungs. During moulting ΔPto ₂ may rise to more than double the vertebrate values, implying the possible insufficiency of book lungs during this critical life phase. Resting \documentclass{article}\pagestyle{empty}\begin{document}$ \mathop {\rm V}\limits^{\rm .} $\end{document}o₂ is greatest (92 mm³/h · g) during the early morning and lowest (66 mm³/h · g) near midday: during moulting \documentclass{article}\pagestyle{empty}\begin{document}$ \mathop {\rm V}\limits^{\rm .} $\end{document}o₂ rises to 278.7 mm³/h · g. In spiders recovering from exercise \documentclass{article}\pagestyle{empty}\begin{document}$ \mathop {\rm V}\limits^{\rm .} $\end{document}o₂ is consistently greater than during rest: neither value is significantly reduced by blockage of the tracheal stigmas. Regression calculations of morphometric values for a hypothetical 100-mg Tegenaria yield a total lung volume of 0.578 mm³, a pulmonary surface area of 69.8 mm², and a surface-to-volume ratio of 120.89 mm²/mm³. In spite of the similar thickness of the chitinous and hypodermal components of the air-hemolymph barrier (each ca. 0.2 μm in nonmoulting animals), the low permeability of chitin for oxygen makes this layer the greater barrier to diffusion. For a 100-mg specimen Dto₂ is 3.5 mm³/h · torr: similar to that of a turtle (Pseudemys) on a gram-body weight basis.     

Sequence and age of eruption of deciduous dentition in the baboon (Papio sp)

A detailed eruption sequence and associated age of eruption for deciduous dentition in baboons (Papio sp) are presented in this paper. The sequence was determined by evaluation and comparison of the number and kinds of teeth present in nine age cohorts comprising the study sample of 88 males and 87 females who ranged in age from birth to 763 days. Eruption was assessed visually as present or absent. Several statistical methods used to derive the ages associated with the eruption sequence are described. The basic eruption sequence in the sample population is: i¹ i₁, i₂, i², \documentclass{article}\pagestyle{empty}\begin{document}$ \mathop {\rm c}\limits_{\rm -} {\rm,}\mathop {\rm c}\limits^{\rm -} $\end{document} m¹ (m², m₂), M₁, M¹. Both sexes show the same pattern, with the exception of the second deciduous molar, where males show a sequence of m₂, m₂, while females show the opposite. Posterior dentition shows the greatest gender-specific variation in average age of eruption.     

Transient method for proposing the mechanisms of reactions over immobilized enzymes

The transient response method is introduced to elucidate the mechanism of reaction over immobilized enzyme. Glucose oxidation over the glucose oxidase that was immobilized on ion-exchange resin using glutaraldehyde as a linking agent is selected as an example here. The transient responses of a fixed-bed reactor to step increases and decreases in glucose, oxygen, and gluconolactone feed concentrations have been monitored and interpreted. From some responses, we have found that gluconolactone is formed in the reaction of glucose with adsorbed oxygen, while hydrogen peroxide is formed in the reaction of oxygen with adsorbed glucose. Combining all information from interpreting the responses with the literature, a mechanistic picture can be obtained as follows: \documentclass{article}\pagestyle{empty}\begin{document}$$ \begin{array}{*{20}c} {E_{{\rm ox}} + G \to E_{{\rm red}} GL} \\ {E_{{\rm red}} GL \to E_{{\rm red}} + GL} \\ {E_{{\rm red}} + {\rm O}_2 \to E_{{\rm ox}} {\rm H}_2 {\rm O}_2 } \\ {E_{{\rm ox}} {\rm H}_2 {\rm O}_2 \to E_{{\rm ox}} + {\rm H}_2 {\rm O}_2 } \\ \end{array} $$\end{document}.     

Modellierung der enzymatischen Cellobiosehydrolyse – Vergleich linearer und nichtlinearer Parameterbestimmung

Experimental kinetic data (initial rate and high conversion) on the hydrolysis of cellobiose by 1,4-β-glucosidace (Gliocladium sp.) have been analysed and a competitive inhibition by glucose has been proposed. The determination of kinetic parameters from integral data is based upon algorithms for non-linear optimization and numerical integration. The values of kinetic constants \documentclass{article}\pagestyle{empty}\begin{document}$(v_{\max } = 1.02\frac{{\mu {\rm M}_{{\rm glucose}} }}{{{\rm mg}_{{\rm protein}} \cdot \min }},K_M = 2.6{\rm mM/l, and }K_P = 1.2{\rm mM/l)}$\end{document} agree well with the initialrate results. An important distinction is the confidence limit of parameters. Linear regression analysis shows a virtual accuracy and can lead to wrong conclusions.     

Kinetics of ethanol inhibition in alcohol fermentation

The inhibitory effect of ethanol on yeast growth and fermentation has been studied for the strain Saccharomyces cerevisiae ATCC No. 4126 under anaerobic batch conditions. The results obtained reveal that there is no striking difference between the response of growth and ethanol fermentation. Two kinetic models are also proposed to describe the kinetic pattern of ethanol inhibition on the specific rates of growth and ethanol fermentation: \documentclass{article}\pagestyle{empty}\begin{document}$$\begin{array}{*{20}c} {\frac{{\mu _i }}{{\mu _0 }} = 1{\rm } - {\rm }\left( {\frac{P}{{P_m }}} \right);\alpha } \hfill & {\left( {{\rm for}\ {\rm growth}} \right)} \hfill \\ {\frac{{\nu _i }}{{\nu _0 }} = 1{\rm } - {\rm }\left( {\frac{P}{{P'_m }}} \right);\beta } \hfill & {\left( {{\rm for}\ {\rm ethanol}\ {\rm production}} \right)} \hfill \\ \end{array}$$\end{document} The maximum allowable ethanol concentration above which cells do not grow was predicted to be 112 g/L. The ethanol-producing capability of the cells was completely inhibited at 115 g/L ethanol. The proposed models appear to accurately represent the experimental data obtained in this study and the literature data.     

Loss of ncm<Superscript>5</Superscript> and mcm<Superscript>5</Superscript> wobble uridine side chains results in an altered metabolic profile

Introduction

The Elongator complex, comprising six subunits (Elp1p-Elp6p), is required for formation of 5-carbamoylmethyl (ncm⁵) and 5-methoxycarbonylmethyl (mcm⁵) side chains on wobble uridines in 11 out of 42 tRNA species in Saccharomyces cerevisiae. Loss of these side chains reduces the efficiency of tRNA decoding during translation, resulting in pleiotropic phenotypes. Overexpression of hypomodified \( {\text {tRNA}_{{\rm s^{2} {\rm UUU}}}^{{\rm Lys}} , {\rm tRNA}_{{\rm s^{2} {\rm UUG}}}^{{\rm Gln }} \;{\rm and}\;{\rm tRNA}_{{\rm s^{2} {\rm UUC}}}^{{\rm Glu}}} \), which in wild-type strains are modified with mcm⁵s²U, partially suppress phenotypes of an elp3Δ strain.

Objectives

To identify metabolic alterations in an elp3Δ strain and elucidate whether these metabolic alterations are suppressed by overexpression of hypomodified \( {\text {tRNA}_{{\rm s^{2} {\rm UUU}}}^{{\rm Lys}} , {\rm tRNA}_{{\rm s^{2} {\rm UUG}}}^{{\rm Gln }} \;{\rm and}\;{\rm tRNA}_{{\rm s^{2} {\rm UUC}}}^{{\rm Glu}}} \).

Method

Metabolic profiles were obtained using untargeted GC-TOF-MS of a temperature-sensitive elp3Δ strain carrying either an empty low-copy vector, an empty high-copy vector, a low-copy vector harboring the wild-type ELP3 gene, or a high-copy vector overexpressing \( {\text {tRNA}_{{\rm s^{2} {\rm UUU}}}^{{\rm Lys}} , {\rm tRNA}_{{\rm s^{2} {\rm UUG}}}^{{\rm Gln }} \;{\rm and}\;{\rm tRNA}_{{\rm s^{2} {\rm UUC}}}^{{\rm Glu}}} \). The temperature sensitive elp3Δ strain derivatives were cultivated at permissive (30 °C) or semi-permissive (34 °C) growth conditions.

Results

Culturing an elp3Δ strain at 30 or 34 °C resulted in altered metabolism of 36 and 46 %, respectively, of all metabolites detected when compared to an elp3Δ strain carrying the wild-type ELP3 gene. Overexpression of hypomodified \( {\text {tRNA}_{{\rm s^{2} {\rm UUU}}}^{{\rm Lys}} , {\rm tRNA}_{{\rm s^{2} {\rm UUG}}}^{{\rm Gln }} \;{\rm and}\;{\rm tRNA}_{{\rm s^{2} {\rm UUC}}}^{{\rm Glu}}} \) suppressed a subset of the metabolic alterations observed in the elp3Δ strain.

Conclusion

Our results suggest that the presence of ncm⁵- and mcm⁵-side chains on wobble uridines in tRNA are important for metabolic homeostasis.

     

Viscosity of heparin as a function of dielectric constant and of desulfation

The effect of dielectric constant (D) of the solvent on the viscosity of heparin was examined using the relation \documentclass{article}\pagestyle{empty}\begin{document}$ \eta _{{\rm sp}} /c = [\eta ]_\infty (1 + k/\sqrt c) $\end{document}, where [η]_∞ is the shielded intrinsic viscosity obtained by extrapolating \documentclass{article}\pagestyle{empty}\begin{document}$ \eta _{{\rm sp}} /c\,{\rm vs}{\rm . }\,1/\sqrt c ) $\end{document} to infinite concentration, and k is an interaction parameter independent of the dielectric constant of the solvent. This equation was previously reported by the authors⁹ for describing the reduced viscosities of strong polyelectrolytes in salt-free polar solvents. It was found that the [η]_∞ of heparin increases linearly with increasing dielectric constant of the solvent whereas the k values were, within experimental error, independent of D in the range 54.7 < D < 93.2 examined. Graded hydrolysis of heparin from its acid form (heparinic acid) at 57°C resulted in samples of varying degree of desulfation with corresponding decrease in biological activity. It was found that both [η]_∞ and k decrease with increasing desulfation.     

Influence of anions on metal adsorption by Rhizopus arrhizus biomass

The presence of anions in solution was found to inhibit the uptake of La(3+), Cd(2+), Pb(2+), UO(2+) (2), and Ag(+) by Rhizopus arrhizus biomass. The effects ranged from total inhibition of Cd(2+) and Pb(2+) uptake at equimolar concentrations of EDTA to no change in uptake of La(3+) or UO(2+) (2) at 12-fold molar excesses of Cl(-) or CO(2-) (3). No anion was found to enhance metal uptake levels, and the degree of inhibition generally followed the series: \documentclass{article}\pagestyle{empty}\begin{document}$${\rm EDTA } \ge \ge {\rm SO}_{;{;{;{\rm 4} } } };{{\rm 2} - } \ge {\rm Cl}; - \ge {\rm PO}_{;{;{;{\rm 4} } } };{{\rm 3} - } \ge {\rm glutamate} \ge {\rm CO}_{;{;{\rm 3} } };{{\rm 2} - } $$\end{document} The chemical equilibrium model REDEQL2 was adapted to treat metal uptake by R. arrhizus biomass and used to predict the effects of anions in solution. Comparisons with the experimental results are made and discussed in light of the assumptions underlying the model.     

Hydrogen Concentration and Stable Isotopic Composition of Methane in Bubble Gas Observed in a Natural Wetland

Bubble gas samples were collected at three different vegetation sites and two different depths (surface and 40 cm) in a natural wetland, Mizorogaike in Kyoto city, to investigate hydrogen concentration and δD and δ¹³C values of CH₄. Hydrogen concentration in bubble gas varied from 1 to 205 ppm, and that collected during summer was higher than that during winter. Bubble samples collected at 40 cm at sphagnum site usually showed the lowest H₂ concentration among the samples collected at the three sites and two depths on the same day. The lowest H₂ concentration observed at 40 cm at sphagnum site was similar to that expected for environmental water in which H₂ producer and consumer need to assemble for free energy requirement. Low δ¹³C and high δD (relatively small hydrogen fractionation; ‰) were observed in CH₄ collected at a deeper (40 cm) layer of sphagnum site during winter, when H₂ concentration was low (typically 2–4 ppm). On the other hand, CH₄ in the bubble samples collected during summer showed high δ¹³C and low δD (relatively large hydrogen fractionation; ‰), when H₂ concentration was high. Carbon and hydrogen isotope fractionation during CH₄ production were variable, possibly depending on the H₂ concentration and the production rate. Difference in enzymatic reaction and magnitude of hydrogen isotope exchange among water, CH₄, and H₂ may cause the variation in isotope fractionation during CH₄ production.     

Shifts of thermogenesis in the prairie vole (Microtus ochrogaster)

Summary The weight-specific oxygen consumption ( ) of prairie voles caught in winter is 24% higher at 27.5° C and 29% higher at 7.5° C than that of summer animals, thus affording a higher weight-specific thermogenesis in winter than in summer which may allow tolerance to lower thermal exposures. Coincident with the increase in weight-specific rates of oxygen consumption is a decrease in body weight. When total energetic cost to maintain an animal per unit time is calculated, the cost at 27.5° C is the same for both summer and winter animals. Further, the cost to maintain an animal at 7.5° C is less in winter than in summer. Arguments are presented suggesting that prairie voles compensate for increased weight-specific thermogenesis in winter by lowering body weight. The responses to thermal acclimation are quite different in summer and winter animals, thus implying different sorts of metabolic organization. Acclimation to 5° C effects a 26% increase in at 27.5° C of winter voles, and acclimation to 30° C does not change . In contrast, at 27.5° C of summer animals is unaffected by 5° C acclimation, and depressed 20% by 30° C acclimation. Thus, the animals are capable of considerable physiological adjustment to varying thermal conditions in different seasons.     

The nucleotide sequence ofBeneckea harveyi 5S rRNA

Summary The complete sequence of the 5S rRNA from the bioluminescent bacterium,Beneckea harveyi has been determined to be p U G C U U G G C G C C A U A G C G A U U-G G A C C C A C U G A (U) C U U C A U U C C-G A A C C A G A A G U G A A C G A A U U A-G G C C G A U G G U G U G U G G G G C U-C C C C A U G U A G A G U A G G A A U C G-C C A G G U (U)_OH.Two sites of sensitivity to ribonuclease T₂ cleavage were identified; at A₄₁ and either A₅₄ or A₅₅. Comparison with existing sequence information fromEscherichia coli andPhotobacterium phosphoreum clarifies the amount of diversity among the bioluminescent bacteria and provides further insight into their phylogenetic position. Sequence heterogeneities were encountered and the importance of these in interpreting 5S rRNA data is discussed.     

Quantifying Lipari–Szabo modelfree parameters from 13CO NMR relaxation experiments

It is proposed to obtain effective Lipari–Szabo order parameters and local correlation times for relaxation vectors of protein ¹³CO nuclei by carrying out a ¹³CO-R₁ auto relaxation experiment, a transverse CSA/dipolar cross correlation and a transverse ¹³CO CSA/¹³CO–¹⁵N CSA/dipolar cross correlation experiment. Given the global rotational correlation time from ¹⁵N relaxation experiments, a new program COMFORD (CO-Modelfree Fitting Of Relaxation Data) is presented to fit the ¹³CO data to an effective order parameter , an effective local correlation time and the orientation of the CSA tensor with respect to the molecular frame. It is shown that the effective is least sensitive to rotational fluctuations about an imaginary axis and most sensitive to rotational fluctuations about an imaginary axis parallel to the NH bond direction. As such, the information is fully complementary to the ¹⁵N relaxation order parameter, which is least sensitive to fluctuations about the NH axis and most sensitive to fluctuations about the axis. The new paradigm is applied on data of Ca²⁺ saturated Calmodulin, and on available literature data for Ubiquitin. Our data indicate that the order parameters rapport on slower, and sometimes different, motions than the ¹⁵N relaxation order parameters. The CO local correlation times correlate well with the calmodulin’s secondary structure. Electronic Supplementary Material Supplementary material is available to authorized users in the online version of this article at .     

Litterfall and litter nutrient dynamics under cocoa ecosystems in lowland humid Ghana

There have been few studies quantifying litterfall, standing litterstock and gross litter decomposition following forest conversion to plantation crops such as cocoa. Additionally, an assessment of changing processes occurring in forest floor litter systems with plantation age is lacking. We investigated litterfall production, standing litter changes and litter decomposition along a chronosequence of shaded cocoa farm fields (secondary forest, 3, 15 and 30-year-old) in the moist semi-deciduous forest belt in the Ashanti Region of Ghana in West Africa over 24 months. Mean annual litterfall production differed significantly among study sites and ranged from 5.0 to 10.4 Mg DM ha^?1. Similarly, standing litter differed significantly between land-use /plot ages. The results showed significant differences in quality between litter from forest and litter from cocoa plantations. Litterfall from forests had higher concentrations of nitrogen and lower concentration of soluble polyphenols and lignin compared to litter from cocoa systems. Monthly decomposition coefficients (k) estimated as $ k = {{\left( {{\text{A}} - \left( {{\text{L}}_1 - {\text{L}}_0 } \right)} \right)} \mathord{\left/ {\vphantom {{\left( {{\text{A}} - \left( {{\text{L}}_1 - {\text{L}}_0 } \right)} \right)} {\left( {{{\left( {{\text{L}}_1 + {\text{L}}_0 } \right)} \mathord{\left/ {\vphantom {{\left( {{\text{L}}_1 + {\text{L}}_0 } \right)} 2}} \right. } 2}} \right)}}} \right. } {\left( {{{\left( {{\text{L}}_1 + {\text{L}}_0 } \right)} \mathord{\left/ {\vphantom {{\left( {{\text{L}}_1 + {\text{L}}_0 } \right)} 2}} \right. } 2}} \right)}} $ , where A is litterfall production during the month, L₀ is the standing litterstock at the beginning of the month and L₁ is the standing litterstock at the end of the month. Annual decomposition coefficients (k _L ) were similar in cocoa systems (0.221–0.227) but higher under secondary forests (0.354). Correlations between litter quality parameters and the decomposition coefficient showed nitrogen and lignin concentrations as well as ratios that include nitrogen are the best predictors of decomposition for the litters studied. Our results confirm the hypothesis that decomposition decreases following forest conversion to shaded cocoa systems because of litter quality changes and that decomposition rates correlate to litter quality differences between forest and cocoa ecosystems. The study also showed that standing litter pools and litterfall production in recently converted cocoa plantations are low compared to secondary forests or mature cocoa systems. Management strategies involving the introduction of upper canopy species during plantation development with corresponding replacement of tree mortality with diverse fast growing species will provide high quality and quantity litter resources.     

Analysis of spatial association between two species based on the interspecies mean crowding

Summary and Conclusion The measurement of spatial association between two species is considered on the basis of interspecies mean crowding. Two indices of overlapping, γ andC _μ, are derived as geometric and weighted arithmetic means of the same component ratios related to inter- and intraspecies mean crowdings. Both indices behave in a similar way, ranging from 1 when the distributions of two species are completely overlapped to 0 when they are completely exclusive with each other. The former is essentially identical with indices proposed byKuno (1968) andPianka (1973), and the latter is a modified form ofMorisita’s (1959)C _δ index. Indices to measure the degree of spatial correlation between species, ω andR _μ, are then derived for both kinds of overlapping indices, which vary from 1 in complete overlapping, through 0 in independent occurrence, to −1 in complete exclusion. Various kinds of interspecies association are analyzed using these indices and an extended form of the regression graph which provides a convenient way of indicating the spatial interrelation between two species as well as distribution patterns of respective species. The method presented in this paper may also be applicable to compare temporal distribution patterns between species, similarity between communities, etc. For such a wider application which includes continuous as well as discrete distributions, the interpretation of intra- and interspecies mean crowdings is not necessarily appropriate, and hence the concept of mean concentration with the symbols and for intraspecies relation and and for interspecies relation is suggested. This study was supported by Science Research Fund (No. 148041) from the Ministry of Education.     

The intramolecular δ<Superscript>15</Superscript>N of lysine responds to respiratory status in <Emphasis Type="Italic">Paracoccus denitrificans</Emphasis>

Summary. Presented here is the first experimental evidence that natural, intramolecular, isotope ratios are sensitive to physiological status, based on observations of intramolecular δ¹⁵N of lysine in the mitochondrial mimic Paracoccus denitrificans. Paracoccus denitrificans, a versatile, gram-negative bacterium, was grown either aerobically or anaerobically on isotopically-characterized ammonium as sole cell-nitrogen source. Nitrogen isotope composition of the biomass with respect to source ammonium was = −6.2 ± 1.2‰ for whole cells under aerobic respiration, whereas cells grown anaerobically produced no net fractionation ( = −0.3 ± 0.23‰). Fractionation of ¹⁵N between protein nitrogen and total cell nitrogen increased during anaerobic respiration and suggests that residual nitrogen-containing compounds in bacterial cell membranes are isotopically lighter under anaerobic respiration. In aerobic cells, the lysine intramolecular difference between peptide and sidechain nitrogen is negligible, but in anaerobic cells was a remarkable Δ¹⁵N_{p − s} = δ¹⁵N_peptide − δ¹⁵N_sidechain = +11.0‰, driven predominantly by enrichment at the peptide N. Consideration of known lysine pathways suggests this to be likely due to enhanced synthesis of peptidoglycans in the anaerobic state. These data indicate that distinct pathway branching ratios associated with microbial respiration can be detected by natural intramolecular Δδ¹⁵N measurements, and are the first in vivo observations of position-specific measurements of nitrogen isotope fractionation.     

Interaction-induced electric (hyper)polarizability in the dihydrogen–neon pair: basis set and electron correlation effects

We investigated the interaction (hyper)polarizability of neon–dihydrogen pairs by performing high-level ab initio calculations with atom/molecule-specific, purpose-oriented Gaussian basis sets. We obtained interaction-induced electric properties at the SCF, MP2, and CCSD levels of theory. At the CCSD level, for the T-shaped configuration, around the respective potential minimum of 6.437 a₀, the interaction-induced mean first hyperpolarizability varies for 5?<? R/a₀?<?10 as

$$ \left[{\overline{\beta}}_{\mathrm{int}}(R)\hbox{-} {\overline{\beta}}_{\mathrm{int}}\left({R}_{\mathrm{e}}\right)\right]/{e}^3{a_0}^3{E_{\mathrm{h}}}^{-2}=-0.91\left(R\hbox{-} {R}_{\mathrm{e}}\right)+0.50{\left(R\hbox{-} {R}_{\mathrm{e}}\right)}^2\hbox{--} 0.13{\left(R\hbox{-} {R}_{\mathrm{e}}\right)}^3+0.01{\left(R\hbox{-} {R}_{\mathrm{e}}\right)}^4. $$

Again, at the CCSD level, but for the L-shaped configuration around the respective potential minimum of 6.572 a₀, this property varies for 5?<? R/a₀?<?10 as

$$ \left[{\overline{\beta}}_{\mathrm{int}}(R)\hbox{-} {\overline{\beta}}_{\mathrm{int}}\left({R}_{\mathrm{e}}\right)\right]/{e}^3{a_0}^3{E_{\mathrm{h}}}^{-2}=-1.33\left(R\hbox{-} {R}_{\mathrm{e}}\right)+0.75{\left(R\hbox{-} {R}_{\mathrm{e}}\right)}^2-0.20{\left(R\hbox{-} {R}_{\mathrm{e}}\right)}^3+0.02{\left(R\hbox{-} {R}_{\mathrm{e}}\right)}^4. $$

Open image in new window

Graphical Abstract Interaction-induced mean dipole polarizability (\( \overline{a} \)) for the T-shaped configuration of H₂–Ne calculated at the SCF, MP2, and CCSD levels of theory

     

Modification of the data-processing method for the turbidimetric bioassay of nisin

The data processing method of the turbidimetric bioassay of nisin was modified to facilitate its industrial application. The influence of the initial indicator concentration was minimized by a redefined specific dose of the bacteriocin as the quotient between the titer of the added bacteriocin and the initial population density of the indicator in the suspension. It was found that d _c = 0.125 μg ml⁻¹ was the critical dose of nisin that can cause a complete inhibition of the indicator, Pediococcus acidilactici UL5, with an initial OD of 0.135. To eliminate the interference of the cell debris, an equation, , exploiting d _c, was formulated to obtain the intrinsic survival proportion. The use of the specific dose of the bacteriocin and the intrinsic survival proportion as parameters of the dose/response curve greatly enhanced its repeatability and feasibility. A dual-dosage approach was developed to further simplify the conventional standard dose/response curve method.     

Energy requirements of Adélie penguin (Pygoscelis adeliae) chicks

Summary The energy requirements of Adélie penguin (Pygoscelis adeliae) chicks were analysed with respect to body mass (W, 0.145–3.35 kg, n=36) and various forms of activity (lying, standing, minor activity, locomotion, walking on a treadmill). Direct respirometry was used to measure O₂ consumption ( ) and CO₂ production. Heart rate (HR, bpm) was recorded from the ECG obtained by both externally attached electrodes and implantable HR-transmitters. The parameters measured were not affected by hand-rearing of the chicks or by implanting transmitters. HR measured in the laboratory and in the field were comparable. Oxygen uptake ranged from in lying chicks to at maximal activity, RQ=0.76. Metabolic rate in small wild chicks (0.14–0.38 kg) was not affected by time of day, nor was their feeding frequency in the colony (Dec 20–21). Regressions of HR on were highly significant (p< 0.0001) in transmitter implanted chicks (n=4), and two relationships are proposed for the pooled data, one for minor activities ( ), and one for walking ( ). Oxygen consumption, mass of the chick (2–3 kg), and duration of walking (T, s) were related as , whereas mass-specific O₂ consumption was related to walking speed (S, m·s^-1) as .Abbreviations bpm beats per minute - D distance walked (m) - ECG electrocardiogram - HR heart rate (bpm) - ns number of steps - RQ respiratory quotient - S walking speed (m·s^-1) - T time walked (s) - W body mass (kg)     

Optical anisotropy of polypeptide chains

Optical anisotropies γ² of N-t-butylacetamide (tBA), N-Methylacetamide (MA), and N, N-dimethylacetamide (DMA) have been determined from the Rayleigh ratios for depolarzed scattering by dilute solutions of the amides in p-dioxane. Traceless optical polarizability tensors \documentclass{article}\pagestyle{empty}\begin{document}$ \widehat{\rm \alpha } $\end{document} for the amides are derived from these results in conjunction with the Kerr constant for tBA determined by LeGèvre and co-workers. It is shown that the tensor \documentclass{article}\pagestyle{empty}\begin{document}$ \widehat{\rm \alpha } $\end{document}_i for the glycyle unit in a polypeptide chain may be identified with \documentclass{article}\pagestyle{empty}\begin{document}$ \widehat{\rm \alpha } $\end{document}MA . Methods for deriving corresponding tensors for other peptide units are indicated and the traceless polarizability tensor \documentclass{article}\pagestyle{empty}\begin{document}$ \widehat{\rm \alpha } $\end{document} for a polypeptide chain in any specified configuration is formulated.