Effects of Photosynthesis on Bacterial Phosphatase Production in Biofilms

The fraction of bacteria displaying phosphatase activity within natural photosynthetic biofilms was examined in relation to phosphorus limitation and algal photosynthesis. An artificial substrate that forms a fluorescent precipitate was used in conjunction with the nucleic acid stain DAPI to enumerate extracellular phosphatase expression by biofilm bacteria exposed to different photosynthetic activities and phosphorus supplies. The proportion of bacteria displaying phosphatase activity changed in response to the presence or absence of algal photosynthesis. In general, phosphate-deprived biofilms had positive linear trends in bacterial phosphatase activity (p <0.001), with greater proportions of bacteria displaying phosphatase under photosynthetic inhibition compared to active photosynthesis. Under sufficient phosphate supplies, biofilms had negative linear trends (p <0.05) or were lower in the proportion of bacteria displaying phosphatase activity in the presence of algal photosynthesis, whereas bacterial phosphatase activity was generally maintained when photosynthesis was inhibited. it is suggested that the amount of extracellular organic carbon released within the biofilm matrix during photosynthesis indirectly affected bacterial phosphatase synthesis.     

Analysis of the bacterial strains using Biolog plates in the contaminated soil from Riyadh community

Routine manufacture, detonation and disposal of explosives in land and groundwater have resulted in complete pollution. Explosives are xenobiotic compounds, being toxic to biological systems, and their recalcitrance leads to persistence in the environment. The methods currently used for the remediation of explosive contaminated sites are expensive and can result in the formation of toxic products. The present study aimed to investigate the bacterial strains using the Biolog plates in the soil from the Riyadh community. The microbial strains were isolated using the spread plate technique and were identified using the Biolog method. In this study we have analyzed from bacterial families of soil samples, obtained from the different sites in 5 regions at Explosive Institute. Our results conclude that Biolog MicroPlates were developed for the rapid identification of bacterial isolates by sole-carbon source utilization and can be used for the identification of bacteria. Out of five communities, only four families of bacteria indicate that the microbial community lacks significant diversity in region one from the Riyadh community in Saudi Arabia. More studies are needed to be carried out in different regions to validate our results.     

苜蓿国际发展态势分析

苜蓿是草食动物的优质饲草, 被誉为“牧草之王”。发展苜蓿产业对提升我国草食畜牧业具有重要意义。该研究采用定性调研与定量分析相结合的方法, 从创新链角度, 研究了全球苜蓿科技产出、代表性国家苜蓿产业格局和全球苜蓿市场贸易等状况及我国苜蓿产业存在的问题, 旨在为我国苜蓿产业发展提供参考。分析发现, 美国是全球最重要的苜蓿生产国, 在苜蓿基础研究、技术开发、品种培育和商业化种植等方面均具有很强的优势, 引领了全球苜蓿产业的发展。欧美等跨国企业掌控着全球苜蓿产业链的各个关键环节, 是苜蓿产品的主要出口市场, 而亚洲苜蓿产品消费缺口最大。近10年来, 我国在苜蓿科技领域表现活跃, 科技成果产出呈快速增长趋势, 但在成果数量和影响力方面与欧美国家差距明显, 且苜蓿育种进程缓慢, 优质苜蓿产品对外依存度仍然较高。综合来看, 我国应持续加大苜蓿的研发力度和科技投入, 推进苜蓿产业化发展, 提升苜蓿产品的自给率, 保障草食畜牧业健康、稳定发展。     

P700氧化还原动力学的测量方法及原理

P700氧化还原动力学技术可快速且无损地检测植物光系统I (PSI)的活性, 是光合研究领域中广泛使用的一种技术。该文系统归纳了P700氧化还原动力学的主要测量方法, 详细阐述其原理并探讨该技术的局限性, 旨在为深入研究光合作用机理提供技术支持。     

Aerobic anoxygenic photosynthesis genes and operons in uncultured bacteria in the Delaware River

Photosynthesis genes and operons of aerobic anoxygenic photosynthetic (AAP) bacteria have been examined in a variety of marine habitats, but genomic information about freshwater AAP bacteria is lacking. The goal of this study was to examine photosynthesis genes of AAP bacteria in the Delaware River. In a fosmid library, we found two clones bearing photosynthesis gene clusters with unique gene content and organization. Both clones contained 37 open reading frames, with most of those genes encoding known AAP bacterial proteins. The genes in one fosmid were most closely related to those of AAP bacteria in the Rhodobacter genus. The genes of the other clone were related to those of freshwater beta-proteobacteria. Both clones contained the acsF gene, which is required for aerobic bacteriochlorophyll synthesis, suggesting that these bacteria are not anaerobes. The beta-proteobacterial fosmid has the puf operon B-A-L-M-C and is the first example of an uncultured bacterium with this operon structure. The alpha-3-proteobacterial fosmid has a rare gene order (Q-B-A-L-M-X), previously observed only in the Rhodobacter genus. Phylogenetic analyses of photosynthesis genes revealed a possible freshwater cluster of AAP beta-proteobacteria. The data from both Delaware River clones suggest there are groups of freshwater or estuarine AAP bacteria distinct from those found in marine environments.     

Toxic and reactogenic properties of pertussis bacteria (experimental and clinical studies).

The results of the study revealed correlation between the reactogenicity of pertussis vaccines in epidemiological observations and the toxic properties of pertussis bacteria in experiment. Quantitative and qualitative differences were found between the toxic factors in pertussis bacteria depending on their type-specific serological activity. Serotype 1.0.3 microbes exhibit more pronounced toxicity which accounts for the greater reactogenicity of vaccines prepared from this serotype as compared with the preparation produced from the serotype 1.2.3. The obtained results suggest the necessity of considering the greater toxicity of the serotype 1.0.3 in the preparation of pertussis vaccines.     

有害微藻抑藻细菌多样性及抑藻机制研究进展

有害藻暴发能够破坏水生生态系统,对水环境、人类健康及各国经济构成严重威胁。寻找能够有效防治有害藻华或赤潮的方法是现阶段水生生态保护与修复领域的重要研究内容之一。其中,微生物因其分布广、种类多和易繁殖等特点,在有害藻华或赤潮防治方面表现出巨大潜力,正逐渐得到广泛关注。本文从抑藻细菌分布、物种多样性及抑藻机制(抑藻方式、细胞形态、光合作用和氧化损伤)等角度对当前有害微藻抑藻细菌研究进展进行梳理总结,为微生物控藻提供理论参考。     

Tolerance to Various Toxicants by Marine Bacteria Highly Resistant to Mercury

Bacteria highly resistant to mercury isolated from seawater and sediment samples were tested for growth in the presence of different heavy metals, pesticides, phenol, formaldehyde, formic acid, and trichloroethane to investigate their potential for growth in the presence of a variety of toxic xenobiotics. We hypothesized that bacteria resistant to high concentrations of mercury would have potential capacities to tolerate or possibly degrade a variety of toxic materials and thus would be important in environmental pollution bioremediation. The mercury-resistant bacteria were found to belong to Pseudomonas, Proteus, Xanthomonas, Alteromonas, Aeromonas, and Enterobacteriaceae. All these environmental bacterial strains tolerant to mercury used in this study were capable of growth at a far higher concentration (50 ppm) of mercury than previously reported. Likewise, their ability to grow in the presence of toxic xenobiotics, either singly or in combination, was superior to that of bacteria incapable of growth in media containing 5 ppm mercury. Plasmid-curing assays done in this study ascertained that resistance to mercury antibiotics, and toxic xenobiotics is mediated by chromosomally borne genes and/or transposable elements rather than by plasmids.     

Aerobic anoxygenic photosynthetic bacteria with zinc-bacteriochlorophyll

Naturally occurring chlorophyllous pigments, which function as the cofactor in the early photochemical reaction of photosynthesis, have been proven beyond question to be magnesium-complexed porphyrin derivatives. Phototrophic organisms that use (bacterio)chlorophylls ([B]Chls) containing metals other than Mg were unknown for a long time. This common knowledge of natural photosynthesis has recently been modified by the striking finding that a novel purple pigment, zinc-chelated-BChl (Zn-BChl) a, is present as the major and functional pigment in species of the genus Acidiphilium. Acidiphilium species are obligately acidophilic chemoorganotrophic bacteria that grow and produce photopigments only under aerobic conditions. Although the mechanism of photosynthesis with Zn-BChl a in Acidiphilium species is similar to that seen in common purple bacteria, some characteristic photosynthetic features of the acidophilic bacteria are also found. The discovery of natural photosynthesis with Zn-BChl has not only provided a new insight into our understanding of bacterial photosynthesis but also raised some interesting questions to be clarified. The major questions are why the acidophilic bacteria have selected Zn-BChl for their photosynthesis and how they synthesize Zn-BChl and express photosynthetic activity with it in their natural habitats. In this article we review the current knowledge of the biology of Acidiphilium as aerobic photosynthetic bacteria with Zn-BChl a and discuss the interesting topics noted above.     

紫细菌光合机构及光合作用基因的表达调控

紫细菌是研究细菌光合作用的重要生物.介绍了紫细菌光合机构捕光色素蛋白复合体Ⅰ(light-harvestingⅠ)、捕光色素蛋白复合体Ⅱ(1ight-harvesting Ⅱ)和光化学反应中心(reaction center)的结构,并探讨了其光合作用基因的转录调控机制,重点阐述了PpsR/AppA系统对紫细菌光合作用基因的转录调控.     

紫细菌光合机构及光合作用基因的表达调控

紫细菌是研究细菌光合作用的重要生物。介绍了紫细菌光合机构捕光色素蛋白复合体Ⅰ(light-harvesting I)、捕光色素蛋白复合体Ⅱ(light-harvesting II)和光化学反应中心(reaction center)的结构, 并探讨了其光合作用基因的转录调控机制, 重点阐述了PpsR/AppA系统对紫细菌光合作用基因的转录调控。     

Toxic and non-toxic Nodularia strains can be distinguished from each other and from eukaryotic algae with chlorophyll fluorescence fingerprinting

Chlorophyll fluorescence induction curves of toxic and non-toxic strains of the cyanobacterium Nodularia were measured and compared with fluorescence curves measured from four species of eukaryotic algae. Both cyanobacteria and algae were isolated from the Baltic Sea. The results show that Nodularia strains can be distinguished from the eukaryotes by applying a pattern recognition procedure to the fluorescence induction curves, suggesting that the fluorescence fingerprinting technique might be useful in environmental monitoring of marine algae. The six studied Nodularia strains could not be distinguished from each other from their fluorescence induction kinetics. However, their fluorescence curves fell into two clear categories, the toxic and the non-toxic Nodularia. Emission spectroscopy and differences in the fluorescence induction curves showed that the ratio of the intensity of the Photosystem I emission peak to the Photosystem II peak is higher in non-toxic Nodularia than in the toxic strains, suggesting that the toxicity affects the structure of the photosynthesis machinery. The effect on photosynthesis may be related to the ability of the microcystins to chelate iron.     

Copper cofactor delivery in plant cells

Copper (Cu) is a micronutrient that has roles in photosynthesis, respiration, antioxidant activity, cell wall metabolism and hormone perception. Excess Cu is toxic and therefore its delivery has to be tightly regulated. Recent progress in the study of Cu homeostasis has revealed not only components of the Cu delivery machinery but also regulatory systems that control Cu-protein expression and coordinate the activity of Cu-delivery systems. The response of photosynthetic organisms to Cu deficiency indicates the existence of cross-talk between metal cofactor delivery pathways. Next to its well-established roles in plant metabolism, a novel function for Cu, first discovered in plants, is in the biogenesis of molybdenum cofactor. Defects in Cu delivery factors also suggest important roles for Cu in cell expansion.     

Limiting factors for panicle photosynthesis at the anthesis and grain filling stages in rice (Oryza sativa L.)

Panicle photosynthesis is crucial for grain yield in cereal crops; however, the limiting factors for panicle photosynthesis are poorly understood, greatly impeding improvement in this trait. In the present study, pot experiments were conducted to investigate the limiting factors for panicle photosynthesis at the anthesis stage in seven rice genotypes and to examine the temporal variations in photosynthesis during the grain filling stage in the Liangyou 287 genotype. At the anthesis stage, leaf and panicle photosynthesis was positively correlated with stomatal conductance and maximum carboxylation rate, which were in turn associated with hydraulic conductance and nitrogen content, respectively. Panicle hydraulic conductance was positively correlated with the area of bundle sheaths in the panicle neck. During grain filling, leaf and panicle photosynthesis remained constant at the early stage but dramatically decreased from 8 to 9 days after anthesis. The trends of variations in panicle photosynthesis were consistent with those in stomatal conductance but not with those in maximum carboxylation rate. At first, the maximum carboxylation rate and respiration rate in the panicle increased, through elevated panicle nitrogen content, but then drastically decreased, as a result of dehydration. The present study systematically investigated the limiting factors for panicle photosynthesis, which are vital for improving photosynthesis and crop yield.     

Oxygen-regulated expression of genes for pigment binding proteins in Rhodobacter capsulatus

Oxygen is the major external factor affecting the expression of photosynthesis genes in facultatively photosynthetic bacteria. Many investigations over the last years mainly carried out on the closely related species Rhodobacter capsulatus and Rhodobacter sphaeroides have identified a number of proteins involved in the oxygen-regulated signal pathway, in which the RegB/RegA two component system plays a central role. While the RegB/RegA system activates photosynthesis genes under low oxygen tension other proteins like CrtJ and PPBP have a repressing function under high oxygen tension. Additional DNA binding proteins like the integration host factor can modulate the expression of photosynthesis genes. The role of alternative sigma factors in this signal pathway is still unclear.     

Adaptation of organisms to extreme conditions of deep-sea hydrothermal vents

The deep-sea hydrothermal vents are located along the volcanic ridges and are characterized by extreme conditions such as unique physical properties (temperature, pression), chemical toxicity, and absence of photosynthesis. However, life exists in these particular environments. The primary producers of energy and organic molecules in these biotopes are chimiolithoautotrophic bacteria. Many animals species live in intimate and complex symbiosis with these sulfo-oxidizing and methanogene bacteria. These symbioses imply a strategy of nutrition and a specific metabolic organization involving numerous interactions and metabolic exchanges, between partners. The organisms of these ecosystems have developed different adaptive strategies. In these environments many microorganisms are adapted to high temperatures. Moreover to survive in these environments, living organisms have developed various strategies to protect themselves against toxic molecules such as H2S and heavy metals.     

古尔班通古特沙漠白梭梭枝干光合及其影响因素

植物枝干光合（P_g）固定其自身呼吸所释放的CO₂,有效减少植物向大气的CO₂排放量。以古尔班通古特沙漠优势木本植物白梭梭（Haloxylon persicum）为研究对象,利用LI-COR 6400便携式光合仪与特制光合叶室（P-Chamber）相结合,观测白梭梭叶片、不同径级枝干的光响应及光合日变化特征;同时监测环境因子（大气温湿度、光合有效辐射、土壤温度及含水量等）与叶片/枝干性状指标（叶绿素含量、含水量、干物质含量、碳/氮含量等）,揭示叶片/枝干光合的主要影响因子;采用破坏性取样,量化个体水平上叶片与枝干的总表面积,阐明枝干光合对植株个体碳平衡的贡献。研究结果显示：（1）白梭梭叶片叶绿素含量是枝干叶绿素含量的12-16倍,各径级枝干叶绿素含量差异不显著;（2）枝干光饱和点低于叶片,枝干不同径级（由粗至细）,暗呼吸速率和枝干光合逐渐减小;（3）光合有效辐射、土壤含水量和空气温湿度是影响叶片光合的主要因子,对枝干光合无显著影响;（4）枝干光合可以固定其自身呼吸产生CO₂的73%,最高可达90%,枝干光合固定CO₂约占个体水平固碳量的15.4%。研究结果表明,忽视枝干光合的贡献来预测未来气候变化背景下荒漠生态系统碳过程,可能存在根本性缺陷,并且在估算枝干呼吸时,需要考虑枝干是否存在光合作用,以提高枝干呼吸的准确性。     

Horizontal Transfer of the Photosynthesis Gene Cluster and Operon Rearrangement in Purple Bacteria

A 37-kb photosynthesis gene cluster was sequenced in a photosynthetic bacterium belonging to the beta subclass of purple bacteria (Proteobacteria), Rubrivivax gelatinosus. The cluster contained 12 bacteriochlorophyll biosynthesis genes (bch), 7 carotenoid biosynthesis genes (crt), structural genes for photosynthetic apparatuses (puf and puh), and some other related genes. The gene arrangement was markedly different from those of other purple photosynthetic bacteria, while two superoperonal structures, crtEF-bchCXYZ-puf and bchFNBHLM-lhaA-puhA, were conserved. Molecular phylogenetic analyses of these photosynthesis genes showed that the photosynthesis gene cluster of Rvi. gelatinosus was originated from those of the species belonging to the alpha subclass of purple bacteria. It was concluded that a horizontal transfer of the photosynthesis gene cluster from an ancestral species belonging to the alpha subclass to that of the beta subclass of purple bacteria had occurred and was followed by rearrangements of the operons in this cluster.     

The bactericidal effects of the respiratory burst and the myeloperoxidase system isolated in neutrophil cytoplasts

Neutrophil polymorphonuclear leucocytes kill bacteria by oxygen-dependent and oxygen-independent mechanisms. Many potentially toxic mechanisms have been described, but the complexity of the phagosomal environment and the synergy between oxidative and non-oxidative systems hamper the investigation of individual bactericidal mechanism in whole cells. Neutrophil cytoplasts are greatly depleted of granule proteins and permit the investigation of the bactericidal effects of the respiratory burst in isolation. In this study they have been used to examine the role of the respiratory burst and myeloperoxidase in oxygen-dependent killing of Staphylococcus aureus. Cytoplasts generated oxygen radicals at comparable rates to human neutrophils and phagocytosed but did not kill S. aureus. The selective reconstitution of the myeloperoxidase-hydrogen peroxide-halide system by coating bacteria with myeloperoxidase conferred on cytoplasts the ability to kill intracellular bacteria. However, extracellular killing by diffusible bactericidal factors was not detected in this system.