The DNA-structures of the chloroplast of Prorocentrum micans (Dinophyceae)

Summary DNA-regions of the chloroplasts of the dinoflagellate Prorocentrum micans were investigated by using serial sections. Prior to post-osmication the glutaraldehyde-fixed cells were treated with trypsin which results in a selective presentation of DNA-structures.For each of the two multilobed chloroplasts of the cell at least 80–100 individual DNA-regions could be calculated. Three-dimensional reconstructions of DNA-regions lead to models of usually flattened irregular discs which can differ markedly in size. It is concluded that the DNA-regions also differ in their DNA-content. Branched DNA-regions are regarded as possible division stages; they suggest a division into parts of different size.In some of the DNA-regions the DNA-fibrils seem to be attached to tube- or tongue-like evaginations of thylakoid membranes. The evaginations differ from normal thylakoids in their limited extension, enlarged loculus and their clearly visible unit membrane. A possible functional resemblance to bacterial mesosomes is discussed.Finally it is concluded that 1. the chloroplast of Prorocentrum is a polyenergidic organelle considering the number of DNA-regions, and that 2. the individual DNA-regions are polyploid to variable degrees with respect to their size.     

The structure of a mesokaryote chromosome

Condensed and dispersed forms of the chromosomes of the dinoflagellate, Prorocentrum micans, deposited on grids by the microcentrifugation technique were studied by electron microscopy. In the normally condensed form, the chromosomes appear as banded rods surrounded by a peripheral cloud of partially dispersed fibers. Single fibers in these and in extensively dispersed preparations appear as smooth threads of uniform diameter (55–65 Å). The chromosome fibers are contrasted by positive-group-specific stains, indicating the presence of cationic moieties associated with the DNA. Occasionally Y-shaped chromosomes are seen; these may be replicating structures. These observations are in general agreement with studies of dinoflagellate chromosomes by other techniques, and provide support for the suggestion that these organisms possess a genome organization whose structure is typical of neither prokaryotes nor eukaryotes, and hence may be intermediate forms.     

ULTRASTRUCTURE OF GLOEODINIUM MONTANUM (DINOPHYCEAE)1

The freshwater dinoflagellate Gloeodinium montanum Klebs (1912) was examined with transmission and scanning electron microscopy. Micrographs of ultrathin sections revealed a series of membrane layers rather than the usual dinoflagellate theca in vegetative cysts and in legates. Swarmers had distinct pellicles but appeared to be devoid of thecal plates and vesicles. The organization of cysts and swarmers appeared remarkably similar. All cell types had typical dinoflagellate nuclei with condensed chromosomes. Chloraplasts had girdle lamellae. One pyrenoid per cell was also present in chloroplasts of vegetative cysts. Starch grains and oil globules were distributed throughout the cytoplasm. Large accumulation bodies and polyvesicular vacuoles were found in aging cysts. Trichocysts and flagellar hairs were absent. Two types of intra-cellular prokaryotic organisms were discovered.     

ULTRASTRUCTURE OF THE RED TIDE DINOFLAGELLATE GYMNODINIUM BREVE. I. GENERAL DESCRIPTION1,2,3

Gymnodimium breve Davis, an unarmored marine dinoflagellate has a cell covering (theca) composed of four membranes. The inner two membranes represent a vesicular layer and in tangential section, the theca appears composed of polygonal areas. Unusual threat ridges are located in the cingular region between the epi- and hypocone. This osmotically sensitive species is extremely vesiculate with dispersed areas of cytoplasm containing typical eukaryotic organelles as well as other organelles found only in dinoflagellates. The non-vesiculated cytoplasm is continuous in serial sections. The chloroplasts can contain either quasi-radial or parallel lamellae typically consisting of three thylakoids each. The pyrenoid is multiple-stalked and lacks a starch cap. The dinophycean pusule is simple and similar to those found in several unarmored marine species. The nucleus is typically dinophycean but the chromosomes appear to lack nonfibrillar material.     

A dinoflagellate with both a mesocaryotic and a eucaryotic nucleus I. Fine structure of the nuclei

Summary Glenodinium foliaceum Stein (Pyrrophyta) has a single mesocaryotic nucleus which contains numerous typically dinoflagellate chromosomes and one or more nucleoli with a structure similar to that of nucleoli in higher organisms. In addition this organism possesses another nucleus-like organelle which is here termed the eucaryotic nucleus. This is a polymorphic body which varies in shape from ovoid to a branched filamentous form. As with the mesocaryotic nucleus it is surrounded by a perforated envelope. The organelle contains granular material and usually several nucleoli which again appear to have the typical form of nucleoli. No other dinoflagellate is known in which two nuclei of differing types are found. The function and significance of the presence of the two nuclei is discussed.     

特殊涡鞭毛虫——尖尾虫染色体与典型涡鞭毛虫染色体的比较研究

我们实验室与上海细胞生物学研究所的有关同志多年来在特殊涡鞭毛虫──尖尾虫（Ｏｘｙｒｒｈｉｓｍａｒｉｎａ）的细胞生物学和生物化学上作了一系列的研究,本文所报道的是这些工作中的一部分。对尖尾虫（Ｏｘｙｒｒｈｉｓｍａｒｉｎａ）的永久浓聚染色体的精细形象以及不同固定方法对其精细形象的影响作了观察,并与人肠道细菌的类核体、典型涡鞭毛虫原甲藻（Ｐｒｏｒｏｃｅｎｔｒｕｍｍｉｃａｎｓ）和鞭毛虫眼虫（Ｅｎｇｌｅｎａｓｐ．）的永久浓聚染色体作了比较。结果表明,细菌的类核体的精细形象受固定方法的影响极大。反之,不同的固定方法对于眼虫染色体的精细形象则看不出有任何显著的影响。至于典型涡鞭毛虫类的染色体,单用ＯｓＯ４或用戊二醛－ＯｓＯ４双固定法固定,都会得到典型涡鞭毛虫类染色体的横带样结构,然而单纯用戊二醛固定,却会得到大不相同的形象。在这方面尖角虫的染色体与一般的涡鞭毛虫类的染色体相距甚远,其染色体的精细形象本身也与眼虫类的染色体较为相似,而与一般涡鞭毛虫类的大不相同。本工作所得到的结果与以前我们在不同方面所得到的结果一致。研究结果全都表明,失足虫与典型涡鞭毛虫有着一系列重大的差异,实际上代表着一个介于一般鞭毛虫类与典型涡鞭毛虫类     

MICROSPECTROPHOTOMETRY AS A METHOD TO IDENTIFY KLEPTOPLASTIDS IN THE NAKED FRESHWATER DINOFLAGELLATE GYMNODINIUM ACIDOTUM1

A relatively small number of freshwater dinoflagellates are involved in symbiotic association with cryptophytes. The chloroplasts of the cryptophytes are retained by the dinoflagellate and give it the characteristic phycobilin pigmentation, either phycoerythrin or phycocyanin. The pigment characterization of the retained chloroplasts can give precise and accurate information about the type of cryptophyte preyed upon by the dinoflagellate. For this purpose, we performed microspectrophotometric evaluation of the pigments of Gymnodinium acidotum Nygaard and three different cryptophytes present in samples collected from a tributary of the river Arno, in Tuscany (Italy). The comparison of the different spectroscopic data allowed us to discriminate effectively among the cryptophytes preyed upon by the dinoflagellate.     

INGESTION AND RETENTION OF CHROOMONAS SPP. (CRYPTOPHYCEAE) BY GYMNODINIUM ACIDOTUM (DINOPHYCEAE)1

Gymnodinium acidotum Nygaard, a blue-green dinoflagellate previously shown to contain cryptophycean chloroplasts and other organelles, was observed from water and soil samples and in culture. The dinoflagellate excysts from soil samples as a mononucleated colorless cell that is positively phototactic. Colorless cells in unialgal culture remain colorless and can only be maintained less than one week whereas pigmented cells cultured unialgally grow for 10 days but then decline rapidly. Colorless cells cultured with Chroomonas spp. regain chloroplasts and have been maintained in mixed cultures for nine months. Fifty-seven percent of the dinoflagellates from mixed cultures are bi-nucleated, and three cells have been observed possibly ingesting cryptophytes. We suggest that cryptophycean chloroplasts are retained and possibly utilized by G. acidotum for at least ten days and then digested.     

Phylogeny of Ultra-Rapidly Evolving Dinoflagellate Chloroplast Genes: A Possible Common Origin for Sporozoan and Dinoflagellate Plastids

Complete chloroplast 23S rRNA and psbA genes from five peridinin-containing dinoflagellates (Heterocapsa pygmaea, Heterocapsa niei, Heterocapsa rotun-data, Amphidinium carterae, and Protoceratium reticulatum) were amplified by PCR and sequenced; partial sequences were obtained from Thoracosphaera heimii and Scrippsiella trochoidea. Comparison with chloroplast 23S rRNA and psbA genes of other organisms shows that dinoflagellate chloroplast genes are the most divergent and rapidly evolving of all. Quartet puzzling, maximum likelihood, maximum parsimony, neighbor joining, and LogDet trees were constructed. Intersite rate variation and invariant sites were allowed for with quartet puzzling and neighbor joining. All psbA and 23S rRNA trees showed peridinin-containing dinoflagellate chloroplasts as monophyletic. In psbA trees they are related to those of chromists and red algae. In 23S rRNA trees, dinoflagellates are always the sisters of Sporozoa (apicomplexans); maximum likelihood analysis of Heterocapsa triquetra 16S rRNA also groups the dinoflagellate and sporozoan sequences, but the other methods were inconsistent. Thus, dinoflagellate chloroplasts may actually be related to sporozoan plastids, but the possibility of reproducible long-branch artifacts cannot be strongly ruled out. The results for all three genes fit the idea that dinoflagellate chloroplasts originated from red algae by a secondary endosymbiosis, possibly the same one as for chromists and Sporozoa. The marked disagreement between 16S rRNA trees using different phylogenetic algorithms indicates that this is a rather poor molecule for elucidating overall chloroplast phylogeny. We discuss possible reasons why both plastid and mitochondrial genomes of alveolates (Dinozoa, Sporozoa and Ciliophora) have ultra-rapid substitution rates and a proneness to unique genomic rearrangements. Received: 27 December 1999 / Accepted: 24 March 2000     

Telomere maintenance in liquid crystalline chromosomes of dinoflagellates

The organisation of dinoflagellate chromosomes is exceptional among eukaryotes. Their genomes are the largest in the Eukarya domain, chromosomes lack histones and may exist in liquid crystalline state. Therefore, the study of the structural and functional properties of dinoflagellate chromosomes is of high interest. In this work, we have analysed the telomeres and telomerase in two Dinoflagellata species, Karenia papilionacea and Crypthecodinium cohnii. Active telomerase, synthesising exclusively Arabidopsis-type telomere sequences, was detected in cell extracts. The terminal position of TTTAGGG repeats was determined by in situ hybridisation and BAL31 digestion methods and provides evidence for the linear characteristic of dinoflagellate chromosomes. The length of telomeric tracts, 25–80 kb, is the largest among unicellular eukaryotic organisms to date. Both the presence of long arrays of perfect telomeric repeats at the ends of dinoflagellate chromosomes and the existence of active telomerase as the primary tool for their high-fidelity maintenance demonstrate the general importance of these structures throughout eukaryotes. We conclude that whilst chromosomes of dinoflagellates are unique in many aspects of their structure and composition, their telomere maintenance follows the most common scenario.     

FURTHER EVIDENCE FOR A MEMBRANE-BOUND ENDOSYMBIONT WITHIN THE DINOFLAGELLATE PERIDINIUM FOLIACEUM1

The fine structure of the binucleate, fucoxanthin-containing dinoflagellate Peridinium foliaceum (Stein) Biechler was re-examined for evidence of an endosymbiout. The eucaryotic nucleus, chloroplasts and associated ribosome-dense cytoplasm were separated by a single invaginating membrane from the rest of the dinoflagellate cell. The triple membrane-enclosed eyespot, mesocaryotic nucleus, trichocysts and accumulation bodies resided in the dinoflagellate cytoplasm. These observations suggest that P. foliaceum contains a membrane-bound endosymbiont, similar to that already described for the closely related species. P. balticum (Levander) Lemmermann.     

A NOVEL ASSOCIATION BETWEEN AN ENDEMIC STICKLEBACK AND A PARASITIC DINOFLAGELLATE. 2. MORPHOLOGY AND LIFE CYCLE1

An unusual dinoflagellate has been discovered in association with an endemic population of stickleback, Gasterosteus (L.), from the Queen Charlotte Islands, Canada. The dinoflagellate spends most of its life cycle as a coccoid vegetative cyst, not as a parasitic trophont. The vegetative cyst is unique in containing a rigid fenestrated matrix, which is penetrated by cytoplasmic process that emanate from a central area containing the dinokaryotic nucleus and associated chloroplasts. Some pores in the matrix are filled by oil droplets or starch granules. Intracellular bacteria are found throughout the cyst, sometimes in association with the nucleus. The cytoplasm contains accumulation bodes, microbodies, polyhedral crystals, chloroplasts and polyvesicular bodes. The encysted dinoflagellate has several potential strategies. It can 1) shed its wall and become amoeboid; 2) undergo sporogenesis and give rise to both regular and resistant spores; 3) divide mitotically, with a gradual reduction in the size of daughter cells down to 20 μm; and 4) apparently form a resting cyst, during which it secretes a thick outer wall composed of five layers. Taxonomically, this unusual dinoflagellate appears to be a new member of the Blastodiniales, although its position will become clearer when details of the motile stage are known.     

GALEIDINIIUM RUGATUM GEN. ET SP. NOV. (DINOPHYCEAE), A NEW COCCOID DINOFLAGELLATE WITH A DIATOM ENDOSYMBIONT1

A new sand‐dwelling dinoflagellate from Palau, Galeidinium rugatum Tamura et Horiguchi gen. et sp. nov., is described. The life cycle of this new alga consists of a dominant nonmotile phase and a brief motile phase. The motile cell transforms itself directly into the nonmotile cell after swimming for a short period, and cell division takes place in the nonmotile phase. The nonmotile cell possesses a dome‐like cell covering, which is wrinkled and equipped with a transverse groove on the surface. The cell has 10–20 chloroplasts and a distinct eyespot. The motile cell is Gymnodinium‐like in shape. The dinoflagellate possesses an endosymbiotic alga to which the chloroplasts belong and which is separated from the host (dinoflagellate) cytoplasm by a unit membrane. The endosymbiont cytoplasm also possesses its own eukaryotic nucleus and mitochondria. The eyespot is surrounded by triple membranes and is located in the host cytoplasm. Photosynthetic pigment analysis, using HPLC, revealed that G. rugatum possesses fucoxanthin as the principal accessory pigment instead of peridinin. The rbcL tree showed that G. rugatum is monophyletic with Durinskia baltica (Levander) Carty et Cox and Kryptoperidinium foliaceum (Stein) Lindemann and that this clade is closely related to the pennate diatom, Cylindrotheca sp. The endosymbiont of G. rugatum is therefore shown to be a diatom. Phylogenetic analysis based on small subunit rDNA sequences demonstrated that G. rugatum, D. baltica, and K. foliaceum, all of which are known to harbor an endosymbiont of diatom origin, are closely related.     

Structural alterations inEuglena gracilis exposed to the herbicide isopropyl-N-phenylcarbamate (IPC)

Summary Ultrastructural abnormalities of various kinds and severity appeared inEuglena gracilis green cells after a 48-hour exposure to 4 × 10^–4M of isoprophyl-N-phenylcarbamate (IPC), a widely used herbicide thought to affect microtubules and/or microtubule organizing centers in susceptible plant and animal species.A high proportion of cells contained nuclei in the G 2 phase of the cycle; in a significant percentage of organisms, however, structural aberrations of the nucleolus and chromosomes were evident. The pellicle outline, chloroplasts, mitochondria, and dictyosomes were also affected. The cytoplasm was rich in dense bodies which sometimes showed granular, fibrillar or tubular materials. Furthermore IPC partially inhibited flagellum regeneration after mechanical amputation.The mechanism by which IPC causes these responses remains unclear. Nevertheless, some indications suggest that the herbicide acts primarily on microtubule organizing centers. However, mitochondria, chloroplasts and nuclear constituents appear as possible additional targets of the compound.The study was supported by a grant from Italian Research Council (CNR), contract No. 80.00420.04.     

Dinophyte chloroplasts and phylogeny - A review

Dinophytes acquired chloroplasts obviously early in evolution and later lost them multiple times. Most families and genera contain both photosynthetic and heterotrophic species. Chloroplasts enveloped by three membranes with thylakoids in stacks of three, containing peridinin as the main pigment, are regarded as the original dinophyte plastids. Pyrenoids are generally present. Stigmata, if present, are usually parts of the chloroplast or are modified original plastids. The form II type RUBISCO found in the dinophytes is unique for eukaryotes, otherwise known only in some anaerobic bacteria. It is disputed whether the original dinophyte chloroplasts are derived from a prokaryotic or an eukaryotic endosymbiosis. Various dinoflagellates contain aberrant chloroplasts. Glenodinium foliaceum and Peridinium balticum have a single complete endosymbiont, originally a pcnnate diatom. Podolampas bipes houses several dictyophycean symbiont cells. The “symbionts” of Lepidodiniurn viride and Gymnodinium chlorophorum are highly reduced prasinophyte cells. The chloroplasts of Gymnodinium mikimotoi have aberrant pigments (fucoxanthin derivatives, no peridinin) and fine structure. The dinoflagellate hosts do not seem to contain any parts of the former endosymbiont except the chloroplasts. Photosynthetic Dinophysis species have cryptophycean-like chloroplasts, whereas symbiotic cyanobacteria are found in other members of the Dinophysiales, e.g., Ornithocercus. Various dinophytes, e.g. Gymnodinium aeruginosum, use kleptochloroplasts from ingested cryptophytes transiently for photosynthesis. Original or secondarily acquired chloroplasts can only be used for phylogenetic considerations in exceptionally cases: it seems unlikely that the Prorocentrales have evolved from the Dinophysiales because all Prorocentrales possess original dinoflagellate chloroplasts, whereas no member of the Dinophysiales has such chloroplasts.     

Dinoflagellate chromosome behaviour during stages of replication.

In most dinoflagellate species, chromosomes are characterized by an almost continuous condensation of the nucleofilaments throughout the cell cycle and the absence of longitudinal differentiation as Q, G, or C banding. Their supercoiled architecture is maintained by divalent cations and structural RNAs. Their chromatin is devoid of histones and nucleosomes and their DNA composition is distinctive: in several species, more than 60% of thymines are replaced by a rare base, hydroxymethyluracil. We report here an immunofluorescence (conventional and confocal laser scanning microscopy, CLSM) and immunogold transmission electron microscopy (TEM) analysis of some stages of the early replication process in Prorocentrum micans dinoflagellate cells, after long pulse incorporation (3, 6 or 9 days) with 50 micrograms/ml bromodeoxyuridine (BrdU) in the presence of 5-fluoro-2'-deoxyuridine (FUdR) and BrdU antibody technique (BAT) detection. The large DNA content (45 pg per nucleus) of P. micans cells is compacted on 100 chromosomes, 10 microns in length. In early S-phase, DNA replication sites are revealed as fluorescent domains organized in clusters, which appear in the periphery of the nucleus unlike other eukaryotes. In late S-phase, the number of labelled clusters increased; helically distributed, they did not appear synchronously in the whole chromosome. Under TEM, spherical domains of equivalent diameter appeared located all along the chromosomes after 6 days BrdU pulse. Replication occurs, but in our experimental conditions, segregation of daughter chromosomes was never observed. The blockade of the cell cycle after BrdU incorporation intervening just before the segregation of daughter chromosomes is discussed.     

PEG-mediated plastid transformation: a new system for transient gene expression assays in chloroplasts

Summary Evidence is presented for the introduction of functional copies of the GUS-reporter gene with plastid regulatory signals into chloroplasts after treatment of Nicotiana plumbaginifolia leaf protoplasts with PEG. GUS-activity is found in cells derived from protoplasts treated with PEG in the presence of plasmids harbouring the GUS-gene under the control of plastid promoter and terminator signals (plastid-specific reporter gene constructions). The activity is maintained after chloroplast isolation and incubation with the protease thermolysin under conditions sufficient to completely remove the much higher transient nuclear/cytoplasmic expression of a GUS-gene carrying the CaMV 35S-promoter. Likewise, GUS-activity derived from a plasmid coding for the nuclear/cytoplasmic expression of the reporter gene with a plastid transit presequence is also maintained after these procedures. These results indicate that PEG-treatment is a suitable protocol by which to introduce DNA into chloroplasts for the study of transient gene expression.     

Association of a protease with polytene chromosomes of Drosophila melanogaster

Incubation of Drosophila salivary glands with radioactive diisopropyl fluorophosphate results in the uniform labeling of polytene chromosomes. Extensive labeling is seen only when chromosome squashes are prepared by a formaldehyde fixation procedure and not by standard acetic acid techniques. The labeling is inhibited in the presence of tosylphenylalanine chloromethyl ketone and phenylmethane sulfonylfluoride but not by tosyllysine chloromethyl ketone, suggesting that a chymotrypsin-like serine protease is associated with the chromosomes. Protease inhibitors show no apparent effect on heat-shock specific puffing.     

Purification of Plastids from the Dinoflagellate Lingulodinium

Peridinin-containing dinoflagellates are a group of generally marine and photosynthetic protists whose plastids display a number of unusual features. In particular, the plastid genome may be reduced to as few as a dozen genes, and it is not clear if all these genes are expressed. To begin to characterize the plastid proteins, we attempted to purify chloroplasts from the dinoflagellate Lingulodinium polyedrum. We tested several different protocols and found that the organelles were inherently fragile and difficult to isolate intact. In particular, standard purification protocols as described for higher plants produced only broken plastids, as judged by complete loss of the stromal protein RuBisCO. We found that small amounts of RuBisCO could be retained in the plastids if the cells were treated with cellulase prior to lysis. Finally, we report that almost all RuBisCO was retained in plastids prepared from cells subjected to a heat shock treatment, although cellular proteins were denatured by the treatment.     

Carbon dioxide fixation by immobilized chloroplasts

Chloroplasts of chinese mustard (Brassica campestris L.) were immobilized in polyacrylamide gel. A 8% polymer concentration was suitable for the immobilization. The activity of the carbon dioxide fixation of immobilized chloroplasts was 65% of that of free chloroplasts. The optimum conditions for the carbon dioxide fixation of immobilized chloroplasts were similar to that of native chloroplasts. However, immobilized chloroplasts were more stable under alkaline conditions and high temperatures than native chloroplasts. Light penetration of the gel was not a limiting parameter of the carbon dioxide fixation. The lifetime of immobilized chloroplasts was three times longer than that of free chloroplasts. 3-Phosphoglyceraldehyde and other compounds were produced continuously by immobilized chloroplasts.