Evidence for an outcrossing reproductive strategy in the hermaphroditic heterobranch gastropod Valvata utahensis (valvatidae), with notes on the genetic differentiation of V. utahensis and V. humeralis

The hermaphroditic aquatic heterobranch Valvata utahensis isa federally endangered snail endemic to the Snake River corridorin southern Idaho, USA. Although an appreciable understandingof molluscan taxonomic diversity has been established withinthis ecosystem, little is currently known about the ecologyand life history of many individual species (V. utahensis included).In this study, we used a combined analysis of mitochondrialand nuclear genetic variation within V. utahensis to infer thepredominant mode of reproduction (selfing vs outcrossing) withinnatural populations of this species. Results of this analysisindicated that outcrossing is likely a common reproductive strategy.We discuss our results in the context of conservation and managementefforts for this endangered species. Furthermore, in the courseof performing our investigations, we frequently collected specimensthat were tentatively identified as V. humeralis. Given thatlittle genetic work has previously been performed within thegenus Valvata, we compared genetic data from V. utahensis withdata from V. humeralis to determine whether molecular data supportedmorphological evidence that these two taxa are distinct evolutionaryentities. Results of our analyses clearly revealed strong patternsof genetic differentiation between these two taxa and confirmedthe presence of two sympatric Valvata species within the SnakeRiver system. (Received 25 January 2006; accepted 20 April 2006)     

Origin and diversification of the soldier meadow springsnails (Hydrobiidae: Pyrgulopsis), a species flock in the northwestern Great Basin, United States

The large, western North American hydrobiid gastropod genusPyrgulopsis (commonly known as springsnails) includes a seriesof locally endemic faunas that are thought to be species flocks.Although these assemblages are of interest from the evolutionary,biogeographic and conservation perspectives, their monophylyand phylogenetic relationships have yet to be rigorously evaluated.Here we present a molecular phylogeny (based on mitochondrialsequence data) of a putative flock of four thermal spring-dwellingspringsnails that is distributed in many sites in Soldier Meadowand a single locality in Bog Hot Valley (northwestern Nevada).Our analyses support monophyly of this assemblage (‘SoldierMeadow clade’) and a close relationship with other regionalspecies and suggest that the invasion of thermal habitats bythese springsnails occurred independently of other such radiationswithin the genus. The divergence of the Soldier Meadow claderelative to its sister group is substantial (6.79–10.36%for COI, 10.35–15.88% for NDI), suggesting a split inthe early Pliocene, based on the application of a COI clockfor Pyrgulopsis. The splits within the Soldier Meadow cladeinto three main subunits also appear to be old events, basedon their 5.78–8.54% COI divergence relative to each other.These findings are consistent with a long history of springsnailevolution in Soldier Meadow, which is intriguing given thatthis basin was flooded by Lake Lahontan during periods of theearly and middle Pleistocene. We suggest that progenitors ofthe contemporary fauna survived in high elevation springs thatmay have been present in the basin during these pluvial periodsand subsequently colonized contemporary habitats following thetermination of the extreme Lake Lahontan highstands. We speculatethat the broadly disjunct population (of P. militaris) in BogHot Valley, which is consistently nested within the SoldierMeadow clade in our phylogenetic analyses, is either a vicariantrelict of a spring zone that may have once extended betweenthese two areas; or was founded by a past ‘jump’dispersal event from Soldier Meadow. Phylogeographic structureof springsnail populations in Soldier Meadow bears the strongstamp of geologically recent, allopatric diversification, perhapsreflecting the short time that basin floor habitats have beenoccupied. We describe a new species (P. varneri) for a seriesof recently discovered populations that are monophyletic, substantiallydivergent and morphologically distinctive. Additional studieswill be necessary to confidently assess the taxonomic statusof morphologically distinctive P. limaria and P. umbilicata,which are shown herein to be little divergent genetically; anda recently discovered minute springsnail that is morphologicallydivergent yet closely similar genetically to P. notidicola. (Received 20 December 2006; accepted 22 February 2007)     

Fine scale population genetic structure of pumas in the Intermountain West

In this study, I examined the population genetic structure of subpopulations of pumas (Puma concolor) in Idaho and surrounding states. Patterns of genetic diversity, population structure, levels of inbreeding, and the relationship between genetic differentiation and dispersal distance within and between 15 subpopulations of pumas were compared. Spatial analyses revealed that the Snake River plain was an important barrier to movement between northern and southern regions of Idaho. In addition, subpopulations south of the Snake River plain exhibited lower levels of genetic diversity, higher levels of inbreeding, and a stronger pattern of isolation by distance relative to subpopulations north of the Snake River plain. Lower levels of diversity and restricted gene flow are likely the result of historically lower population sizes in conjunction with more recent changes in habitat use and available dispersal corridors for movement. The subdivision of puma populations north and south of the Snake River plain, along with the patterns of genetic diversity within regions, indicate that landscape features are affecting the population genetic structure of pumas in Idaho. These results indicate that information about the effects of landscape features on the distribution of genetic diversity should be considered when designing plans for the management and conservation of pumas.     

Phylogeography of the Wabash pigtoe, Fusconaia flava (Rafinesque, 1820) (Bivalvia: Unionidae)

Reconstructing the phylogeographic patterns of widely distributedand common freshwater mussel species (Bivalvia: Unionidae) mayprovide insight into unionid evolution and speciation. The Wabashpigtoe, Fusconaia flava, is currently recognized as a single,polytypic species that is widely distributed and common throughoutthe Mississippi River drainage and parts of the Canadian Interior,Great Lakes and Gulf Coast drainages. Sequence analysis of themitochondrial COI gene revealed two divergent (3.43%) clades.Clade A consisted of specimens located throughout the upperand lower Mississippi River drainage and in the Red River (Canada)and Lake Erie drainages and all F. cerina specimens. All haplotypeswithin clade A differed by three (0.55%) or fewer nucleotidesubstitutions from the most widely distributed and abundanthaplotype, F1. Clade B, consisting of specimens located in thefar western portion of the species' range, may comprise an undescribedspecies. There was no evidence of genetic differentiation amongF. flava inhabiting headwater and intermediate-sized river localitiesof the Muskingum River system and large river localities ofthe nearby Ohio River. The divergence among F. flava haplotypescomprising clade A (0.18–1.10%) was similar to the divergencebetween the F. cerina haplotypes and the F. flava haplotypescomprising clade A (0–1.10%). This study illustrates theimportance of accessing genetic diversity across the distributionof a polytypic species. Additional analyses based on a combinationof morphology and genetics are needed to determine the taxonomicstatus of clade B and to strengthen our understanding of therelationship between F. flava and F. cerina. (Received 28 May 2007; accepted 13 August 2007)     

Myriophyllum quitense (Haloragaceae) in the United States

A systematic study of more than 15,000Myriophyllum specimens from 189 North American herbaria yielded 63M. quitense specimens. Late 19th century collections were made from Henry's Fork of the Snake River in Jefferson County, Idaho, in 1872, from Santa Cruz Creek, Tucson, Pima County, Arizona, in 1881, from Yellowstone Lake in 1885, and from Crook County, Oregon, in 1894. Twentieth century collections have been made from Yellowstone National Park, at several sites along the Snake River in Idaho, in Summit County, Utah, in Lassen and Shasta counties of northern California, at numerous sites along the Deschutes River, and in Benton County, Oregon, and at three sites in Washington. We contend that the species was introduced into North America by migratory waterfowl more than 100 years ago. Only in the Yellowstone Lake and numerous Deschutes River habitats in which populations now exist are environmental conditions conducive to full morphological development of the species in North America.     

Discovery Of Genetically Distinct Sympatric Lineages in the Freshwater Mussel Cyprogenia Aberti (Bivalvia: Unionidae)

The western fanshell, Cyprogenia aberti, occurs in the CentralHighlands region of North America and is the only congener ofthe federally endangered fanshell, C. stegaria. Due to a reductionin range size and local extirpations, extant populations ofC. aberti have become increasingly isolated. Consequently, C.aberti has been the focus of numerous conservation efforts,yet no work has examined the degree of genetic variation amongthe species' disjunct populations. Phylogenetic analyses ofnucleotide sequences from two mitochondrial gene portions (CO1and ND1) revealed results important to the conservation managementof C. aberti. First, phylogenetic analyses do not support amonophyletic C. aberti. Second, C. aberti is comprised of asmany as five independent lineages, one of which includes thefederally endangered C. stegaria. Third, analysis recoveredtwo genetically distinct sympatric lineages of C. aberti inthe Ouachita River Drainage. These phylogenetic results suggestthat the five distinct evolutionary lineages of C. aberti shouldbe managed as separate conservation units. This study illustrateswhy it is critical to evaluate genetic variability in endangeredand threatened ‘species’ prior to implementing arecovery program. These data also reveal the value of assessingbiological diversity of nonimperiled taxa before populationsare extirpated and valuable genetic data necessary for reconstructionof evolutionary relationships is lost. (Received 24 October 2005; accepted 8 June 2006)     

A molecular phylogeny of aquatic gastropods provides a new perspective on biogeographic history of the Snake River Region

Mitochondrial DNA sequences of aquatic gastropods of the subgenus Pyrgulopsis (Natricola) were analyzed to test a commonly accepted hypothesis concerning the early history of the Snake River in the northwestern US. Distributions of Natricola and other regional biota were previously used to infer that the Snake River flowed to the Pacific through southeastern Oregon and northern California during the Neogene prior to its capture by the Columbia River in the late Pliocene (2 Ma). A molecular phylogeny based on partial sequences of COI and NDI (1149 bp) indicates that the Natricola clade is restricted to the modern Snake-Columbia River Basin and the Oregon Lakes region whereas northern California populations previously assigned to this subgenus belong to other lineages. The Natricola clade is not deeply subdivided into Oregon Lakes and Snake River Basin units consistent with late Pliocene fragmentation of the hypothesized paleodrainage, but instead is shallowly structured and contains multiple transitions among these two geographic areas. The strongly supported sister relationship between Natricola and a species from northwest Nevada (P. imperialis) is consistent with a recent proposal that the ancestral Snake River did not flow through southeast Oregon but instead flowed south to the Humboldt River. Within the context of this hypothesis, the multiple transitions between the Snake River Basin and the Oregon Lakes region that occurred within Natricola may be attributed to a late Pleistocene connection between these areas that was unrelated to the early course of the Snake River.     

Discovery of introduced and cryptogenic cochliopid gastropods in the San Francisco Estuary, California

We report the first discovery in the San Francisco Estuary (‘Estuary’)of two cochliopid gastropods, Littoridinops monroensis and Tryoniaporrecta. These identifications were based on morphologicalcriteria and supported by analysis of mitochondrial DNA (cytochromec oxidase subunit I, COI) sequence data. We also report thefirst discovery of males in parthenogenetic T. porrecta. Thenew records represent large range extensions for both of theseNorth American species, which were previously recorded frompredominantly brackish habitats along the western Atlantic-GulfCoast (L. monroensis) and thermal springs in the Great Basinand lower Colorado River region (T. porrecta). The COI haplotypeobserved in Estuary specimens of L. monroensis differed fromthose detected in two western Atlantic populations by only 1–3 bp,suggesting recent divergence which is not consistent with theseparation of these two areas by imposing terrestrial barrierssince at least the Pliocene. We suggest that L. monroensis wasrecently introduced to the Estuary by transoceanic shipping,adding to the large exotic biota that has invaded this highlydisturbed ecosystem. The COI haplotype observed in Estuary specimensof T. porrecta is closely similar to haplotypes detected inNevada and Utah populations and highly divergent relative tothe single haplotype observed in other California populations.The implications of these findings for the status of T. porrectain the Estuary are unclear, because the native range of thisparthenogen has not been established and its scattered distributionin the West may be attributable to natural dispersal acrossland (on birds) and/or anthropogenic spread. Although we suggesttreating T. porrecta as cryptogenic in the Estuary, a nativestatus may be suggested by independent (subfossil) evidencethat this snail was locally present prior to establishment ofthe area as a major centre of human population and commercein the 1850s. (Received 13 April 2007; accepted 25 June 2007)     

PATTERNS OF GENETIC DIFFERENTIATION AND CONSERVATION OF THE SLABSIDE PEARLYMUSSEL, LEXINGTONIA DOLABELLOIDES (LEA, 1840) IN THE TENNESSEE RIVER DRAINAGE

The restoration and recovery of imperiled mussel species willrequire the re-establishment of populations into historicallyoccupied habitats. The possible existence of genetic differentiationamong populations should be considered before inter-basin transfersare made. Eighty individuals of the federal candidate speciesLexingtonia dolabelloides were sampled from populations in theNorth Fork Holston, Middle Fork Holston, Clinch, Paint Rockand Duck rivers of the Tennessee River basin in the southeasternUnited States. We sequenced 603 base-pairs of a mitochondrialDNA gene (ND-1) and 512 base-pairs of a nuclear DNA gene (ITS-1).Analyses of molecular variation (AMOVA) values for both genesindicated that the majority of variation in L. dolabelloidesresided within populations (82.9–88.3%), with 11.7–17.1%of variation among populations. Haplotype frequencies differedsignificantly among populations for both genes sequenced. Clusteringof haplotypes in minimum-spanning networks did not conform stringentlyto population boundaries, reflecting high within-populationand low between-population variability. Maximum parsimony analysisdid not identify any population as a monophyletic lineage. AMantel test showed no significant correlation between geographicalstream distance and genetic distance, thus not supporting apattern of isolation-by-distance. Overall, results providedsupport to manage fragmented populations of L. dolabelloidesin the Tennessee River drainage as two management units (MUs),but did not provide evidence for the existence of ESUs followingpublished molecular criteria. (Received 26 October 2004; accepted 29 April 2005)     

GENETIC VARIATION IN SYMPATRIC AND ALLOPATRIC POPULATIONS OF HYBRIDIZING FRESHWATER SNAIL SPECIES(VIVIPARUS ATER AND V. CONTECTUS)

To estimate the geographical extent of introgression, we studiedthe genetic structure of sympatric and allopatric populationsof hybridizing freshwater snail species Viviparus ater and V.contectus in central Europe. Six allozyme loci which were variablein Lake Garda, Italy in a previous study (five nearly diagnosticloci between the two species and one highly polymorphic locusin V. contectus) were analyzed from ten sympatric locationsand four allopatric populations each for the two species. Presumablyintrogressed genes (low allele frequencies) were found fromat least one locus in seven out of the ten sympatric sites.These seven sites covered most of northern Italy. The data indicatethat introgression has occurred from Viviparus contectus toV. ater and vice versa. Therefore, there is a possibility ofwidespread introgression or mosaic zones in nature. However,we cannot rule out that the observed patterns are due to theshared ancestry. V. ater possessed low genetic variation (thejackknifed mean of Wright's F_ST±S.E. over four loci was0.041±0.004). On the other hand, V. contectus showedhigh genetic differentiation (the jackknifed mean of F_ST±S.E. over six loci was 0.546±0.166). Although introgressionmay have caused evolutionary changes in V. ater and V. contectus,it was not strong enough to level out the genetic differencesbetween the two species, which may have originated from isolationamong populations in V. contectus and a past bottleneck eventin V. ater. (Received 21 June 1996; accepted 31 January 1997)     

Evolution after the flood: phylogeography of the desert fish Utah Chub

The Bonneville Basin and upper Snake River drainage of western North America underwent extensive hydrological changes during the late Pleistocene, potentially influencing the geographic distribution and evolutionary trajectories of aquatic species that occupied this region. To test this hypothesis, I reconstructed the phylogeographic history of the desert fish Utah chub (Gila atraria) by examining 16 populations that span the natural distribution of this species across the Bonneville Basin and upper Snake River. I compared mitochondrial control region sequences (934 bp) among 77 individuals revealing 24 unique haplotypes. Geographic and phylogenetic relationships among haplotypes were explored using parsimony, maximum likelihood, nested clade analysis, and analysis of molecular variance. I found that G. atraria is composed of two distinct clades that represent an early Pleistocene split between the upper Snake River and Bonneville Basin. Within each of these clades, geographic structuring was highly concordant with the hydrological history of late Pleistocene Lake Bonneville and the upper Snake River, suggesting that glacial-induced shifts in climate and unpredictable geological events have played a major role in shaping genetic subdivision among populations. To examine the effects of vicariant events on phenotypic divergence among Utah chub populations, I mapped chub life histories to the control region haplotype network. I found a nonrandom association between haplotypes and life-history phenotypes. These results suggest that historical events responsible for population fragmentation may have also contributed to phenotypic shifts in life histories, both indirectly by limiting gene flow among populations and directly by altering the selective environments where populations persisted.     

Rangewide molecular structuring in the Utah sucker (Catostomus ardens)

The Utah sucker (Catostomus ardens) is endemic to the Bonneville Basin and the upper Snake River drainage in western North America, and is thought to hybridize with the federally endangered June sucker (Chasmistes liorus mictus) in Utah Lake (Bonneville Basin). Here we describe the discovery of a major subdivision in Utah suckers (4.5% mitochondrial sequence divergence) between the ancient Snake River drainage and the Bonneville Basin. This boundary has not previously been recognized in Utah suckers based on morphologic variation, but has been recently described in two endemic cyprinids in the region. Populations in valleys east of the Wasatch Mountains in Utah clustered with the Snake River populations, suggesting that these valleys may have had an ancient hydrologic connection to the Snake River. We also found evidence of population isolation within the Bonneville Basin, corresponding to two Pleistocene sub-basins of the ancient Lake Bonneville. In contrast, we found no molecular evidence for deep divergence between Utah suckers and June suckers in Utah Lake or for a history of hybridization between divergent lineages in that population, although we recognize that demographic events may have obscured this signal. These findings suggest that the morphological differences between Utah and June suckers in Utah Lake may be the result of strong, and relatively recent, ecological selection. In summary, morphological and molecular characters seem to vary along different axes in different portions of the range of this taxon, providing an interesting system for studying the contributions of neutral and adaptive variation to species diversity.     

Pliocene and early Pleistocene environments and climates of the western Snake River Plain, Idaho

Sedimentological, palynological, and magnetic susceptibility data provide paleoenvironmental and paleoclimatic information from a 989 ft (301 m) core of sediments from the upper Glenns Ferry and Bruneau Formations from near the town of Bruneau in Owyhee County, Idaho. Chronology is based on stratigraphic position, paleomagnetism, and biostratigraphic data, which collectively suggest a late Gauss Normal-Polarity Chron age for the Glenns Ferry sediments and a middle Matuyama Reversed-Polarity Chron age for the Bruneau sediments. A deep lake was present on the western Snake River Plain during the portions of the time represented by the Glenns Ferry Formation, and the mudstones of the lower half of the core were apparently deposited in this lake. The terminal regression of the Glenns Ferry lake may be represented in the Bruneau core by sandy mudstones and sands that overlie the deep-water mudstones. A cobble layer present in the core between the Glenns Ferry lake beds and those of the overlying Bruneau Formation may indicate through-flow by the ancestral Snake River.Palynological data from the Glenns Ferry sediments in the Bruneau core reveal a pollen flora similar to the modern regional pollen flora, with very rare occurrences of now-extirpated taxa common earlier in the Tertiary. Palynological data from the Pliocene portion of this core indicate conditions more moist than today, with cooler summers and perhaps warmer winters. Quasi-periodic fluctuations in coniferous pollen (primarily Pinus) versus arid steppe taxa (primarily Chenopodiaceae/Amar-anthus) indicate significant variations in moisture through the lower two-thirds of the Glenns Ferry portion of the core. Shorter wave-length fluctuations in magnetic susceptibility and (inversely) Artemisia may reflect variations in temperature or other unidentified climatic variables. The pollen spectra from the Bruneau Formation sediments in the Bruneau core are dominated by Artemisia and resemble those of the Wisconsinan glacial period on the Snake River Plain, and hence indicate cold and dry conditions during some portion of the early Pleistocene.The deep-water Glenns Ferry lacustrine episode appears to date between approximately 3.5 to 3.3 and 2.5 Ma, and thus occurred during the middle Pliocene period of warmer-than-modern global temperatures. Similar sustained wetter-than-present conditions occurred in the same age range at sites across the western U.S.A. from southern California and Arizona to northern California and Idaho. This moist period was apparently followed by an interval of regional arid conditions that persisted for several hundred thousand years.     

PHYLOGENETIC RELATIONSHIPS OF IBERUS GUALTIERANUS AND I. ALONENSIS (GASTROPODA: HELICIDAE) BASED ON PARTIAL MITOCHONDRIAL 16S rRNA AND COI GENE SEQUENCES

There is controversy about the phylogenetic relationships betweenIberus gualtieranus and I. alonensis. Some authors considerthem as valid species or subspecies while others believe thatthe flattened shell of I. gualtieranus is an ecotypic adaptationto dry karstic environments. Two fragments of the mitochondrialDNA (partial COI and 16S rRNA) were sequenced and used in maximumparsimony, maximum likelihood and neighbour-joining analyses.Iberus alonensis show two distinct lineages, one from Almeríaand the other one from Granada and Jaén-Córdobaregions. Iberus gualtieranus populations are recovered as aterminal node within the I. alonensis group from Almería.The I. gualtieranus clade shows a polytomy and there are nodifferences between the populations of the three isolated localitieswhere I. gualtieranus is currently distributed. This indicatesthat the geographical isolation of these populations has notresulted in genetic diversification. The results indicate thatthe population of I. gualtieranus from Sierra de Gádorin Almería is the only autochthonous one, while the othertwo populations originated by historical introductions. On thebasis of the differences in shell morphology, together withthe presence of a hybrid zone connecting both taxa in nature,and the possibility of obtaining fertile hybrids under laboratoryconditions, we conclude that these two taxa represent two subspecies:Iberus gualtieranus gualtieranus and I. gualtieranus alonensis. (Received 27 September 2004; accepted 10 March 2005)     

A Review of the Biology and Ecology of the Quagga Mussel (Dreissena bugensis), a Second Species of Freshwater Dreissenid Introduced to North America

SYNOPSIS. North America's Great Lakes have recently been invadedby two genetically and morphologically distinct species of Dreissena.The zebra mussel (Dreissena polymorpha) became established inLake St. Clair of the Laurentian Great Lakes in 1986 and spreadthroughout eastern North America. The second dreissenid, termedthe quagga mussel, has been identified as Dreissena bugensisAndrusov, 1897. The quagga occurs in the Dnieper River drainageof Ukraine and now in the lower Great Lakes of North America.In the Dnieper River, populations of D. polymorpha have beenlargely replaced by D. bugensis; anecdotal evidence indicatesthat similar trends may be occurring in the lower LaurentianGreat Lakes. Dreissena bugensis occurs as deep as 130 m in theGreat Lakes, but in Ukraine is known from only 0–28 m.Dreissena bugensis is more abundant than D. polymorpha in deeperwaters in Dneiper River reservoirs. The conclusion that NorthAmerican quagga mussels have a lower thermal maximum than zebramussels is not supported by observations made of populationsin Ukraine. In the Dnieper River drainage, quagga mussels areless tolerant of salinity than zebra mussels, yet both dreissenidshave acclimated to salinities higher than North American populations;eventual colonization into estuarine and coastal areas of NorthAmerica cannot be ignored.     

Phylogeography of an endangered Western North American springsnail

We provide the first genetic analysis of the Bruneau Hot Springsnail (Pyrgulopsis bruneauensis), a federally listed (endangered) hydrobiid gastropod that is distributed in spring-fed habitats along a short reach of the Bruneau River in southwestern Idaho and threatened with extinction by groundwater withdrawal. Partial sequences of mitochondrial cytochrome c oxidase subunit I (COI) and NADH dehydrogenase subunit I (NDI) were obtained from 51 specimens from six sites spanning the narrow geographic range of P. bruneauensis. A Bayesian analysis of the combined dataset resolved this species as a well supported clade which differed from other regional congeners by 4.66–10.62% sequence divergence (COI). The 11 observed COI haplotypes in P. bruneauensis formed two divergent (1.42 ± 0.7%) subgroups that co-occurred at five of the six collecting sites. COI haplotype diversity was substantial (ranging up to 0.9111) in all but one sample, while nucleotide diversity was low (<0.01). AMOVA detected small but significant variation among sites, although only one sample was significantly differentiated by pairwise comparisons. Haplotype composition varied widely among the collecting localities and no obvious geographic pattern was detected. These findings suggest that translocation of snails, which was considered as a possible measure in the P. bruneauensis recovery plan, should be preceded by assays to ensure selection of appropriately genetically diverse source populations.     

淮河水系日本沼虾群体遗传结构和系统演化的线粒体COI序列分析

测定了淮河水系17个日本沼虾(Macrobrachium nipponense)野生群体共248个个体的线粒体细胞色素氧化酶亚基I(COI)部分序列,获得623 bp核苷酸片段,包括48个变异位点,定义了31个单倍型,共享单倍型有12个,整体单倍型多样性和平均核苷酸多样性均处于中间水平。AMOVA分析表明,17个群体间的遗传分化系数Fst=0.041 3(P0.05),群体间遗传分化较小。Kimura 2-paramter遗传距离在五河与焦岗湖、花家湖及瓦埠湖群体间最大,为0.014,在高邮和邵伯湖群体之间最小,为0.003。MP系统树与单倍型进化网络关系图具有较高的一致性,31个单倍型被分为3个进化枝,其中一个进化枝主要以下游群体为主,另外2个进化枝主要以中游群体为主。群体中性检验、错配分析表明,淮河日本沼虾近期曾经历过种群扩张。     

Molecular phylogeny of Nearctic species of Rhynchelmis (Annelida)

Zhou, H., Fend, S. V., Gustafson, D. L., De Wit, P. & Erséus, C. (2010). Molecular phylogeny of Nearctic species of Rhynchelmis (Annelida). —Zoologica Scripta, 39, 378–393. The Nearctic species of Rhynchelmis (Clitellata, Lumbriculidae) are known primarily from cool‐water habitats in western North America. Their taxonomy has so far been based on limited collections from isolated localities, using intuitive assessment of morphological characters. This approach has proved unsatisfactory when additional populations of closely related species were sampled and scrutinized for incorporation in the present classification. Therefore, in this study, mitochondrial (cytochrome c oxidase subunit I and 16S rDNA) and nuclear internal transcriber spacer (ITS rDNA) genes were analysed as phylogenetic markers of Nearctic Rhynchelmis species. A combined approach with all the three gene regions provided a better resolution than any of the individual genes by itself. The genes demonstrated monophyly of all major groupings proposed on the morphological basis. Within the Rhynchelmis yakimorum complex, however, the genetic data and distribution suggested that two clades initially referred to as a ‘R. yakimorum variant 1’, one from the lower Snake River drainage in Idaho and one from southern coastal Oregon, might represent two separate species. On the other hand, the sympatric distribution and low genetic distance between Rhynchelmis gustafsoni and a form tentatively identified as ‘R. cf. yakimorum’ (both collected in eastern Idaho) indicated conspecific status. This study also showed that the cytochrome c oxidase subunit I (COI) gene, which may be informative of recent and on‐going speciation and useful for species discrimination (as a DNA barcode), is less suitable as a single molecular marker for phylogenetic inference. Regardless of whether one deals with very closely related species (such as those of the yakimorum complex), with taxa with a wide and disjunct distribution (such as Rhynchelmis rostrata), or with more distantly related species, COI data should be supplemented by other genetic markers as well as morphological and biogeographical information.     

Phylogenetic relationships of assimineid gastropods of the Death Valley–lower Colorado River region: relicts of a late Neogene marine incursion?

Aim A small fauna of amphibious snails (genus Assiminea Fleming, 1828) living in association with highly mineralized springs in the Death Valley–lower Colorado River region (DVLCR) is thought to be a relict of the Bouse Embayment, a putative late Miocene–early Pliocene transgression of the ancestral Gulf of California along the lower Colorado River valley. We analysed the phylogenetic relationships of this fauna using mtDNA sequence data (1171 bp) to determine whether, as would be consistent with this hypothesis, it forms a substantially divergent unit sister to marine coastal congeners. Location South‐western Great Basin and lower Colorado River region, USA. Methods Two genes [mitochondrial cytochrome c oxidase subunit I (COI) and the mitochondrial 16S ribosomal RNA gene] were sequenced for 10 populations of DVLCR assimineas (Assiminea infima Berry, 1947 ; Assiminea sp.). We also sequenced an undescribed population from a spring in the Colorado River delta; western North American Pacific Coastal Assiminea californica (Tryon, 1865); the three other congeners that live on the continent; and three Old World assimineids (outgroups). Phylogenies based on the combined data set were obtained using Bayesian methods, and divergence times were estimated using a COI molecular clock for related gastropods. Results Composite haplotypes of the DVLCR assimineas, together with that observed in the Colorado River delta population, formed a weakly supported clade that was sister to a clade composed of populations of North American Pacific and Atlantic coastal species. The genetic distance between members of these two clades was 3.46 ± 0.47% for COI and 1.69 ± 0.38% for 16S. The former clade was composed of five subunits that differed from each other by 1.29–2.84% (COI) and 0.52–1.98% (16S) sequence divergence. Main conclusions Application of the COI clock suggests that progenitors of the DVLCR fauna diverged from coastal ancestors 2.13–1.89 Ma (late Pliocene), several million years after the Bouse Embayment would have been terminated by the establishment of the lower (freshwater) Colorado River. This finding, together with shallow genetic structuring of several DVLCR lineages that are widely distributed across the topographically complex regional landscape, suggests that the Assiminea fauna of this inland area was more likely to have been founded by coastal colonists transported on water birds than through a direct connection with the sea.     

Overwintering of Microcystis aeruginosa Kutz. in a shallow lake

The standing crop and photosynthetic activity of Microcystisaeruginosa Kütz. in both the plankton and sediment wereinvestigated from November 1979 to May 1982 in Lake Kasumigaura,Japan. The number of planktonic colonies of this species decreasedfrom early autumn to early spring, but increased in the sedimentduring late summer and autumn. The overwintering colonies inthe sediment were –100–1000 times greater per unitarea than those in lake water. No photoinhibition of photosynthesiscould be observed in overwintering Microcystis. The values ofthe initial slopes of photosynthesis-light (P-I) curves weresimilar to those of the summer population, although the maximumphotosynthetic rate (P_max) measured at 20°C was lower thanthat of the summer planktonic population. In winter the valuesof initial slope of the P-I curve, and the ratio of phycobilinto chlorophyll a sorted from sediment were higher than in coloniesfrom the plankton.