Trade-offs between flowering time,plant height,and seed size within and across 11 communities of a QingHai-Tibetan flora

Flowering timing is of fundamental biological importance for its tight association with pre-flower growth states and subsequent reproduction success. Here, we selected plant height and seed size to represent plant growth and reproduction states, respectively, and analyzed their associations with flowering time in 11 communities together representing a QingHai-Tibetan flora. Trait associations were examined using Pearson correlation analyses (TIPs) and phylogenetically independent contrasts (PICs) within individual communities and meta-analyses across all communities. The results of TIPs-based and PICs-based analyses were generally congruent, although fewer contrasts were significant with PICs, probably because of low statistical power. Overall, flowering time was negatively correlated with seed size and plant height (i.e., plants with larger seeds and stature started flowering earlier) in various woody communities, but correlations were neutral or positive in herbaceous communities. The seed size–flowering time relationship was negative for woody and herbaceous perennials but not for annual herbs in most communities. The relationship between plant height and flowering time was negative for woody but positive for herbaceous plants. Moreover, the lack of difference in time–size relationships between anemophilous and entomophilous plants suggests that pollination type may only be a secondary force in controlling flowering phenology. Our studies demonstrate that environmental conditions, community structure, and plant life history strategies may affect community flowering time singly or in combination.     

Flt-2L, a locus in barley controlling flowering time, spike density, and plant height

Flowering time represents an important adaptive trait for temperate cereal crops and may also impact on frost damage in cereal reproductive tissues by enabling escape or by influencing accumulation of genuine tolerance. The Flowering time-2L (Flt-2L) quantitative trait locus (QTL) on the distal end of barley chromosome arm 2HL overlaps with QTL for rachis internode length and reproductive frost damage. Flt-2L was also found to be associated with plant height. By combining marker analysis with phenotyping in progeny families of selected Amagi Nijo × WI2585 F₆ recombinants, we were able to map quantitative flowering time, rachis internode length, and plant height effects on 2HL as discrete Mendelian traits. The three developmental characters showed codominant modes of expression and perfectly cosegregated with one another in a 1.3-cM marker interval, indicating control by the same gene or closely linked genes. Twelve genes were identified in the related intervals in the rice and Brachypodium distachyon genomes. The HvAP2 gene cosegregated with Flt-2L and represents a plausible candidate for Flt-2L, since it is highly similar to the wheat domestication gene Q which has similar developmental effects. These data will contribute to isolation of the Flt-2L gene(s) and help establish the basis of the frost damage QTL. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Linking intra‐specific trait variation and plant function: seed size mediates performance tradeoffs within species

Substantial intra‐specific trait variation exists within plant communities, and in theory this variation could influence community dynamics. Although recent research has focused on intra‐specific variation in traits themselves, it is the influence of this variation on plant performance that makes intra‐specific trait variation relevant to ecological dynamics within or among species. Understanding the links between trait and performance variation, and the role of traits in mediating relationships among multiple components of performance, is critical for assessing the importance of intra‐specific trait variation for community dynamics. Seed size is thought to affect aspects of plant performance including fecundity, seedling growth, dispersal and tolerance of natural enemies. For two tropical tree species, we assessed how seed size was related to performance variation within each species and determined whether intra‐specific trait variation mediates intra‐specific performance tradeoffs. We used field seed rain collection to characterize size‐dependent outcomes of dispersal, sowed seeds of known size in soil collected near or far from conspecifics to characterize susceptibility to soil pathogens, and monitored growth of seedlings from seeds of known size. We found that intra‐specific seed size variation caused intra‐specific performance variation. The degree of trait‐based performance variation was consistently smaller than the degree of trait variation, and seed size influenced different components of performance for each species. One species exhibited a tradeoff in which small seeds had a fecundity advantage (more seedlings per unit reproductive mass) but produced smaller seedlings, whereas the other species exhibited a tradeoff in which small seeds dispersed to areas of low conspecific density but were less tolerant of density‐responsive natural enemies. Our results indicate that a single trait can influence multiple components of performance and can mediate different tradeoffs in co‐occurring species. Complex and heterogeneous effects of a single trait in multidimensional niche space may favour inter‐specific niche differentiation and coexistence.     

A comparative study of seed number, seed size, seedling size and recruitment in grassland plants

In this study we analyse relationships between seed number, seed size, seedling size and recruitment success in grassland plants. The often hypothesised trade-off between seed size and seed number was supported by a cross-species analysis and by an analysis of 35 phylogenetically independent contrasts, derived from a data-set of 72 species. Apart from among-species relatedness, we also controlled for possible confounding effect of plant size that may influence both seed size and seed number. A sowing experiment with 50 species was performed in the field. The seeds were sown in a grassland and subjected to two treatments, disturbance and undisturbed sward. Evidence for seed-limited recruitment was obtained for 45 of the species. Disturbance had a significant, or nearly significant, positive effect on recruitment for 16 of the 45 species. The relative recruitment in undisturbed sward increased with increased seed size, and both recruitment success and seedling size were positively related to seed size. We suggest that a trade-off between competitive ability and number of recruitment opportunities follows from the trade-off between seed size and seed number, through a causal chain from seed size via seedling size to recruitment success. The relationships between seed size, seed number and recruitment may be an important underlying mechanism for abundance and dynamics of plant species in grassland vegetation. This is an example of a direct link between evolutionary life-history theory, and theory of plant community structure.     

Inheritance of plant height and flowering time in the wild potato species,Solanum verrucosum Schlechtd

The inheritance was studied of plant height and flowering time in a hybrid between the short-stemmed, late-flowering introduction CPC 1339 of Solanum verrucosum and the tall-stemmed, early-flowering introduction PI 195172 of the same species. The range of plant height in CPC 1339 served as a criterion in classifying the populations into tall and short plants from measurements at four growth stages. The averages of these four measurements were used in the genetic analysis. The observed ratios fit a hypothesis of two dominant complementary genes for tall stem. Late flowering of CPC 1339 appears recessive to early flowering. The segregation ratios can be explained on the basis of two complementary dominant genes for early flowering.     

SlCAND1, encoding cullin-associated Nedd8-dissociated protein 1, regulates plant height,flowering time,seed germination,and root architecture in tomato

Plant Molecular Biology - Silencing of SlCAND1 expression resulted in dwarfish, loss of apical dominance, early flowering, suppression of seed germination, and abnormal root architecture in tomato...     

Molecular phylogenetic position of podostemaceae, a marvelous aquatic flowering plant family

Podostemaceae are aquatic herbs and are famous for their anomalous vegetative morphology, occurring only in rapids. Because of its peculiar morphology, there were no established theory nor accepted opinion on the phylogenetic position. Especially, Cusset and Cusset (1988) proposed the new class, Podostemopsida beside the Magnollopsida and Liliopsida. We, therefore, consequences extensive and detailled analyses using nucleotide sequences ofrbcL genes for two genera and three species of the family together with many representatives of the families of flowering plants to determine the closest ally. The conclusion was that the Crassulaceae is a sister group to the Podostemaceae.     

Genome-wide association study for flowering time,maturity dates and plant height in early maturing soybean (Glycine max) germplasm

Background

Soybean (Glycine max) is a photoperiod-sensitive and self-pollinated species. Days to flowering (DTF) and maturity (DTM), duration of flowering-to-maturity (DFTM) and plant height (PH) are crucial for soybean adaptability and yield. To dissect the genetic architecture of these agronomically important traits, a population consisting of 309 early maturity soybean germplasm accessions was genotyped with the Illumina Infinium SoySNP50K BeadChip and phenotyped in multiple environments. A genome-wide association study (GWAS) was conducted using a mixed linear model that involves both relative kinship and population structure.

Results

The linkage disequilibrium (LD) decayed slowly in soybean, and a substantial difference in LD pattern was observed between euchromatic and heterochromatic regions. A total of 27, 6, 18 and 27 loci for DTF, DTM, DFTM and PH were detected via GWAS, respectively. The Dt1 gene was identified in the locus strongly associated with both DTM and PH. Ten candidate genes homologous to Arabidopsis flowering genes were identified near the peak single nucleotide polymorphisms (SNPs) associated with DTF. Four of them encode MADS-domain containing proteins. Additionally, a pectin lyase-like gene was also identified in a major-effect locus for PH where LD decayed rapidly.

Conclusions

This study identified multiple new loci and refined chromosomal regions of known loci associated with DTF, DTM, DFTM and/or PH in soybean. It demonstrates that GWAS is powerful in dissecting complex traits and identifying candidate genes although LD decayed slowly in soybean. The loci and trait-associated SNPs identified in this study can be used for soybean genetic improvement, especially the major-effect loci associated with PH could be used to improve soybean yield potential. The candidate genes may serve as promising targets for studies of molecular mechanisms underlying the related traits in soybean.

Electronic supplementary material

The online version of this article (doi:10.1186/s12864-015-1441-4) contains supplementary material, which is available to authorized users.     

Seed size in tropical trees: a comparative study of factors affecting seed size in Peruvian angiosperms

Evolutionary comparative methods taking into account the potential effects of relatedness reveal that, among 202 species of animal-dispersed tropical woody angiosperms from Peru, large seeds may be an adaptation to: (1) dispersal by mammals rather than by birds and (2) greater plant height. Using the most powerful techniques currently available, appropriate comparisons were made between related species or species groups at all taxonomic levels, thus allowing use of all species in the data set. Even so, the results show no evidence of adaptation (i.e., a functional relationship) of seed mass to successional syndrome or to growth form (trees or vines). In previous cross-species analyses, seed mass has been linked to both of these ecological variables. The lack of relationship between seed mass and habitat use or growth form may be due to targeting the wrong trait to predict these two variables, or because seed mass is subject to exaptation, i.e., a particular seed mass has arisen for other reasons, but allows invasion into a habitat and currently serves to maintain that species in the habitat. Differentiation between these two explanations for the lack of correlation between seed mass and successional syndrome or growth form would entail species-by-species examination of the function of seed mass under natural conditions. The effect of relatedness on the ecological correlates of seed mass and plant height is determined for each of three taxonomic schemes. It is concluded that the three schemes do not differ greatly in the results obtained.     

Fruit size, crop mass, and plant height explain differential fruit choice of primates and birds

Seed dispersal by animals is an important ecological process shaping plant regeneration. In general, seed dispersers are highly variable and often opportunistic in their fruit choice. Despite much research, the factors that can explain patterns of fruit consumption among different animal groups remain contentious. Here, we analysed the interactions between 81 animal species feeding on the fruits of 30 plant species in Kakamega Forest, Kenya, during 840 h of observations. Our aim was to determine whether plant characteristics, fruit morphology, fruit colours and/or fruit compounds such as water, sugar, phenols and tannins explained the relative importance of fruit consumption by the two most important consumer groups, primates and birds. We found significant differences in fruit choice between both groups. Primates fed on larger fruits and on higher trees that had larger fruit crops, whereas birds were observed feeding on smaller fruits and on smaller plants producing fewer fruits. Fruit colours did not differ between fruits consumed by primates and those consumed by birds. However, differences in the fruit choice among frugivorous birds were associated with differences in fruit colours. Smaller plants with smaller fruits produced red fruits which contrasted strongly with the background; these fruits were dispersed by a distinct set of bird species. The contents of water, sugar, phenols and tannins did not differ between fruits eaten by primates and those eaten by birds. Some phylogenetic patterns were apparent; primates fed preferentially on a phylogenetically restricted subsample of large plants with large fruits of the subclass Rosidae. We discuss why the observed primate dispersal syndrome is most likely explained by a process of ecological fitting.     

A phylogenetic comparative study of flowering phenology along an elevational gradient in the Canadian subarctic

Climate change is affecting high-altitude and high-latitude communities in significant ways. In the short growing season of subarctic habitats, it is essential that the timing and duration of phenological phases match favorable environmental conditions. We explored the time of the first appearance of flowers (first flowering day, FFD) and flowering duration across subarctic species composing different communities, from boreal forest to tundra, along an elevational gradient (600–800 m). The study was conducted on Mount Irony (856 m), North-East Canada (54°90′N, 67°16′W) during summer 2012. First, we quantified phylogenetic signal in FFD at different spatial scales. Second, we used phylogenetic comparative methods to explore the relationship between FFD, flowering duration, and elevation. We found that the phylogenetic signal for FFD was stronger at finer spatial scales and at lower elevations, indicating that closely related species tend to flower at similar times when the local environment is less harsh. The comparatively weaker phylogenetic signal at higher elevation may be indicative of convergent evolution for FFD. Flowering duration was correlated significantly with mean FFD, with later-flowering species having a longer flowering duration, but only at the lowest elevation. Our results indicate significant evolutionary conservatism in responses to phenological cues, but high phenotypic plasticity in flowering times. We suggest that phylogenetic relationships should be considered in the search for predictions and drivers of flowering time in comparative analyses, because species cannot be considered as statistically independent. Further, phenological drivers should be measured at spatial scales such that variation in flowering matches variation in environment.     

浙江大山峰种子植物区系的统计分析

据调查统计浙江大山峰野生种子植物140科524属1032种(含种下分类群)。科、属、种的分布区类型分析表明,科以泛热带分布最多(43.6%),其次是世界分布(20%)和北温带(18.6%),温带分布少于热带分布(35∶77);属以泛热带分布最多(22.9%),其次是北温带分布(17.4%)和东亚分布(17.0%),温带分布多于热带分布(237∶230);种以中国特有分布最多(44.4%),其次是东亚分布(21.0%)和热带亚洲分布(17.4%),温带分布明显多于热带分布(317∶252),显示大山峰植物区系处于温带和热带分布的过渡区,具亚热带性质和地理成分复杂的特征,且与日本植物区系有密切关系。通过与邻近诸山属种相似性系数比较,说明它们关系密切,属同一自然区系。     

Effects of sample size and intraspecific variation in phylogenetic comparative studies: a meta‐analytic review

Comparative analyses aim to explain interspecific variation in phenotype among taxa. In this context, phylogenetic approaches are generally applied to control for similarity due to common descent, because such phylogenetic relationships can produce spurious similarity in phenotypes (known as phylogenetic inertia or bias). On the other hand, these analyses largely ignore potential biases due to within‐species variation. Phylogenetic comparative studies inherently assume that species‐specific means from intraspecific samples of modest sample size are biologically meaningful. However, within‐species variation is often significant, because measurement errors, within‐ and between‐individual variation, seasonal fluctuations, and differences among populations can all reduce the repeatability of a trait. Although simulations revealed that low repeatability can increase the type I error in a phylogenetic study, researchers only exercise great care in accounting for similarity in phenotype due to common phylogenetic descent, while problems posed by intraspecific variation are usually neglected. A meta‐analysis of 194 comparative analyses all adjusting for similarity due to common phylogenetic descent revealed that only a few studies reported intraspecific repeatabilities, and hardly any considered or partially dealt with errors arising from intraspecific variation. This is intriguing, because the meta‐analytic data suggest that the effect of heterogeneous sampling can be as important as phylogenetic bias, and thus they should be equally controlled in comparative studies. We provide recommendations about how to handle such effects of heterogeneous sampling.     

植物种子传播途径与基因组值和千粒重的相关性

种子传播对植物的繁殖、分布和进化至关重要,研究植物基因组、种子千粒重与种子传播途径间相关性,对于揭示植物种子入侵和基因组进化的遗传机制等具有十分重要的意义.本文在前期测定部分植物C值、检索植物C值数据库和种子数据信息库的基础上,对包含完整基因组信息(染色体条数、倍数、C值)、种子千粒重和种子传播途径的235种植物进行了统计和相关性分析.ANOVA结果表明,借助水、鸟、风传播的植物C值(1C水=1.3 pg,1C鸟=1.6 pg,1C风=2.0 pg)和基因组值(1Cx水=1.1 pg,1Cx鸟=1.3 pg,1Cx风=1.6Pg)均显著低于借助动物取食传播植物的(1C动=4.9 pg,1Cx动 =4.7 pg)(P＜0.05),但无助力扩散和动物携带与其他4种传播方式间均无显著差异(P＞0.05).235种植物物种间千粒重相差悬殊,就不同传播方式整体而言,以风力和动物携带为传播途径的植物种子千粒重(分别为7.2和13.5 g)明显低于以动物取食和水为传播途径的植物种子千粒重(分别为92.5和85.8 g),而无助力传播途径与其他5种传播途径的千粒重均没有显著差异(P＞0.05).进一步相关性分析表明,动物取食和水传播方式的植物基因组值和种子千粒重间均呈正相关(相关系数γ=0.33),其中动物取食的植物基因组值与千粒重呈显著正相关性(y=0.67 x+3.23,R2=0.11,P=0.04),但在其他传播途径中均无显著相关性.研究结果为揭示植物种子传播、分布和基因组进化等提供参考.     

Linking seed germination and plant height: a case study of a wetland community on the eastern Tibet Plateau

• Seed germination is the earliest trait expressed in a plant's life history, and it can directly affect the expression of post‐germination traits. Plant height is central to plant ecological strategies, because it is a major determinant of the ability of a species to compete for light. Thus, linking seed germination and plant height at the community level is very important to understanding plant fitness and community structure.
• Here, we tested storage condition and temperature requirements for germination of 31 species from a wetland plant community on the eastern Tibet Plateau and analysed correlation of germination traits with plant height in relation to storage condition.
• Germination percentage was positively related to plant height, and this relationship disappeared when seeds were incubated at a low temperature (i.e. 5 °C) or after they were stored under wet‐cold conditions. The response of seeds to dry+wet–cold storage was negatively related to plant height. Based on the scores of each species on the first two principal components derived from PCA, species were classified into two categories by hierarchical clustering, and there was a significant difference between germination and plant height of species in these two categories.
• These results suggest that the requirements for seed germination together with seasonal change in environmental conditions determine the window for germination and, in turn, plant growth season and resource utilisation and ultimately plant height.

     

Evolution of the third eye: a phylogenetic comparative study of parietal‐eye size as an ecophysiological adaptation in Liolaemus lizards

The parietal, or third, eye is a photosensory organ situated in the middle of the skull of many lizards. Despite many hypotheses, its exact ecological functions are still unclear. Studies have compared the presence and absence of a functioning parietal eye, although there are no quantitative studies of parietal‐eye traits in relation to ecology, physiology or behaviour. In the present study, we report the first comparative study of relative parietal‐eye size in relation to climatic and thermophysiological variables. We studied thirty species of Liolaemus, a genus of South‐American lizards inhabiting a range of climatic conditions, but found little evidence for adaptation to thermal environment, in that parietal‐eye size did not vary meaningfully with latitude, altitude or any measures of environmental temperature. Neither did it relate to thermophysiology; there was a weak relation to thermal tolerance, although this was partially confounded with body size, which explained 23% of the among‐species variance after controlling for within‐species variation. The negative results obtained could not be explained by phylogenetic constraints because we found no evidence of phylogenetic inertia. We also observed high intraspecific variation indicating that parietal‐eye size may not be under strong selection for accuracy. © 2010 The Linnean Society of London, Biological Journal of the Linnean Society, 2010, 101 , 870–883.