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1.
The genes encoding xylitol dehydrogenase (Texdh) and l-arabitol dehydrogenase (Telad) are involved in the fungal pentose pathway and were isolated from the thermophilic fungus Talaromyces emersonii, expressed in Escherichia coli, and the products purified to homogeneity. TeXDH showed activity toward xylitol and d-sorbitol. TeLAD was active with l-arabitol, xylitol, and d-sorbitol. Phylogenetic analysis showed TeLAD has evolved from d-sorbitol dehydrogenase as a result of environmental adaptation. Substrate specificity studies indicate that TeXDH is likely to have evolved from the more broadly acting TeLAD. Texdh and Telad expression was inducible by the same carbon sources responsible for induction of genes involved in biomass degradation, suggesting for the first time a coordinated regulatory control mechanism for expression of genes encoding extracellular hydrolases and intracellular metabolic genes in the pentose utilization pathways of T. emersonii. These data also suggest that TeXDH and TeLAD may be valuable in the production of xylitol, l-arabitol, and ethanol from renewable resources rich in pentose sugars.  相似文献   

2.
The type status is described for 65 taxa of the Orthalicoidea, classified within the families Megaspiridae (14), Orthalicidae (30), and Simpulopsidae (20); one taxon is considered a nomen inquirendum. Lectotypes are designated for the following taxa: Helix brephoides d’Orbigny, 1835; Simpulopsis cumingi Pfeiffer, 1861; Bulimulus (Protoglyptus) dejectus Fulton, 1907; Bulimus iris Pfeiffer, 1853. The type status of Bulimus salteri Sowerby III, 1890, and Strophocheilus (Eurytus) subirroratus da Costa, 1898 is now changed to lectotype according Art. 74.6 ICZN. The taxa Bulimus loxostomus Pfeiffer, 1853, Bulimus marmatensis Pfeiffer, 1855, Bulimus meobambensis Pfeiffer, 1855, and Orthalicus powissianus var. niveus Preston 1909 are now figured for the first time. The following taxa are now considered junior subjective synonyms: Bulimus marmatensis Pfeiffer, 1855 = Helix (Cochlogena) citrinovitrea Moricand, 1836; Vermiculatus Breure, 1978 = Bocourtia Rochebrune, 1882. New combinations are: Kuschelenia (Bocourtia) Rochebrune, 1882; Kuschelenia (Bocourtia) aequatoria (Pfeiffer, 1853); Kuschelenia (Bocourtia) anthisanensis (Pfeiffer, 1853); Kuschelenia (Bocourtia) aquila (Reeve, 1848); Kuschelenia (Bocourtia) badia (Sowerby I, 1835); Kuschelenia (Bocourtia) bicolor (Sowerby I, 1835); Kuschelenia (Bocourtia) caliginosa (Reeve, 1849); Kuschelenia (Bocourtia) coagulata (Reeve, 1849); Kuschelenia (Bocourtia) cotopaxiensis (Pfeiffer, 1853); Kuschelenia (Bocourtia) filaris (Pfeiffer, 1853); Kara indentata (da Costa, 1901); Clathrorthalicus magnificus (Pfeiffer, 1848); Simpulopsis (Eudioptus) marmartensis (Pfeiffer, 1855); Kuschelenia (Bocourtia) nucina (Reeve, 1850); Kuschelenia (Bocourtia) ochracea (Morelet, 1863); Kuschelenia (Bocourtia) peaki (Breure, 1978); Kuschelenia (Bocourtia) petiti (Pfeiffer, 1846); Clathrorthalicus phoebus (Pfeiffer, 1863); Kuschelenia (Bocourtia) polymorpha (d’Orbigny, 1835); Scholvienia porphyria (Pfeiffer, 1847); Kuschelenia (Bocourtia) purpurata (Reeve, 1849); Kuschelenia (Bocourtia) quechuarum Crawford, 1939; Quechua salteri (Sowerby III, 1890); Kuschelenia (Bocourtia) subfasciata Pfeiffer, 1853; Clathrorthalicus victor (Pfeiffer, 1854). In an addedum a lectotype is being designated for Bulimulus (Drymaeus) interruptus var. pallidus Preston, 1909. An index is included to all taxa mentioned in this paper and the preceding ones in this series (Breure and Ablett 2011, 2012, 2014).  相似文献   

3.
It is argued that alternate prey species in the diet of a food-limited generalist predator should reduce each other's equilibrial abundances, whether or not they directly compete. Such indirect, interspecific interactions are labeled apparent competition. Two examples are discussed in which an observed pattern of habitat segregation was at first interpreted as evidence for direct competition, but later interpreted as apparent competition resulting from shared predation. In order to study the consequences of predator-mediated apparent competition in isolation from other complicating factors, a model community is analyzed in which there is no direct interspecific competition among the prey. An explicit necessary condition for prey species coexistence is derived for the case of one predator feeding on many prey species. This model community has several interesting properties: (1) Prey species with high relative values for a parameter ra are “keystone” species in the community; (2) prey species can be excluded from the community by “diffuse” apparent competition; (3) large changes in the niche breadth of the predator need not correspond to large changes in predator density; (4) the prey trophic level as a whole is regulated by the predator, yet each of its constituent species is regulated by both the predator and available resources; (5) increased productivity may either increase, decrease, or leave unchanged the number of species in the community; (6) a decrease in density-independent mortality may decrease species diversity. These conclusions seem to be robust to changes in the prey growth equations and to the incorporation of predator satiation. By contrast, adding prey refugia or predator switching to the model weakens these conclusions. If the predator can be satiated or switched, the elements aij comprising the community matrix may have signs opposite the long-term effect of j upon i. The effect of natural selection upon prey species coexistence is discussed. Unless ri, Ki, and ai are tightly coupled, natural selection within prey species i will tend to decrease the equilibrial abundance of species j.  相似文献   

4.
Nitrous oxide (N2O) is an important greenhouse gas in the troposphere controlling ozone concentration in the stratosphere through nitric oxide production. In order to quantify bacteria capable of N2O reduction, we developed a SYBR green quantitative real-time PCR assay targeting the nosZ gene encoding the catalytic subunit of the nitrous oxide reductase. Two independent sets of nosZ primers flanking the nosZ fragment previously used in diversity studies were designed and tested (K. Kloos, A. Mergel, C. Rösch, and H. Bothe, Aust. J. Plant Physiol. 28:991-998, 2001). The utility of these real-time PCR assays was demonstrated by quantifying the nosZ gene present in six different soils. Detection limits were between 101 and 102 target molecules per reaction for all assays. Sequence analysis of 128 cloned quantitative PCR products confirmed the specificity of the designed primers. The abundance of nosZ genes ranged from 105 to 107 target copies g−1 of dry soil, whereas genes for 16S rRNA were found at 108 to 109 target copies g−1 of dry soil. The abundance of narG and nirK genes was within the upper and lower limits of the 16S rRNA and nosZ gene copy numbers. The two sets of nosZ primers gave similar gene copy numbers for all tested soils. The maximum abundance of nosZ and nirK relative to 16S rRNA was 5 to 6%, confirming the low proportion of denitrifiers to total bacteria in soils.  相似文献   

5.
The transversely-dividing flabellids consist of five genera (Truncatoflabellum, Placotrochides, Blastotrochus, Placotrochus, and Falcatoflabellum) and 45 species. A dichotomous key is provided for these five genera as well as the species of the genus Truncatoflabellum and Placotrochides, the other three genera being monotypic. A tabular key is also provided for the 38 species of Truncatoflabellum. Two new combinations are suggested (Truncatoflabellum gambierense and Truncatoflabellum sphenodeum) and two new species are described (Truncatoflabellum duncani and Truncatoflabellum mozambiquensis). All but one species are illustrated and accompanied by their known distribution and a guide to the pertinent literature for the species. New records of 19 of the 45 species are listed. The transversely-dividing flabellids range from the Middle Eocene to the Recent at depths of 2–3010 m, and constitute 60% of the 65 known extant species of transversely-dividing Scleractinia.  相似文献   

6.
CCAAT binding factors (CBFs) positively regulating the expression of the amdS gene (encoding acetamidase) and two penicillin biosynthesis genes (ipnA and aatA) have been previously found in Aspergillus nidulans. The factors were called AnCF and PENR1, respectively. Deletion of the hapC gene, encoding a protein with significant similarity to Hap3p of Saccharomyces cerevisiae, eliminated both AnCF and PENR1 binding activities. We now report the isolation of the genes hapB and hapE, which encode proteins with central regions of high similarity to Hap2p and Hap5p of S. cerevisiae and to the CBF-B and CBF-C proteins of mammals. An additional fungus-specific domain present in HapE was revealed by comparisons with the homologs from S. cerevisiae, Neurospora crassa, and Schizosaccharomyces pombe. The HapB, HapC, and HapE proteins have been shown to be necessary and sufficient for the formation of a CCAAT binding complex in vitro. Strains with deletions of each of the hapB, hapC, and hapE genes have identical phenotypes of slow growth, poor conidiation, and reduced expression of amdS. Furthermore, induction of amdS by omega amino acids, which is mediated by the AmdR pathway-specific activator, is abolished in the hap deletion mutants, as is growth on γ-aminobutyric acid as a sole nitrogen or carbon source. AmdR and AnCF bind to overlapping sites in the promoters of the amdS and gatA genes. It is known that AnCF can bind independently of AmdR. We suggest that AnCF binding is required for AmdR binding in vivo.  相似文献   

7.
New material collected recently throughout the Afrotropical region has led to a major reassessment of taxa within the genera Anelaphinis Kolbe, 1892, Atrichelaphinis Kraatz, 1898 and other closely related genera. As a result, the name Megalleucosma Antoine, 1989 is here synonymised with Anelaphinis and a lectotype is designated for the type species, Cetonia dominula Harold, 1879. The genus Atrichelaphinis is redefined and a new subgenus, Atrichelaphinis (Eugeaphinis), is proposed for Elaphinis simillima Ancey, 1883, Elaphinis vermiculata Fairmaire, 1894, Niphetophora rhodesiana Péringuey, 1907, Atrichelaphinis deplanata Moser, 1907 (with Anelaphinis kwangensis Burgeon, 1931 as junior synonym) and Anelaphinis sternalis Moser, 1914. Additionally, three new species and one new subspecies are recognised and described in this new subgenus: Atrichelaphinis (Eugeaphinis) bomboesbergica sp. n. from South Africa; Atrichelaphinis (Eugeaphinis) bjornstadi sp. n. from Tanzania; Atrichelaphinis (Eugeaphinis) garnieri sp. n. from south–east Africa (Tanzania, Zimbabwe); and Atrichelaphinis (Eugeaphinis) deplanata minettii ssp. n. from central Africa (Malawi, Mozambique, Congo-Kinshasa, Congo-Brazzaville, South Africa, Rwanda, Zambia, Zimbabwe). The genus Atrichelaphinis is compared to its closest relatives and two separate keys are proposed, one for Atrichelaphinis and one for the sub-Saharan genera exhibiting completely or partially fused parameres.  相似文献   

8.
Environmental stress played a major role in the evolution of the blind mole rat superspecies Spalax ehrenbergi, affecting its adaptive evolution and ecological speciation underground. Spalax is safeguarded all of its life underground from aboveground climatic fluctuations and predators. However, it encounters multiple stresses in its underground burrows including darkness, energetics, hypoxia, hypercapnia, food scarcity, and pathogenicity. Consequently, it evolved adaptive genomic, proteomic, and phenomic complexes to cope with those stresses. Here I describe some of these adaptive complexes, and their theoretical and applied perspectives. Spalax mosaic molecular and organismal evolution involves reductions or regressions coupled with expansions or progressions caused by evolutionary tinkering and natural genetic engineering. Speciation of Spalax in Israel occurred in the Pleistocene, during the last 2.00–2.35 Mya, generating four species associated intimately with four climatic regimes with increasing aridity stress southwards and eastwards representing an ecological speciational adaptive trend: (Spalax golani, 2n = 54  S. galili, 2n = 52  S. carmeli, 2n = 58  S. judaei, 2n = 60). Darwinian ecological speciation occurred gradually with relatively little genetic change by Robertsonian chromosomal and genic mutations. Spalax genome sequencing has just been completed. It involves multiple adaptive complexes to life underground and is an evolutionary model to a few hundred underground mammals. It involves great promise in the future for medicine, space flight, and deep-sea diving.  相似文献   

9.
The generalist parasite Trypanosoma cruzi has two phylogenetic lineages associated almost exclusively with bats—Trypanosoma cruzi Tcbat and the subspecies T. c. marinkellei. We present new information on the genetic variation, geographic distribution, host associations, and potential vectors of these lineages. We conducted field surveys of bats and triatomines in southern Ecuador, a country endemic for Chagas disease, and screened for trypanosomes by microscopy and PCR. We identified parasites at species and genotype levels through phylogenetic approaches based on 18S ribosomal RNA (18S rRNA) and cytochrome b (cytb) genes and conducted a comparison of nucleotide diversity of the cytb gene. We document for the first time T. cruzi Tcbat and T. c. marinkellei in Ecuador, expanding their distribution in South America to the western side of the Andes. In addition, we found the triatomines Cavernicola pilosa and Triatoma dispar sharing shelters with bats. The comparisons of nucleotide diversity revealed a higher diversity for T. c. marinkellei than any of the T. c. cruzi genotypes associated with Chagas disease. Findings from this study increased both the number of host species and known geographical ranges of both parasites and suggest potential vectors for these two trypanosomes associated with bats in rural areas of southern Ecuador. The higher nucleotide diversity of T. c. marinkellei supports a long evolutionary relationship between T. cruzi and bats, implying that bats are the original hosts of this important parasite.  相似文献   

10.
We recently showed that type II signal peptidase (SPaseII) encoded by lspA is the target of an antibiotic called TA (myxovirescin), which is made by Myxococcus xanthus. SPaseII cleaves the signal peptide during bacterial lipoprotein processing. Bacteria typically contain one lspA gene; however, strikingly, the M. xanthus DK1622 genome contains four (lspA1 to lspA4). Since two of these genes, lspA3 and lspA4, are located in the giant TA biosynthetic gene cluster, we hypothesized they may play a role in TA resistance. To investigate the functions of the four M. xanthus lspA (lspAMx) genes, we conducted sequence comparisons and found that they contained nearly all the conserved residues characteristic of SPaseII family members. Genetic studies found that an Escherichia coli ΔlspA mutation could be complemented by any of the lspAMx genes in an lpp mutant background, but not in an E. coli lpp+ background. Because Lpp is the most abundant E. coli lipoprotein, these results suggest the M. xanthus proteins do not function as efficiently as the host enzyme. In E. coli, overexpression of each of the LspAMx proteins conferred TA and globomycin resistance, although LspA3 conferred the highest degree of resistance. In M. xanthus, each lspAMx gene could be deleted and was therefore dispensable for growth. However, lspA3 or lspA4 deletion mutants each exhibited a tan phase variation bias, which likely accounts for their reduced-swarming and delayed-development phenotypes. In summary, we propose that all four LspAMx proteins function as SPaseIIs and that LspA3 and LspA4 might also have roles in TA resistance and regulation, respectively.  相似文献   

11.
12.
The genus Catomus Allard and the allied genera of the fauna of Kazakhstan, Middle Asia, the Caucasus, and China are revised. The subgenus Stenomacidius Seidlitz, 1896 is synonymized with the genus Cylindronotus Faldermann, 1837. A new genus, Eustenomacidius gen. n., with the type species Helops luridus Ménétriés, 1848 is described. The following new combinations are proposed: Cylindronotus (s. str.) acutangulus (Seidlitz, 1896), Odocnemis anatolicus (Kaszab, 1961), Eustenomacidius hirtipennis (Seidlitz, 1896), Eustenomacidius turcmenicus (Medvedev, 1964), Eustenomacidius mongolicus (Kaszab, 1968), and Eustenomacidius wagnae (Ren, 1999). The following new subgenera are described: Montanocatomus, Sinocatomus (genus Catomus), and Caucasohelops (genus Eustenomacidius). The name Catomodontus Koch, 1935 is considered invalid. A new genus Xanthohelops closely related to Eustenomacidius is described from the Kara Kum Desert (Turkmenistan). The following new species and subspecies are described: Catomus (s. str.) noctivagus, C. (s. str.) indubitatus, C. (Montanocatomus) fabiani, C. (Sinocatomus) solitarius, Eustenomacidius (Caucasohelops) svetlanae with a new subspecies E. (Caucasohelops) svetlanae araxi subsp. n., Xanthohelops karakumicus Nabozhenko et Medvedev, spp. n. The following new synonyms are established: Cylindronotus Faldermann, 1837 = Stenomacidius Seidlitz, 1896; Eustenomacidius luridus (Ménétriés, 1848) = Stenomax laevicollis Kraatz, 1882, = Stenomax lucidicollis Kraatz, 1882, = Catomus (Stenomacidius) provocator Reitter, 1922; Catomus (Montanocatomus) reinigi (Schuster, 1931) = Catomus (Stenomacidius) alaensis G. Medvedev, 1970; Catomus fragilis (Ménétriés, 1848) = Catomus subniger Reitter, 1901; Catomus karakalensis G. Medvedev, 1964 = Catomus dolini G. Medvedev, 2004. Lectotypes are designated for the following species: Cylindronotus acutangulus (Seidlitz, 1896); Eustenomacidius hirtipennis (Seidlitz, 1896); Catomus fragilis (Ménétriés, 1848); Catomus reinigi (Schuster, 1931); Catomus provocator Reitter, 1922; Catomus subniger Reitter, 1901; Catomus niger (Kraatz, 1882) and Catomus antoniae Reitter, 1890. Morphological adaptations of species to particular environmental conditions, relationships of the new taxa and their positions in the tribe Helopini are considered. Keys to genera of the tribe Helopini of the Caucasus, Middle Asia, and Kazakhstan, and to subgenera and species of Catomus and Eustenomacidius of the Caucasus, Middle Asia, Kazakhstan, and China are given.  相似文献   

13.
Heliobacteria are a recently discovered group of anoxygenic phototrophic bacteria, first described in 1983. Heliobacteria contain bacteriochlorophyll g, a pigment unique to species of this group, and synthesize the simplest photosynthetic complexes of all known phototrophs. Also, unlike all other phototrophs, heliobacteria lack a mechanism for autotrophy and produce endospores. Four genera of heliobacteria containing a total of 10 species are known. Species of the genera Heliobacterium, Heliobacillus, and Heliophilum grow best at neutral pH, whereas species of Heliorestis are alkaliphilic. Heliobacterium, Heliobacillus, and Heliophilum species form one phylogenetic clade of heliobacteria, while Heliorestis species form a second within the phylum Firmicutes of the domain Bacteria. Heliobacteria have a unique ecology, being primarily terrestrial rather than aquatic phototrophs, and may have evolved a mutualistic relationship with plants, in particular, rice plants. The genome sequence of the thermophile Heliobacterium modesticaldum supports the hypothesis that heliobacteria are “minimalist phototrophs” and that they may have played a key role in the evolution of phototrophic bacteria.  相似文献   

14.
Relationship loci (rQTL) exist when the correlation between multiple traits varies by genotype. rQTL often occur due to gene-by-gene (G × G) or gene-by-environmental interactions, making them a powerful tool for detecting G × G. Here we present an empirical analysis of apolipoprotein E (APOE) with respect to lipid traits and incident CHD leading to the discovery of loci that interact with APOE to affect these traits. We found that the relationship between total cholesterol (TC) and triglycerides (ln TG) varies by APOE isoform genotype in African-American (AA) and European-American (EA) populations. The e2 allele is associated with strong correlation between ln TG and TC while the e4 allele leads to little or no correlation. This led to a priori hypotheses that APOE genotypes affect the relationship of TC and/or ln TG with incident CHD. We found that APOE*TC was significant (P = 0.016) for AA but not EA while APOE*ln TG was significant for EA (P = 0.027) but not AA. In both cases, e2e2 and e2e3 had strong relationships between TC and ln TG with CHD while e2e4 and e4e4 results in little or no relationship between TC and ln TG with CHD. Using ARIC GWAS data, scans for loci that significantly interact with APOE produced four loci for African Americans (one CHD, one TC, and two HDL). These interactions contribute to the rQTL pattern. rQTL are a powerful tool to identify loci that modify the relationship between risk factors and disease and substantially increase statistical power for detecting G × G.  相似文献   

15.
The Chinese species of the genera Omicrogiton Orchymont, 1919, Peratogonus Sharp, 1884 and Mircogioton Orchymont, 1937 are reviewed, diagnosed and keyed. Mircogioton and Omicrogiton are reported for the first time from China, Peratogonus for the first time for mainland China. Five species are recognized: Omicrogiton coomani Balfour-Browne, 1939 (Guangdong, Hongkong), Omicrogiton hainanensis sp. n. (Hainan), Omicrogiton roberti sp. n. (Hainan), Mircogioton coomani Orchymont, 1937 (Yunnan), and Peratogonus reversus Sharp, 1884 (Guangdong, Jiangxi, Taiwan). Lectotype of Omicrogiton coomani is designated. Mircogioton cognitus (Malcolm, 1981), syn. n. is considered a junior subjective synonym of Mircogioton coomani Orchymont, 1939. Species of Mircogioton and Omicrogiton inhabit decaying banana trunks, whereas Peratogonus reversus was always collected from moist forest leaf litter.  相似文献   

16.
A checklist of the families Chaoboridae, Dixidae, Thaumaleidae, Psychodidae and Ptychopteridae (Diptera) recorded from Finland is given. Four species, Dixella dyari Garret, 1924 (Dixidae), Threticus tridactilis (Kincaid, 1899), Panimerus albifacies (Tonnoir, 1919) and Panimerus przhiboroi Wagner, 2005 (Psychodidae) are reported for the first time from Finland.  相似文献   

17.
The interaction between the hermit crab, Pagurus longicarpus, and the shell epibiont, Hydractinia symbiolongicarpus, varies from mutualism to parasitism based on the environmental context. We tested the hypothesis that this interaction also varies as a function of hermit crab sex. Given that recent work showed a negative effect of Hydractinia on female reproduction, we predicted a greater frequency of males in Hydractinia shells in the field and a stronger preference by males than females for shells with Hydractinia. Field collections documented a significantly greater proportion of males than females occupying shells with Hydractinia, and a significantly greater proportion of ovigerous females than non-ovigerous females in shells with Hydractinia. In laboratory shell-switching experiments, a greater proportion of males than females chose to enter shells with Hydractinia, but there was no difference in the proportions of males and females that vacated shells with Hydractinia.We examined whether the presence of Hydractinia influenced predation rates. Blue crabs fed on more than twice as many hermit crabs in shells with Hydractinia as compared to bare shells, but there was no significant difference for stone crabs. Laboratory experiments showed that the force required to crush shells was significantly greater for shells without Hydractinia. Thus, the lower occupancy and preference exhibited by females than males for shells with Hydractinia appears to result both from the decreased reproduction shown in past studies and an increase in predation risk.  相似文献   

18.
Age and growth estimates for the smooth skate, Malacoraja senta, were derived from 306 vertebral centra from skates caught in the North Atlantic off the coast of New Hampshire and Massachusetts, USA. Males and females were aged to 15 and 14 years, respectively. Male and female growth diverged at both ends of the data range and the sexes required different growth functions to describe them. Males followed a traditional growth scenario and were best described by a von Bertalanffy curve with a set L o (11 cm TL) where L inf  = 75.4 cm TL, K = 0.12. Females required the use of back-calculated values to account for a lack of small individuals, using these data they were best described by a von Bertalanffy curve where growth parameters derived from vertebral length-at-age data are L inf  = 69.6 cm TL, K = 0.12, and L o  = 10.  相似文献   

19.
The genus Aseptis McDunnough (Lepidoptera, Noctuidae, Noctuinae, Xylenini, Xylenina) is revised to include 15 species based on morphological and molecular data. Several new synonymies are introduced. In addition, two genera are described because of significant morphological differences from Aseptis: Paraseptis gen. n., and Viridiseptis gen. n., resulting in the new combinations Paraseptis adnixa (Grote), comb. n., and Viridiseptis marina (Grote), comb. n. Although this work is primarily based on morphological data, DNA sequence data for the 658-base pair “barcode” segment of the mitochondrial gene for subunit 1 of cytochrome c oxidase was used as a secondary support for taxonomic changes within Aseptis and for the two new genera. Our work should provide clarity and stability in a previously difficult genus.  相似文献   

20.
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