萜烯生物合成中关键酶的研究进展*

萜烯类化合物是一类高度多样化的天然产物,具有抗肿瘤、抗氧化及免疫调节等生理活性,因此被广泛应用于医药健康、食品、化妆品领域。然而,直接从自然资源中获取萜烯类化合物效率低、成本高,且往往对生态环境产生不利影响,不能实现绿色可持续生产。微生物合成萜烯类化合物近年来备受关注,研究人员从合成途径的构建与调控、关键酶的理性及半理性改造、发酵工艺优化等多个方面进行了探究,取得了丰硕的成果。其中,合成途径中关键酶的催化效率是影响微生物生产萜烯类化合物的重要因素。针对关键酶的研究对于提高微生物合成萜烯类化合物的能力,推动该类天然产物微生物生产的大规模应用具有重要意义。对萜烯类化合物合成途径中的3-羟基-3-甲基戊二酰辅酶A还原酶(HMGR)、1-脱氧-D-木酮糖-5-磷酸合酶(DXS)、异戊二烯基二磷酸合成酶(IDS)和萜烯合酶(TPS)4种关键酶的研究进行了综述,并总结讨论了如何通过代谢工程和蛋白质工程手段以及合成生物学技术调节关键酶的催化活性,提高微生物合成萜烯类化合物的效率,对未来利用微生物合成萜烯类化合物的发展进行了展望。     

植物花色苷生物合成酶类的亚细胞组织研究进展

花色苷类化合物是类黄酮合成途径的有色末端产物,其合成需要多种酶类催化完成.花色苷生物合成的相关酶在细胞质中被组织成与膜联系的多酶复合体,该复合体对于花色苷生物合成途径的整个效率、专一性和调节具有重要意义.本文对植物花色苷生物合成相关酶的亚细胞定位、所形成的复合体的模型及其存在问题进行了综述.花色苷生物合成多酶复合体的建立将有助于演绎出一个关于细胞代谢的新“三维观”,可为花色苷生产的代谢工程的理性调控创造更有效的手段.     

天然产物生物合成与抗肿瘤药物合成生物学研究

结构复杂多样的天然产物是现代药物的重要组成部分和新药发现的重要源泉.天然产物的生物合成研究,是从基因和蛋白水平阐明天然产物的合成途径,通过酶催化的化学反应将基因与化合物的结构单元建立一种对应关系,从而理解自然界神奇的化学合成、生物拮抗及生理调控过程.天然产物的合成生物学研究核心是通过在发酵友好、高效的微生物中设计、构建目标化合物的生物合成途径,经系统地调控和优化重组微生物,从而发酵生产来源稀缺的天然产物类药物、前体或新化合物.本文结合相关领域的进展,对本研究组近年来关于抗肿瘤天然产物生物合成及抗癌药物合成生物学的工作进行系统的介绍.     

来源卤化二型聚酮类生物合成基因簇的两种关键功能基因鉴定与表达

为催化卤化产物,挖掘具有生物活性的新卤化物提供新的方法途径,拟构建卤化酶原核表达载体催化天然卤化物的卤化过程.对链霉菌Streptomyces sp.FJS31-2基因组中一个II型PKS类产物zunyimycin生物合成基因簇进行系列分析,针对其中的后修饰酶卤化酶基因和单加氧酶基因进行原核表达纯化.通过分子生物学手段...     

细胞色素P450酶与微生物药物创制北大核心CSCD

细胞色素P450酶广泛存在于动植物和微生物体内,具有底物结构多样性和催化反应类型多样性,在天然产物生物合成中扮演重要作用。P450酶可在温和条件下高选择性地催化结构复杂有机化合物中惰性C-H键的氧化反应,具备化学催化剂难以比拟的优势,因此在微生物制药领域具有广阔的应用空间。本文综述了参与天然产物生物合成的P450酶近年来的研究进展;P450酶的酶工程改造、生物转化实践及其在微生物药物创制方面的应用现状;探讨了P450酶的工业应用瓶颈及其解决途径;并对P450酶未来的应用前景进行了展望。     

紫杉醇生物合成途径中相关酶的研究进展

抗癌新药紫杉醇是具有萜类环状结构的一种重要次生代谢产物 ,研究紫杉醇的生物合成对于通过基因工程手段提高紫杉醇的产量 ,解决目前资源紧缺造成的巨大供求矛盾具有重要意义 ,这就需要对紫杉醇生物合成途径中催化各步反应 (尤其是关键步骤 )的酶以及编码这些酶的基因有个全面的了解。对近年来紫杉醇生物合成途径中相关酶的研究进行了综述 ,大部分酶及相关基因已被分离、克隆 ,但还有一些酶及相关基因没有发现 ,有待继续深入研究。     

白桦三萜的合成和调控

白桦树叶和树皮中含有次生代谢产物白桦三萜,其中白桦树外皮中含有丰富的羽扇豆烷型的三萜白桦酯醇和白桦酯酸,这两种天然产物具有抑制人免疫缺陷病毒复制和选择性杀死癌细胞等药理活性,并显示出与以往药物不同的作用机制,疗效高而毒性低,被认为是具有一定开发潜力的抗癌、抗艾滋病类先锋药物。本丈就天然药物成分白桦三萜组成、分布的组织特异性、药理活性、代谢途径、环境调控和白桦三萜生物合成关键酶基因克隆的研究进展作一介绍。     

链霉菌Streptomyces antibioticus NRRL 8167中Naphthgeranine A生物合成基因簇的分析鉴定

【背景】微生物来源的天然产物是小分子药物或药物先导物的重要来源。对链霉菌Streptomyces antibioticus NRRL 8167的基因组分析显示,其包含多个次级代谢产物的生物合成基因簇,具有产生多种新化合物的潜力。【目的】对链霉菌S. antibioticus NRRL 8167中次级代谢产物进行研究,以期发现结构新颖或生物活性独特的化合物,并对相应产物的生物合成基因簇和生物合成途径进行解析。【方法】利用HPLC图谱结合特征性紫外吸收和LC-MS方法,排除S. antibioticus NRRL 8167产生的已知化合物,确定具有特殊紫外吸收的化合物作为挖掘对象,然后利用正、反相硅胶柱色谱、高效液相色谱等技术对次级代谢产物进行分离纯化,分离化合物。利用质谱及核磁共振光谱技术对化合物结构进行解析和鉴定;提取链霉菌S. antibioticus NRRL 8167基因组DNA,利用PacBio测序平台进行基因组测序;利用生物信息学对基因组进行注释,并对合成该化合物的基因簇进行定位分析,推导其生物合成途径。【结果】确定这个化合物是NaphthgeranineA,属于聚酮类化合物。全基因组序列分析发现S.antibioticusNRRL8167基因组含有28个次级代谢产物生物合成基因簇,其中基因簇20可能负责Naphthgeranine A的生物合成,并对其生物合成途径进行了推导。【结论】基于紫外吸收光谱和质谱特征,从S. antibioticus NRRL 8167菌株的发酵提取物中分离鉴定了一个聚酮类化合物Naphthgeranine A。该菌株的全基因组测序为其生物合成基因簇的鉴定提供了前提,对Naphthgeranine A生物合成基因簇和生物合成途径的推测为进一步研究这个化合物的生物合成机制奠定了基础。     

抗癌药物榄香烯的生物合成及关键酶吉马烯A合酶的优化

榄香烯是我国拥有自主知识产权的抗肿瘤药物之一,因其抗肿瘤活性强、作用范围广、毒副作用轻微和不易产生耐药性等优点,被广泛应用于各类恶性肿瘤的临床治疗中。榄香烯的生产主要依靠药用植物温郁金的分离提取。但温郁金的榄香烯含量低、分离纯化难度大、得率低且成本高,严重阻碍了榄香烯的大规模生产与应用。随着合成生物学的发展,利用微生物构建细胞工厂用于生物合成天然药物成为研究热点,也为榄香烯的生产提供了新的思路。近年来,对榄香烯的生物合成研究在不断深入。研究者通过代谢工程、组合生物学和基因工程等手段,阐明榄香烯生物合成途径和关键酶,已经成功克隆了榄香烯生物合成途径上的一些关键酶基因,初步实现榄香烯的异源生物合成。本文以合成生物学研究思维概述榄香烯生物合成途径及其工程菌的优化,重点综述关键酶吉马烯A合酶(germacrane A synthase, GAS)。从限速酶基因的过表达和分流基因的敲除,融合表达酶工程策略、吉马烯A合酶的体外进化几方面,对其生物合成途径的改造策略进行阐述。同时,也分析提高异源生物合成榄香烯产量所面临的问题与挑战,为榄香烯的高效生物合成提供参考。     

戊二酰亚胺类天然产物生物合成研究进展

微生物天然产物是天然药物的重要组成部分,而天然产物的良好生物活性很大程度上取决于发挥药效的结构基团。这些特殊药效基团的生物合成,通常是利用小分子羧酸、氨基酸等结构简单的初级代谢产物,经过复杂的生物化学过程,最终合成结构复杂活性多样的天然产物。戊二酰亚胺类天然产物是一类重要的细菌来源天然产物,它们具有良好的生物活性,是潜在的先导化合物,部分化合物已被开发成分子探针。本文综述了近年来微生物来源的戊二酰亚胺类天然产物及其生物合成研究,包括Iso-Migrastatin、Lactimidomyin、Cycloheximide、Streptimidone、Gladiostatin、Sesbanimide等,对戊二酰亚胺类天然产物的生物合成研究,将有效促进通过基因组挖掘策略寻找新型戊二酰亚胺类天然产物。     

Patterns of mitochondrial development in reserve tissues of germinated seeds: A survey

Patterns of mitochondrial development in reserve tissues of several species of seeds were examined during 3 to 4 days after the start of imbibition. In starch-storing seeds (cowpea, kidney bean, Egyptian kidney bean, mung bean, black gram and soybean), mitochondrial activities (state 3 respiration rate, respiratory control ratio) increased during the first 1 to 2 days after imbibition and leveled off thereafter. The initial increase in the activities was little affected by cycloheximide and chloramphenicol. Activities of mitochondrial enzymes (succinate dehydrogenase, EC 1.3.99.1; NAD⁺-malate dehydrogenase, EC 1.1.1.37; cytochrome oxidase, EC 1.9.3.1) did not change much during the experimental period. This suggests that mitochondrial development in starch-storing seeds is primarily due to improvement of pre-existing mitochondria. On the other hand, in the lipid-storing seeds examined (pumpkin, cucumber, okra and castor bean), the rate of mitochondrial respiration and activities of mitochondrial enzymes continued to increase markedly during the experimental period. These increases were strongly inhibited by cycloheximide and chloramphenicol. This indicates that active de novo synthesis of mitochondrial proteins is primarily responsible for the development of organelle activities. The possibility was suggested that the patterns of mitochondrial development in reserve tissues of imbibed seeds might be determined by the kinds of reserve substances.     

Expression, purification, refolding and characterization of a putative lysophospholipase from Pyrococcus furiosus: retention of structure and lipase/esterase activity in the presence of water-miscible organic solvents at high temperatures

A putative lysophospholipase (PF0480) encoded by the Pyrococcus furiosus genome has previously been cloned and expressed in Escherichia coli. Studies involving crude extracts established the enzyme to be an esterase; however, owing presumably to its tendency to precipitate into inclusion bodies, purification and characterization have thus far not been reported. Here, we report the overexpression and successful recovery and refolding of the enzyme from inclusion bodies. Dynamic light scattering suggests that the enzyme is a dimer, or trimer, in aqueous solution. Circular dichroism and fluorescence spectroscopy show, respectively, that it has mixed beta/alpha structure and well-buried tryptophan residues. Conformational changes are negligible over the temperature range of 30–80 °C, and over the concentration range of 0–50% (v/v) of water mixtures with organic solvents such as methanol, ethanol and acetonitrile. The enzyme is confirmed to be an esterase (hydrolyzing p-NP-acetate and p-NP-butyrate) and also shown to be a lipase (hydrolyzing p-NP-palmitate), with lipolytic activity being overall about 18- to 20-fold lower than esterase activity. Against p-NP-palmitate the enzyme displays optimally activity at pH 7.0 and 70 °C. Remarkably, over 50% activity is retained at 70 °C in the presence of 25% acetonitrile. The high organic solvent stability and thermal stability suggest that this enzyme may have useful biodiesel-related applications, or applications in the pharmaceutical industry, once yields are optimized.     

不同寄主植物继代饲养后草地贪夜蛾幼虫生理酶活性差异

为了明确继代饲喂不同寄主植物对草地贪夜蛾幼虫体内生理酶活性的影响,在室内分别用3种寄主植物叶片饲养草地贪夜蛾多代,测定其F3代5龄幼虫体内保护酶（SOD,POD,CAT）、消化酶（脂肪酶、胃蛋白酶和α-淀粉酶）和解毒酶（GSTs,CarEs,CYP450s）活性差异,并分析不同寄主植物次生代谢物含量与幼虫体内酶活及其生长发育的相关性。结果表明,取食马铃薯叶片的F3代幼虫总发育历期最长,取食小麦的最短,两者间差异显著;小麦叶片中的单宁、总酚、类黄酮和生物碱含量均显著低于玉米和马铃薯;草地贪夜蛾幼虫体内保护酶活性均为取食小麦叶片的最低,取食马铃薯叶片的最高,其中取食马铃薯叶片的草地贪夜蛾体内POD和SOD酶活性达取食小麦的1.34和1.26倍;以3种寄主为食的F3代幼虫脂肪酶和α-淀粉酶活性变化不大,但持续饲喂马铃薯叶片3个世代可导致草地贪夜蛾幼虫体内胃蛋白酶活性显著升高,达10.502 U/mg. prot,为持续饲喂玉米叶片幼虫（1.508 U/mg. prot）的6.96倍以上。连续饲喂3种寄主叶片后的幼虫GSTs和CarEs活性无显著性差异,但取食玉米叶片的幼虫体内细胞色素P450s（CYP450s）活性显著高于取食小麦和马铃薯的幼虫。可见,连续多代取食次生物质含量不同的寄主植物会使草地贪夜蛾体内部分酶活性发生变化,并对幼虫的生长发育产生影响。     

Antimicrobial enzymes: An emerging strategy to fight microbes and microbial biofilms

With the increasing prevalence of antibiotic resistance, antimicrobial enzymes aimed at the disruption of bacterial cellular machinery and biofilm formation are under intense investigation. Several enzyme-based products have already been commercialized for application in the healthcare, food and biomedical industries. Successful removal of complex biofilms requires the use of multi-enzyme formulations that contain enzymes capable of degrading microbial DNA, polysaccharides, proteins and quorum-sensing molecules. The inclusion of anti-quorum sensing enzymes prevents biofilm reformation. The development of effective complex enzyme formulations is urgently needed to deal with the problems associated with biofilm formation in manufacturing, environmental protection and healthcare settings. Nevertheless, advances in synthetic biology, enzyme engineering and whole DNA-Sequencing technologies show great potential to facilitate the development of more effective antimicrobial and anti-biofilm enzymes.     

Pectic and cellulolytic enzymes in soybeans

The dominant cell wall degrading enzymes detected in extracts from 6-day-old, dark grown, Lee soybean seedlings carried out random (endo) and hydrolytic cleavages of pectic acid, pectin and methylcellulose. The pH optima of these activities were 6·0, 6·5 and 5·7 respectively. Monogalacturonic acid and another unidentified product accumulated during the degradation of polygalacturonic acid.     

Lytic enzyme complex of an antagonistic Bacillus sp. X-b: isolation and purification of components

Bacillus sp. X-b, a biocontrol agent against certain plant pathogenic fungi, secretes a complex of hydrolytic enzymes, composed of chitinase, chitosanase, laminarinase, lipase and protease. Homogenized mycelium of basidiomycete Macrolepiota procera induced activities of these enzymes more effectively than colloidal chitin or partially purified cell walls of another basidiomycete Polyporus squamosus. Subjected to a multi-step purification, the specific activity of chitinase increased 36-fold, chitosanase 69-fold, lipase 44-fold and laminarinase 15-fold. Partially purified chitinase showed two major bands with molecular masses of 46 000 and 35 000 on sodium dodecyl sulfate–polyacrylamide gel electrophoresis while chitosanase and lipase appeared as single bands with molecular masses of 27 000 and 62 000, respectively.     

Interactions of betulinic acid with xenobiotic metabolizing and antioxidative enzymes in DMBA-treated Sprague Dawley female rats

Cancer chemoprevention is related to classical epidemiology and involves the use of agents that inhibit, delay, or reverse the carcinogenesis that occurs as a result of accumulation of mutations and increased proliferation. Betulinic acid is known for its cytotoxic effects against a panel of cancer cell lines. In the present study, interactions of betulinic acid (BA) with xenobiotic metabolizing enzymes including mixed function oxidases (cytochrome b5, P420, P450, NADPH cytochrome P450 reductase, and NADH cytochrome b5 reductase), phase II enzymes (GST, DT-diaphorase, γ-glutamyl transpeptidase), LDH, antioxidative enzymes (glutathione reductase, SOD, catalase, ascorbate peroxidase, and guaiacol peroxidase), and lipid peroxidation are studied alone as well as in the presence of 7,12 dimethylbenzanthracene (DMBA)—a potent carcinogen using Sprague Dawley female rats. The effect of BA on reduced glutathione content and protein content is also taken into consideration. It has been found that administration of BA decreased the level of mixed function oxidases that are involved in the conversion of carcinogen to electrophile, elevated the level of phase II enzymes which participated in the removal of electrophiles by sulfation, conjugation etc. It has been found that BA effectively removed or neutralized the reactive species by the action of phase II enzymes and such an effect was reflected from the specific activities of antioxidative enzymes which were found to be lower as compared to positive control (DMBA-treated group) and in some cases even that of untreated control. BA was also found to have a pronounced effect in protecting the animals from lipid peroxidation as evident from the reduced levels of TBARS, conjugated diene, and lipid hydroperoxide formation. This study highlights the role of BA in modulating the activities of xenobiotic and antioxidative enzymes that have putative roles in cancer initiation and proliferation.     

Comparative Effects of Dietary Fat Types on Hepatic Enzyme Activities Related to the Synthesis and Oxidation of Fatty Acid and to Lipogenesis in Rats

The effects of different types of dietary fat on the activities of hepatic enzymes related to fatty acid synthesis {glucose-6-phosphate dehydrogenase (G6PDH) and acetyl-CoA carboxylase ACC)}, oxidation {acyl-CoA synthetase (AST), carnitine palmitoyl transferase (CPT), and peroxisomal β-oxidation (P βOX)}, and lipogenesis {phosphatidate phosphohydrolase (PAP), diacylglycerol acyltransferase (DGAT), and phosphocholine diacylglycerol transferase (PCDGT)}, and plasma and liver lipid levels were investigated in male Wistar rats. The animals were 6 weeks old and about 120 g of body weight, and were fed on test diets containing 20% of a mixture of tripalmitin, tristearin and corn oil (SFA), olive oil (OLI), sunflower oil (SUN), linseed oil (LIS), and sardine oil (SAR) for 2 weeks. The concentrations of plasma total cholesterol (T-CHOL), high-density lipoprotein-cholesterol (HDL-CHOL), triacylglycerol (TG) and phospholipid (PL) were generally higher in the rats fed on SEA and OLI than in those given SUN, LIS and SAR. The rats fed on OLI had a higher level of liver T-CHOL than those fed on the other fats. The liver TG content was nearly higher from the intake of SFA and OLI than from SUN, LIS and SAR, although the liver PL level was not affected by the type of dietary fat. The SFA and OLI groups had the highest activities of hepatic G6PDH and ACC, and the SAR group, the lowest activities. The activities of AST and CPT, and peroxisomal P βOX in the liver were higher in the rats fed on the LIS and SAR diets than in those given the other diets. The hepatic PAP activity was higher from the intake of OLI and SUN, and tended to be higher from SFA than from LIS and SAR. The activity of liver DGAT was higher from SFA and inclined to be higher from OLI, SUN, and LIS than from SAR, while the PCDGT activity in the liver was not effected by the type of dietary fat. The concentrations of plasma and liver TG were generally positively correlated with the activities of liver enzymes related to the synthesis of fatty acids and lipids, and negatively with those involved in fatty acid oxidation. Based on these results, it is suggested that the levels of plasma and liver TG were controlled by different types of dietary fat through changes in the hepatic enzyme activities related to fatty acid synthesis, lipogenesis, and fatty acid oxidation.     

阿维菌素对半闭弯尾姬蜂保护酶系和解毒酶系的影响

为明确阿维菌素对半闭弯尾姬蜂保护酶系和解毒酶系的影响,采用试管药膜法以阿维菌素亚致死浓度(LC10和LC25)处理半闭弯尾姬蜂成虫,分别于处理后1、12、24和48 h测定其体内保护酶和解毒酶活性变化。结果表明,阿维菌素亚致死浓度处理后,随着时间的延长,对寄生蜂体内超氧化物歧化酶(SOD)和过氧化物酶(POD)活性总体表现为诱导作用;对过氧化氢酶(CAT)活性表现为先抑制后诱导作用;对酯酶(EST)、谷胱甘肽S-转移酶(GST)和多功能氧化酶(MFO)具有显著的抑制作用。研究结果为深入了解半闭弯尾姬蜂对阿维菌素的防御机理提供了一定的理论基础。     

Anaerobic fungi and their cellulolytic and xylanolytic enzymes

Anaerobic fungi are the inhabitants of the digestive tract of herbivorous mammals, ruminants as well as non-ruminants. One of the major characteristics of all anaerobic fungi examined thus far, is their production and secretion of a range of polysaccharide-degrading enzymes, including cellulases, xylanases and glucoside-hydrolases. The cellulolytic enzymes of the anaerobic fungusNeocallimastix frontalis have been shown to possess a high activity. Therefore anaerobic fungi and/or their enzymes could be interesting for many biotechnological applications including saccharafication of lignocellulosic residues, production of polysacchari-dehydrolysing enzymes. This review summarizes the present knowledge of anaerobic fungi with special emphasis on their cellulolytic and xylanolytic enzymes. Further, a comparison with aerobic fungi is made.Abbreviations G₂ cellobiose - G₃ cellotriose - G₄ cellotetraose - G₅ cellopentaose - HMM-complex high molecular mass complex - PNPF p-nitrophenyl--fucopyranoside - PNPG p-nitrophenyl--glucopyranoside