Spatial genetic analysis of the grass snake,Natrix natrix (Squamata: Colubridae), in an intensively used agricultural landscape

Both the conversion of natural habitats to farmland and efforts at increasing the yield of existing crops contribute to a decline in biodiversity. As a consequence of land conversion, specialised species are restricted to remnants of original habitat patches, which are frequently isolated. This may lead to a genetic differentiation of the subpopulations. We used seven microsatellite markers to examine the genetic population structure of the grass snake, Natrix natrix (Linnaeus, 1758), sampled in remnants of pristine habitat embedded in an intensively used agricultural landscape in north‐western Switzerland. The study area, a former wetland, has been drained and gradually converted into an agricultural plain in the last century, reducing the pristine habitat to approximately 1% of the entire area. The grass snake feeds almost entirely on amphibians, and is therefore associated with wetlands. In Central Europe, the species shows severe decline, most probably as a result of wetland drainage and decrease of amphibian populations. We found no genetically distinct grass snake populations in the study area covering 90 km². This implies that there is an exchange of individuals between small remnants of original habitat. Thus, gene flow may prevent any genetic differentiation of subpopulations distributed over a relatively large area. Our results show that a specialized snake species can persist in an intensively used agricultural landscape, provided that suitable habitat patches are interconnected. © 2010 The Linnean Society of London, Biological Journal of the Linnean Society, 2010, 101 , 51–58.     

Misapplication of generic hazard-classification schemes for versatile,sustainable building materials: Copper as an example

Decisions regarding the use of building materials are being made based solely on the hazards of chemicals, without conducting risk assessments that account for realistic potential exposures and effects. We present copper as an example of a versatile, sustainable building material for which hazard classification has been misapplied. As a result, copper has been “blacklisted” for use as an exterior building material. However, its purported human health effects are not relevant for exposure to exterior building materials; furthermore, the potential environmental effects to aquatic life are not considered in appropriate contexts. We recommend evaluating risks of copper in runoff water at the point in temporal, chemical, and physical spaces at which organisms of concern will be exposed, instead of evaluating copper concentrations at the point of runoff from copper roofs, gutters, etc. Instead of banning a building material, appropriate institutional controls and/or best management practices should be required to control the release of related substances, if needed. In the absence of risk and/or life cycle assessments, architects and builders might choose regrettable substitutions in which materials posing unknown but potentially higher risks will replace more completely characterized materials that have lower risk in a given application.     

Interspecific and temporal variation of ant species within Acacia drepanolobium ant domatia, a staple food of patas monkeys (Erythrocebus patas) in Laikipia, Kenya

The ants that live in the swollen thorns (domatia) of Acacia drepanolobium are staple foods for patas monkeys (Erythrocebus patas). To obtain a better understanding of these insects as resources for patas monkeys, we sampled the contents of 1,051 swollen thorns (ant domatia) over a 22-month period from December 1999 to September 2001, in Laikipia, Kenya. First, we confirmed that of the four species of ants that live on A. drepanolobium, Crematogaster sjostedti, the competitively dominant ant in this system, does not rear significant brood in the swollen thorns and is therefore not a major food item of patas monkeys. Second, across the other three species that do use swollen thorns for rearing their brood, C. nigriceps, C. mimosae, and Tetraponera penzigi, the number of worker ants per swollen thorn increased with increasing competitive dominance. Third, although there was considerable month-to-month variation in the number of workers, immatures, and especially alates (winged reproductives) within species, there was less variation across species because ant production was asynchronous. Variation in domatia contents was poorly related to rainfall for each of the three species. Finally, distal thorns held more alates and fewer workers than interior thorns, and branches higher off the ground held more alates and more workers than lower branches. For the numerically dominant C. mimosae, higher branches held significantly more immature ants than did lower branches. Ants are reliable food resources for patas monkeys, and are probably more reliable than many plant resources in this highly seasonal environment. We estimate that patas monkeys may get as much as a third of their daily caloric needs from these ants year-round. As ants and other insects are widely consumed by primates, we suggest that greater consideration be given to species differences in animal food choices and that further studies be conducted to examine the degree to which ants influence energy intake and reproduction in other primates.     

Cymbonotus (Compositae: Arctotideae, Arctotidinae): an endemic Australian genus embedded in a southern African clade

The Compositae (Asteraceae) is the largest flowering plant family if described, accepted taxa are considered. Recent revisions in the taxonomy of the family have resulted in the recognition of ten subfamilies and 35 tribes. The tribe Arctotideae is one of the smallest, with around 200 species; it contains two subtribes and several hard-to-place taxa. Previous work has shown that the subtribe Arctotidinae is well defined and is restricted to southern Africa, except for the Australian genus Cymbonotus . Molecular data from internal transcribed spacer (ITS), ndh F, and trn L-F sequences were used (24 previously published sequences; 47 new sequences) to determine the patterns of relationships within the subtribe. Twenty-three samples from the ingroup, including members of all genera and all three species of Cymbonotus , were included in the analysis, together with two outgroup taxa. Cymbonotus is monophyletic and deeply embedded in the subtribe; Haplocarpha is paraphyletic and basal in position; all other genera are monophyletic; however, Arctotis has over 60 species and only eight were sampled for this study, so additional work may prove otherwise. Arctotis is nested high in the tree and has short branch lengths; this may reflect recent radiation. By contrast, the species of the paraphyletic and basal Haplocarpha have long branches, which may indicate an older radiation and a shared ancestry with the remainder of the subtribe. The presence of Cymbonotus in Australia is most probably the result of long-distance dispersal.  Journal compilation © 2007 The Linnean Society of London, Botanical Journal of the Linnean Society , 2007, 153 , 1–8. No claim to original US government works     

Efficient production of polyhydroxyalkanoates (PHAs) from Pseudomonas mendocina PSU using a biodiesel liquid waste (BLW) as the sole carbon source

Conditions for the optimal production of polyhydroxyalkanoate (PHA) by Pseudomonas mendocina PSU using a biodiesel liquid waste (BLW) were determined by response surface methodology. These were an initial carbon to nitrogen ratio (C/N) of 40 (mole/mole), an initial pH of 7.0, and a temperature of 35 °C. A biomass and PHA concentration of 3.65 g/L and about 2.6 g/L (77% DCW), respectively, were achieved in a growth associated process using 20 g/L glycerol in the BLW after 36 h of exponential growth. The PHA monomer compositions were 3HB (3-hydroxybutyrate), a short-chain-length-PHA, and the medium-chain-length-PHA e.g. 3-hydroxyoctanoate and 3-hydroxydecanoate. Both the phbC and phaC genes were characterized. The phbC enzyme had not been previously detected in a Pseudomonas mendocina species. A 2.15 g/L of an exopolysaccharide, alginate, was also produced with a similar composition to that of other Pseudomonas species.     

Genetic diversity and conservation of Ipomoea microdactyla (Convolvulaceae): an endemic vine from the Bahamas,Cuba, and southeastern Florida

Ipomoea microdactyla Griseb. (Convolvulaceae) is restricted to the Bahamian archipelago, Cuba, and southeastern Florida. The species is listed as a state endangered species in Florida, where it is mostly restricted to the hyperfragmented pine rockland of Miami‐Dade County. Using seven DNA microsatellite loci, we assessed levels of genetic diversity for 12 populations of this species from Andros Island in the Bahamas (six sites), Cuba (one site), and Florida (five sites). We found significantly greater mean numbers of alleles, and higher mean values for both observed and expected heterozygosity in populations from the continuous forest on Andros than those from the habitat fragments in Florida. It is unknown if these patterns of genetic diversity in the Florida populations are the result of habitat fragmentation or founder effects. The population from Cuba exhibited relatively high levels of genetic variation, suggesting that this island is a major center of diversity and dispersal for this species. It appears that hybrid introgression for I. carolina alleles within I. microdactyla individuals occurred at a single site on Andros Island. Overall, the mean inbreeding coefficient value was 0.089, suggesting low levels of inbreeding. The highest inbreeding coefficient values were mostly recorded in Florida. Two groups were revealed, one containing the populations from Florida, and the second one encompassing those from the Bahamas and Cuba. Our results highlight the negative genetic consequences of habitat fragmentation and support initiatives recently established to establish corridors to connect the remnants of the pine forest of the Miami‐Dade County.     

A biological assessment of Apophua simplicipes (Hymenoptera: Ichneumonidae) as a parasitoid of the oblique banded leafroller, Choristoneura rosaceana (Lepidoptera: Tortricidae)

Apophua simplicipes (Cresson) (Hymenoptera: Ichneumonidae) is a common parasitoid of the oblique banded leafroller, Choristoneura rosaceana (Harris) (Lepidoptera: Tortricidae) in organically managed apple orchards in the southern interior of British Columbia, Canada. The biological characteristics of a laboratory colony of A. simplicipes were studied. When held at 15 and 25°C and provided with honey water, individual females survived an average of 60.6±6.1 and 29.8±4.7 days, oviposited 196.7±50.7 and 326.6±51.3 eggs and parasitized a total of 163.4±40.4 and 229.4±35.8 hosts, respectively. Females oviposited into first through fourth instar oblique banded leafrollers, with significantly more parasitism occurring in the first two instars compared to the third and fourth instars. No parasitoid larvae survived past the first larval stage in parasitized fourth instar hosts. Apophua simplicipes did not parasitize larvae of three-lined leafroller, Pandemis limitata (Robinson) (Lepidoptera: Tortricidae) which is sympatric with oblique banded leafrollers in orchards in the southern interior of British Columbia. Female predation and host feeding from wounds on early instars of both leafroller species was observed under laboratory conditions. In addition, early instar hosts exited diet feeding sites in response to the probing activity of the ovipositing wasps. A similar escape reaction in the orchard may cause a leafroller larva to move away from its feeding site, making it more vulnerable to predation or movement off the tree. Apophua simplicipes larvae emerged from fifth and sixth instar hosts. Parasitized oblique banded leafroller hosts consumed significantly less meridic diet than unparasitized female larvae from fifth instar through to parasitoid emergence or leafroller pupation. Our laboratory results suggest that A. simplicipes may reduce field populations of oblique banded leafroller and decrease pest feeding damage.     

Ecophysiological basis of the Jack-and-Master strategy: Taraxacum officinale (dandelion) as an example of a successful invader

Aims Successful invasive plants are often assumed to display significant levels of phenotypic plasticity. Three possible strategies by which phenotypic plasticity may allow invasive plant species to thrive in changing environments have been suggested: (i) via plasticity in morphological or physiological traits, invasive plants are able to maintain a higher fitness than native plants in a range of environments, including stressful or low-resource habitats: a 'Jack-of-all-trades' strategy; (ii) phenotypic plasticity allows the invader to better exploit resources available in low stress or favorable habitats, showing higher fitness than native ones: a 'Master-of-some' strategy and (iii) a combination of these abilities, the 'Jack-and-Master' strategy.Methods We evaluated these strategies in the successful invader Taraxacum officinale in a controlled experiment mimicking natural environmental gradients. We set up three environmental gradients consisting of factorial arrays of two levels of temperature/light, temperature/water and light/water, respectively. We compared several ecophysiological traits, as well as the reaction norm in fitness-related traits, in both T. officinale and the closely related native Hypochaeris thrincioides subjected to these environmental scenarios.Important findings Overall, T. officinale showed significantly greater accumulation of biomass and higher survival than the native H. thrincioides, with this difference being more pronounced toward both ends of each gradient. T. officinale also showed significantly higher plasticity than its native counterpart in several ecophysiological traits. Therefore, T. officinale exhibits a Jack-and-Master strategy as it is able to maintain higher biomass and survival in unfavorable conditions, as well as to increase fitness when conditions are favorable. We suggest that this strategy is partly based on ecophysiological responses to the environment, and that it may contribute to explaining the successful invasion of T. officinale across different habitats.     

On the limnology of Lake Baringo (Kenya): II. Pelagic primary production and algal composition of Lake Baringo,Kenya

Sicilian reservoirs, a vital resource for this densely populated island, are undergoing increased eutrophication processes, due to the lack of urban waste treatment plants and to intense agriculture. Massive blooms of toxic cyanobacteria represent one of the most obvious consequences, and can be dangerous for population health. The possibility of a fast, even if only short term, recovery of water quality through application of lime, was tested through analysis of ion dynamics in two reservoirs, to develop an `emergency plan', to counteract cyanobacterial blooms and to decrease the risk for human health. The results indicate that these water bodies are suitable for lime treatments, even though the high content of sulphate and their managed hydrological cycles, have to be considered.     

Airborne fungi as indicators of ecosystem disturbance: an example from selected Tatra Mountains caves (Poland)

We report on the determination of the spore concentration and the species composition of the airborne fungi in selected caves of the Tatra Mountains, Poland. The following caves were surveyed: Mylna, Ob?azkowa, Mro?na, Zimna and Naciekowa. The sampling was carried out in July 2015 and in January 2016. The aeromycological analyses were performed with the impact method, using the Air Ideal 3P apparatus and potato dextrose agar (PDA, Biocorp) culture medium. In the course of the July 2015 analysis, 17 species of fungi were isolated and 11 species were isolated in January 2016. In Mylna and Naciekowa caves, the dominant species were Cladosporium cladosporioides and Stachybotrys cylindrospora. In Ob?azkowa cave, Rhizoctonia predominated and in Zimna cave—the colonies of the yeast-like fungi, along with S. cylindrospora. In Mro?na cave, Penicillium notatum was the most abundant taxon. In the winter time, in the majority of the caves Penicillium spp. predominated, with the exception of Mro?na and Naciekowa caves where Aspergillus niger was dominant. We propose that aeromycological monitoring be performed regularly in the following caves: Mro?na, Naciekowa and Zimna.     

Origins of polyploids: an example from peonies (Paeonia) and a model for angiosperms

The majority of tetraploid peonies are allopolyploids derived from crosses between phylogenetically distinct diploid lineages. Tetraploid Paeonia obovata was previously considered to be an autopolyploid because it is morphologically indistinguishable from the diploid of the same species. The presence of the Adh2 gene in tetraploid P. obovata but the inability to amplify the Adh2 gene from Chinese diploids of P. obovata, however, suggests that the tetraploid was not an autotetraploid derivative of the geographically adjacent diploid populations in China. The Adh gene phylogenies rather suggest that the tetraploid originated from crosses between two geographical races of diploid P. obovata distributed in China and Japan. The intermediate status of tetraploid P. obovata between auto‐ and allopolyploidy highlights the need for population genetic analyses of polyploid origins along the continuous range of genomic divergence. Here we present a model that describes the probabilities of polyploid formation and establishment as a function of genomic divergence between diploid progenitors. The probability of polyploid formation (P_f) is obtained from the multiplication of the probability of production of unreduced gametes (P_g) and the probability of ‘hybridization’ (P_h). P_f stays relatively stable when the genomic divergence is low, and then decreases progressively rapidly with the increase of genomic divergence between diploid progenitors. The probability of polyploid establishment (P_e), which depends on the rate of appearance of stable beneficial gene combinations and the rate of fertility restoration, is positively correlated with the genomic divergence of diploid parents. Multiplication of P_f and P_e gives an overall probability of polyploid origins (P_o) that varies continuously along the genomic divergence between diploid progenitors. © 2004 The Linnean Society of London, Biological Journal of the Linnean Society, 2004, 82 , 561–571.     

DNA barcoding of Arctic bryophytes: an example from the moss genus Dicranum (Dicranaceae,Bryophyta)

The identification of bryophytes from the Arctic is often difficult due to deviating morphologies under the extreme environmental conditions. This is especially true for species-rich and taxonomically complex genera, such as the moss genus Dicranum. DNA barcoding is expected to improve the identification of Arctic bryophyte species, but the optimal combination of barcoding markers for mosses in general, especially for delimiting closely related, is still under discussion. In this paper, we test the discrimination capacity of six potential barcode markers (rps4-trnT _UGU, trnL _UAA-trnF _GAA, trnH _GUG-psbA, rps19-rpl2, rpoB, and nrITS1-5.8S-ITS2) based on phylogenetic reconstructions of 30 Dicranum samples from Spitsbergen (Svalbard, Norway), and reference samples from all ten Dicranum species confirmed for the Svalbard archipelago and six additional Arctic Dicranum species. All 16 species (possibly except D. fuscescens) were distinguishable with bootstrap support >70 % based on the combined sequence data, but none of the individual markers could delimit all included species. All Svalbard collections could be readily assigned to five species, D. acutifolium, D. elongatum, D. laevidens, D. majus, and D. spadiceum, respectively. It is concluded that DNA barcoding improves species identification of Arctic Dicranum plants, but that a combination of several markers is necessary in order to obtain reliable identification results, with the single loci ITS1, trnL-F and rps4-trnT being the most promising regions.     

Osmunda (Osmundaceae) from the Triassic of Antarctica: an example of evolutionary stasis

Compressed specimens of the fern Osmunda are described from the Triassic of the Allan Hills, Antarctica. The specimens consist of a once pinnate, deeply pinnatifid fertile frond as well as several sterile specimens. Six pinnae are present on the partial fertile rachis, with two sterile pinnae above four fertile pinnae. Both sterile and fertile specimens are virtually identical to the modern species Osmunda claytoniana. Entire fronds are fragmentary; the longest is 21 cm in length. Sterile pinnae are alternate and deeply pinnatifid, with slightly toothed pinnules and dichotomous venation. Fertile pinnae are 1-1.3 cm long, once pinnate, and lack vegetative lamina. Sporangia are clustered, each 300-375 um in diameter, and possess a transverse annulus 6-8 cells long; dehiscence is by a vertical slit. Fronds arise from a rhizome 4 cm long by 1 cm wide; two croziers are present on the rhizome. Two frond segments up to 6 cm long and three deeply pinnatifid pinnae are present on the uppermost part of one rachis. Pinnules are ~4 mm long and 2-3 mm wide. The presence of this Osmunda species in the Triassic demonstrates stasis of frond morphology, both fertile and vegetative, for the genus.     

Assessing the status of the marsh fritillary butterfly (Eurodryas aurinia): an example from Glamorgan, UK

We surveyed populations of Eurodryas aurinia (a butterfly listed as Threatened in Europe) in Glamorgan (South Wales, UK). The survey may provide a model for similar work, which is urgently needed throughout the species' European range. For each colony, we established population size, vegetation types, and current management regimes. Populations were assessed using larval surveys, a method which has several advantages over conventional adult surveys. With approximately 35 local populations, Glamorgan is among the most important areas for E. aurinia in the UK, and is of importance in a European context. However, 15 local populations were under immediate threat from unfavourable management or industrial developments, and only seven populations were on Sites of Special Scientific Interest. Colonies showed a clustered pattern, and varied greatly in size: 50% supported 20 or fewer larval webs. Many of the small populations may be temporary offshoots of larger, more permanent populations nearby. The largest local populations occupied Molinia caerulea - Cirsium dissectum fen meadow habitats (National Vegetation Community M24), which were unmanaged, grazed by cattle, horses or ponies, or subject to periodic burning. Detailed local surveys such as this one, which assess the relative sizes of populations and the impact of current management practices, may be the best way to plan future conservation measures for E. aurinia.