A genomic reservoir for Tnfrsf genes is developmentally regulated and imprinted in the mouse

Tumor necrosis factor receptor superfamily is composed of at least 26 members in the mouse, three of which exist as a cluster within the imprinted Kcnq1 domain on chromosome 7. Tnfrsf22, 23 and 26 contain typical cystein-rich domains and Tnfrsf22 and 23 can bind ligands but have no signaling capacity. Thus, they are assumed to be decoy receptors. The developmental expression profile of these genes is unknown and knowledge of their imprinting patterns is incomplete and controversial. We found that all three genes are expressed during mouse embryonic development, and that they have a strong maternal bias, indicating that they may be affected by the KvDMR, the Kcnq1 imprinting control region. We found expression of an antisense non-coding RNA, AK155734, in embryos and some neonatal tissues. This RNA overlaps the Tnfrsf22 and possibly the Tnfrsf23 coding regions and is also expressed with a maternal bias. We were interested in exploring the evolutionary origins of the three Tnfrsf genes, because they are absent in the orthologous human Kcnq1 domain. To determine whether the genes were deleted from humans or acquired in the rodent lineage, we performed phylogenetic analyses. Our data suggest that TNFRSF sequences were duplicated and/or degenerated or eliminated from the KCNQ1 region several times during the evolution of mammals. In humans, multiple mutations (point mutations and/or deletions) have accumulated on the ancestral TNFRSF, leaving a single short non-functional sequence.     

LncRNA‐AK137033 inhibits the osteogenic potential of adipose‐derived stem cells in diabetic osteoporosis by regulating Wnt signaling pathway via DNA methylation

ObjectivesBone tissue engineering based on adipose‐derived stem cells (ASCs) is expected to become a new treatment for diabetic osteoporosis (DOP) patients with bone defects. However, compared with control ASCs (CON‐ASCs), osteogenic potential of DOP‐ASCs is decreased, which increased the difficulty of bone reconstruction in DOP patients. Moreover, the cause of the poor osteogenesis of ASCs in a hyperglycemic microenvironment has not been elucidated. Therefore, this study explored the molecular mechanism of the decline in the osteogenic potential of DOP‐ASCs from the perspective of epigenetics to provide a possible therapeutic target for bone repair in DOP patients with bone defects.Materials and methodsAn animal model of DOP was established in mice. CON‐ASCs and DOP‐ASCs were isolated from CON and DOP mice, respectively. {"type":"entrez-nucleotide","attrs":{"text":"AK137033","term_id":"74205820","term_text":"AK137033"}}AK137033 small interfering RNA (SiRNA) and an {"type":"entrez-nucleotide","attrs":{"text":"AK137033","term_id":"74205820","term_text":"AK137033"}}AK137033 overexpression plasmid were used to regulate the expression of {"type":"entrez-nucleotide","attrs":{"text":"AK137033","term_id":"74205820","term_text":"AK137033"}}AK137033 in CON‐ASCs and DOP‐ASCs in vitro. Lentiviruses that carried shRNA‐{"type":"entrez-nucleotide","attrs":{"text":"AK137033","term_id":"74205820","term_text":"AK137033"}}AK137033 or {"type":"entrez-nucleotide","attrs":{"text":"AK137033","term_id":"74205820","term_text":"AK137033"}}AK137033 cDNA were used to knockdown or overexpress {"type":"entrez-nucleotide","attrs":{"text":"AK137033","term_id":"74205820","term_text":"AK137033"}}AK137033, respectively, in CON‐ASCs and DOP‐ASCs in vivo. Hematoxylin and eosin (H&E), Masson''s, alizarin red, and alkaline phosphatase (ALP) staining, micro‐computed tomography (Micro‐CT), flow cytometry, qPCR, western blotting, immunofluorescence, and bisulfite‐specific PCR (BSP) were used to analyze the functional changes of ASCs.ResultsThe DOP mouse model was established successfully. Compared with CON‐ASCs, {"type":"entrez-nucleotide","attrs":{"text":"AK137033","term_id":"74205820","term_text":"AK137033"}}AK137033 expression, the DNA methylation level of the sFrp2 promoter region, Wnt signaling pathway markers, and the osteogenic differentiation potential were decreased in DOP‐ASCs. In vitro experiments showed that {"type":"entrez-nucleotide","attrs":{"text":"AK137033","term_id":"74205820","term_text":"AK137033"}}AK137033 silencing inhibited the Wnt signaling pathway and osteogenic ability of CON‐ASCs by reducing the DNA methylation level in the sFrp2 promoter region. Additionally, overexpression of {"type":"entrez-nucleotide","attrs":{"text":"AK137033","term_id":"74205820","term_text":"AK137033"}}AK137033 in DOP‐ASCs rescued these changes caused by DOP. Moreover, the same results were obtained in vivo.ConclusionsLncRNA‐{"type":"entrez-nucleotide","attrs":{"text":"AK137033","term_id":"74205820","term_text":"AK137033"}}AK137033 inhibits the osteogenic potential of DOP‐ASCs by regulating the Wnt signaling pathway via modulating the DNA methylation level in the sFrp2 promoter region. This study provides an important reference to find new targets for the treatment of bone defects in DOP patients.     

Aberrantly Expressed lncRNAs in Primary Varicose Great Saphenous Veins

Long non-coding RNAs (lncRNAs) are key regulatory molecules involved in a variety of biological processes and human diseases. However, the pathological effects of lncRNAs on primary varicose great saphenous veins (GSVs) remain unclear. The purpose of the present study was to identify aberrantly expressed lncRNAs involved in the prevalence of GSV varicosities and predict their potential functions. Using microarray with 33,045 lncRNA and 30,215 mRNA probes, 557 lncRNAs and 980 mRNAs that differed significantly in expression between the varicose great saphenous veins and control veins were identified in six pairs of samples. These lncRNAs were sub-grouped and mRNAs expressed at different levels were clustered into several pathways with six focused on metabolic pathways. Quantitative real-time PCR replication of nine lncRNAs was performed in 32 subjects, validating six lncRNAs ({"type":"entrez-nucleotide","attrs":{"text":"AF119885","term_id":"7770206","term_text":"AF119885"}}AF119885, {"type":"entrez-nucleotide","attrs":{"text":"AK021444","term_id":"10432630","term_text":"AK021444"}}AK021444, {"type":"entrez-nucleotide","attrs":{"text":"NR_027830","term_id":"240255595","term_text":"NR_027830"}}NR_027830, {"type":"entrez-nucleotide","attrs":{"text":"G36810","term_id":"2734477","term_text":"G36810"}}G36810, {"type":"entrez-nucleotide","attrs":{"text":"NR_027927","term_id":"242246950","term_text":"NR_027927"}}NR_027927, uc.345-). A coding-non-coding gene co-expression network revealed that four of these six lncRNAs may be correlated with 11 mRNAs and pathway analysis revealed that they may be correlated with another 8 mRNAs associated with metabolic pathways. In conclusion, aberrantly expressed lncRNAs for GSV varicosities were here systematically screened and validated and their functions were predicted. These findings provide novel insight into the physiology of lncRNAs and the pathogenesis of varicose veins for further investigation. These aberrantly expressed lncRNAs may serve as new therapeutic targets for varicose veins. The Human Ethnics Committee of Shanghai East Hospital, Tongji University School of Medicine approved the study (NO.: 2011-DF-53).     

Regulation of Inflorescence Branch Development in Rice Through a Novel Pathway Involving the Pentatricopeptide Repeat Protein sped1-D

Panicle type has a direct bearing on rice yield. Here, we characterized a rice clustered-spikelet mutant, sped1-D, with shortened pedicels and/or secondary branches, which exhibits decreased pollen fertility. We cloned sped1-D and found that it encodes a pentatricopeptide repeat protein. We investigated the global expression profiles of wild-type, 9311, and sped1-D plants using Illumina RNA sequencing. The expression of several GID1L2 family members was downregulated in the sped1-D mutant, suggesting that the gibberellin (GA) pathway is involved in the elongation of pedicels and/or secondary branches. When we overexpressed one GID1L2, {"type":"entrez-nucleotide","attrs":{"text":"AK070299","term_id":"32980323","term_text":"AK070299"}}AK070299, in sped1-D plants, the panicle phenotype was restored to varying degrees. In addition, we analyzed the expression of genes that function in floral meristems and found that RFL and WOX3 were severely downregulated in sped1-D. These results suggest that sped1-D may prompt the shortening of pedicels and secondary branches by blocking the action of GID1L2, RFL, and Wox3. Moreover, overexpression of sped1-D in Arabidopsis resulted in the shortening of pedicels and clusters of siliques, which indicates that the function of sped1-D is highly conserved in monocotyledonous and dicotyledonous plants.     

High Prevalence and Significant Association of ESBL and QNR Genes in Pathogenic Klebsiella pneumoniae Isolates of Patients from Kolkata, India

Pathogenic Klebsiella pneumoniae, resistant to beta-lactam and quinolone drugs, is widely recognized as important bacteria causing array of diseases. The resistance property is obtained by acquisition of plasmid encoded bla_TEM, bla_SHV, bla_CTX-M, QNRA, QNRB and QNRS genes. The aim of this study was to document the prevalence and association of these resistant genes in K. pneumoniae infecting patients in India. Approximately 97 and 76.7 % of the 73 K. pneumoniae isolates showed resistance towards beta-lactam and quinolone drugs respectively. Bla genes were detected in 74 % of K. pneumoniae isolates; with prevalence in the following order: bla_TEM > bla_SHV > bla_CTXM. QNR genes were detected in 67 % samples. Chi-square analysis revealed significant association between presence of bla and qnr genes in our study (P value = 0.000125). Sequence analysis of some bla_TEM, bla_SHV, bla_CTX-M and QNRB PCR products revealed presence of bla_TEM1 (GenBank accession: {"type":"entrez-nucleotide","attrs":{"text":"JN193522","term_id":"343796760","term_text":"JN193522"}}JN193522), bla_TEM116 ({"type":"entrez-nucleotide","attrs":{"text":"JN193523","term_id":"343796762","term_text":"JN193523"}}JN193523 and {"type":"entrez-nucleotide","attrs":{"text":"JN193524","term_id":"343796764","term_text":"JN193524"}}JN193524), bla_SHV11, bla_CTXM72 variants ({"type":"entrez-nucleotide","attrs":{"text":"JF523199","term_id":"329024835","term_text":"JF523199"}}JF523199) and QNRB1 ({"type":"entrez-nucleotide","attrs":{"text":"JN193526","term_id":"343796802","term_text":"JN193526"}}JN193526 and {"type":"entrez-nucleotide","attrs":{"text":"JN193527","term_id":"343796804","term_text":"JN193527"}}JN193527) in our samples.     

Comparative High-Resolution Mapping of the Wax Inhibitors Iw1 and Iw2 in Hexaploid Wheat

The wax (glaucousness) on wheat leaves and stems is mainly controlled by two sets of genes: glaucousness loci (W1 and W2) and non-glaucousness loci (Iw1 and Iw2). The non-glaucousness (Iw) loci act as inhibitors of the glaucousness loci (W). High-resolution comparative genetic linkage maps of the wax inhibitors Iw1 originating from Triticum dicoccoides, and Iw2 from Aegilops tauschii were developed by comparative genomics analyses of Brachypodium, sorghum and rice genomic sequences corresponding to the syntenic regions of the Iw loci in wheat. Eleven Iw1 and eight Iw2 linked EST markers were developed and mapped to linkage maps on the distal regions of chromosomes 2BS and 2DS, respectively. The Iw1 locus mapped within a 0.96 cM interval flanked by the {"type":"entrez-nucleotide","attrs":{"text":"BE498358","term_id":"9696891","term_text":"BE498358"}}BE498358 and {"type":"entrez-nucleotide","attrs":{"text":"CA499581","term_id":"24990541","term_text":"CA499581"}}CA499581 EST markers that are collinear with 122 kb, 202 kb, and 466 kb genomic regions in the Brachypodium 5S chromosome, the sorghum 6S chromosome and the rice 4S chromosome, respectively. The Iw2 locus was located in a 4.1 to 5.4-cM interval in chromosome 2DS that is flanked by the {"type":"entrez-nucleotide","attrs":{"text":"CJ886319","term_id":"143584862","term_text":"CJ886319"}}CJ886319 and {"type":"entrez-nucleotide","attrs":{"text":"CJ519831","term_id":"93083902","term_text":"CJ519831"}}CJ519831 EST markers, and this region is collinear with a 2.3 cM region spanning the Iw1 locus on chromosome 2BS. Both Iw1 and Iw2 co-segregated with the {"type":"entrez-nucleotide","attrs":{"text":"BF474014","term_id":"11543196","term_text":"BF474014"}}BF474014 and {"type":"entrez-nucleotide","attrs":{"text":"CJ876545","term_id":"143556664","term_text":"CJ876545"}}CJ876545 EST markers, indicating they are most likely orthologs on 2BS and 2DS. These high-resolution maps can serve as a framework for chromosome landing, physical mapping and map-based cloning of the wax inhibitors in wheat.     

Targeting non-coding RNAs with the CRISPR/Cas9 system in human cell lines

The CRISPR/Cas has been recently shown to be a powerful genome-editing tool in a variety of organisms. However, these studies are mainly focused on protein-coding genes. The present study aims to determine whether this technology can be applied to non-coding genes. One of the challenges for knockout of non-coding genes is that a small deletion or insertion generated by the standard CRISPR/Cas system may not necessarily lead to functional loss of a given non-coding gene because of lacking an open reading frame, especially in polyploidy human cell lines. To overcome this challenge, we adopt a selection system that allows for marker genes to integrate into the genome through homologous recombination (HR). Moreover, we construct a dual guide RNA vector that can make two cuts simultaneously at designated sites such that a large fragment can be deleted. With these approaches, we are able to successfully generate knockouts for miR-21, miR-29a, lncRNA-21A, UCA1 and {"type":"entrez-nucleotide","attrs":{"text":"AK023948","term_id":"10436045","term_text":"AK023948"}}AK023948 in various human cell lines. Finally, we show that the HR-mediated targeting efficiency can be further improved by suppression of the non-homologous end joining pathway. Together, these results demonstrate the feasibility of knockout for non-coding genes by the CRISPR/Cas system in human cell lines.     

Genetic Characterization of Clinical Acanthamoeba Isolates from Japan using Nuclear and Mitochondrial Small Subunit Ribosomal RNA

Because of an increased number of Acanthamoeba keratitis (AK) along with associated disease burdens, medical professionals have become more aware of this pathogen in recent years. In this study, by analyzing both the nuclear 18S small subunit ribosomal RNA (18S rRNA) and mitochondrial 16S rRNA gene loci, 27 clinical Acanthamoeba strains that caused AK in Japan were classified into 3 genotypes, T3 (3 strains), T4 (23 strains), and T5 (one strain). Most haplotypes were identical to the reference haplotypes reported from all over the world, and thus no specificity of the haplotype distribution in Japan was found. The T4 sub-genotype analysis using the 16S rRNA gene locus also revealed a clear sub-conformation within the T4 cluster, and lead to the recognition of a new sub-genotype T4i, in addition to the previously reported sub-genotypes T4a-T4h. Furthermore, 9 out of 23 strains in the T4 genotype were identified to a specific haplotype ({"type":"entrez-nucleotide","attrs":{"text":"AF479533","term_id":"28194589","term_text":"AF479533"}}AF479533), which seems to be a causal haplotype of AK. While heterozygous nuclear haplotypes were observed from 2 strains, the mitochondrial haplotypes were homozygous as T4 genotype in the both strains, and suggested a possibility of nuclear hybridization (mating reproduction) between different strains in Acanthamoeba. The nuclear 18S rRNA gene and mitochondrial 16S rRNA gene loci of Acanthamoeba spp. possess different unique characteristics usable for the genotyping analyses, and those specific features could contribute to the establishment of molecular taxonomy for the species complex of Acanthamoeba.     

Comparative Screening of Digestion Tract Toxic Genes in Proteus mirabilis

Proteus mirabilis is a common urinary tract pathogen, and may induce various inflammation symptoms. Its notorious ability to resist multiple antibiotics and to form urinary tract stones makes its treatment a long and painful process, which is further challenged by the frequent horizontal gene transferring events in P. mirabilis genomes. Three strains of P. mirabilis {"type":"entrez-nucleotide","attrs":{"text":"C02011","term_id":"1434241"}}C02011/{"type":"entrez-nucleotide","attrs":{"text":"C04010","term_id":"1467261"}}C04010/C04013 were isolated from a local outbreak of a food poisoning event in Shenzhen, China. Our hypothesis is that new genes may have been acquired horizontally to exert the digestion tract infection and toxicity. The functional characterization of these three genomes shows that each of them independently acquired dozens of virulent genes horizontally from the other microbial genomes. The representative strain {"type":"entrez-nucleotide","attrs":{"text":"C02011","term_id":"1434241"}}C02011 induces the symptoms of both vomit and diarrhea, and has recently acquired a complete type IV secretion system and digestion tract toxic genes from the other bacteria.     

Novel Variant Serotype of Streptococcus suis Isolated from Piglets with Meningitis

Streptococcus suis is an emerging zoonotic pathogen causing severe infections in pigs and humans. In previous studies, 33 serotypes of S. suis have been identified using serum agglutination. Here, we describe a novel S. suis strain, {"type":"entrez-nucleotide","attrs":{"text":"CZ130302","term_id":"57728550","term_text":"CZ130302"}}CZ130302, isolated from an outbreak of acute piglet meningitis in eastern China. Strong pathogenicity of meningitis caused by strain {"type":"entrez-nucleotide","attrs":{"text":"CZ130302","term_id":"57728550","term_text":"CZ130302"}}CZ130302 was reproduced in the BALB/c mouse model. The strain showed a high fatality rate (8/10), higher than those for known virulent serotype 2 strains P1/7 (1/10) and 9801 (2/10). Cell adhesion assay results with bEnd.3 and HEp2 cells showed that {"type":"entrez-nucleotide","attrs":{"text":"CZ130302","term_id":"57728550","term_text":"CZ130302"}}CZ130302 was significantly close to P1/7 and 9801. Both the agglutination test and its complementary test showed that strain {"type":"entrez-nucleotide","attrs":{"text":"CZ130302","term_id":"57728550","term_text":"CZ130302"}}CZ130302 had no strong cross-reaction with the other 33 S. suis serotypes. The multiplex PCR assays revealed no specified bands for all four sets used to detect the other 33 serotypes. In addition, genetic analysis of the whole cps gene clusters of all serotypes was performed in this study. The results of comparative genomics showed that the cps gene cluster of {"type":"entrez-nucleotide","attrs":{"text":"CZ130302","term_id":"57728550","term_text":"CZ130302"}}CZ130302, which was not previously reported, showed no homology to the gene sequences of the other strains. Especially, the wzy, wzx, and acetyltransferase genes of strain {"type":"entrez-nucleotide","attrs":{"text":"CZ130302","term_id":"57728550","term_text":"CZ130302"}}CZ130302 are phylogenetically distinct from strains of the other 33 serotypes. Therefore, this study suggested that strain {"type":"entrez-nucleotide","attrs":{"text":"CZ130302","term_id":"57728550","term_text":"CZ130302"}}CZ130302 represents a novel variant serotype of S. suis (designated serotype Chz) which has a high potential to be virulent and associated with meningitis in animals.     

Genome sequences published outside of Standards in Genomic Sciences, January-March 2012

The purpose of this table is to provide the community with a citable record of publications of ongoing genome sequencing projects that have led to a publication in the scientific literature. While our goal is to make the list complete, there is no guarantee that we may have omitted one or more publications appearing in this time frame. Readers and authors who wish to have publications added to subsequent versions of this list are invited to provide the bibliographic data for such references to the SIGS editorial office.

Phylum Crenarchaeota

• Pyrobaculum strain 1860, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP003098","term_id":"356640791","term_text":"CP003098"}}CP003098 [1]

Phylum Deinococcus-Thermus

• “Thermus sp.” Strain CCB_US3_UF1, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP003126","term_id":"359289533","term_text":"CP003126"}}CP003126 (chromosome), {"type":"entrez-nucleotide","attrs":{"text":"CP003127","term_id":"359291781","term_text":"CP003127"}}CP003127 (plasmid) [2]

Phylum Proteobacteria

• “Achromobacter arsenitoxydans” SY8, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AGUF00000000","term_id":"359366799","term_text":"AGUF00000000"}}AGUF00000000 [3]
• Acidovorax sp. Strain NO1, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AGTS00000000","term_id":"363417938","term_text":"AGTS00000000"}}AGTS00000000 [4]
• Acinetobacter baumannii AB4857, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AHAG00000000","term_id":"371492156","term_text":"AHAG00000000"}}AHAG00000000 [5]
• Acinetobacter baumannii AB5075, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AHAH00000000","term_id":"371492114","term_text":"AHAH00000000"}}AHAH00000000 [5]
• Acinetobacter baumannii AB5256, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AHAI00000000","term_id":"371492153","term_text":"AHAI00000000"}}AHAI00000000 [5]
• Acinetobacter baumannii AB5711, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AHAJ00000000","term_id":"371492197","term_text":"AHAJ00000000"}}AHAJ00000000 [5]
• Aeromonas salmonicida, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AGVO00000000","term_id":"356689990","term_text":"AGVO00000000"}}AGVO00000000 [6]
• Aggregatibacter actinomycetemcomitans RHAA1, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AHGR00000000","term_id":"359757447","term_text":"AHGR00000000"}}AHGR00000000 [7]
• Agrobacterium tumefaciens 5A, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AGVZ00000000","term_id":"358008163","term_text":"AGVZ00000000"}}AGVZ00000000 [8]
• Azoarcus sp. Strain KH32C, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AP012304","term_id":"358635055","term_text":"AP012304"}}AP012304, {"type":"entrez-nucleotide","attrs":{"text":"AP012305","term_id":"358639587","term_text":"AP012305"}}AP012305 [9]
• Burkholderia sp. Strain YI23, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP003087","term_id":"357934279","term_text":"CP003087"}}CP003087 (Chromosome 1), {"type":"entrez-nucleotide","attrs":{"text":"CP003088","term_id":"357937049","term_text":"CP003088"}}CP003088 (Chromosome 2), {"type":"entrez-nucleotide","attrs":{"text":"CP003089","term_id":"357938589","term_text":"CP003089"}}CP003089 (Chromosome 3), {"type":"entrez-nucleotide","attrs":{"text":"CP003090","term_id":"357939954","term_text":"CP003090"}}CP003090 (plasmid BYI23_D), {"type":"entrez-nucleotide","attrs":{"text":"CP003091","term_id":"357941606","term_text":"CP003091"}}CP003091 (plasmid BYI23_E) {"type":"entrez-nucleotide","attrs":{"text":"CP003092","term_id":"357941997","term_text":"CP003092"}}CP003092 (plasmid BYI23_F) [10]
• Brucella suis VBI22, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP003128","term_id":"358257303","term_text":"CP003128"}}CP003128, {"type":"entrez-nucleotide","attrs":{"text":"CP003129","term_id":"358259429","term_text":"CP003129"}}CP003129 [11]
• Comamonas testosteroni ATCC 11996, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AHIL00000000","term_id":"371454882","term_text":"AHIL00000000"}}AHIL00000000 [12]
• “Commensalibacter intestini” A911^T, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AGFR00000000","term_id":"353673384","term_text":"AGFR00000000"}}AGFR00000000 [13]
• Edwardsiella ictaluri, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP001600.1","term_id":"238867551","term_text":"CP001600.1"}}CP001600.1 [14]
• Enterobacter cloacae subsp. dissolvens SDM, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AGSY00000000","term_id":"357435944","term_text":"AGSY00000000"}}AGSY00000000 [15]
• “Gluconobacter morbifer” G707^T, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AGQV00000000","term_id":"356416073","term_text":"AGQV00000000"}}AGQV00000000 [16]
• Legionella dumoffii TEX-KL, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AGVT00000000","term_id":"358009168","term_text":"AGVT00000000"}}AGVT00000000 [17]
• Legionella dumoffii NY-23, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AGVU00000000","term_id":"358009167","term_text":"AGVU00000000"}}AGVU00000000 [17]
• Legionella pneumophila serogroup 12 Strain 570-CO-H, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP003192","term_id":"364506764","term_text":"CP003192"}}CP003192 [18]
• Marinobacterium stanieri S30, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AFPL00000000","term_id":"339778849","term_text":"AFPL00000000"}}AFPL00000000 [19]
• “Marinobacter manganoxydans” MnI7-9, sequence accession {"type":"entrez-nucleotide-range","attrs":{"text":"CP001978 to CP001980","start_term":"CP001978","end_term":"CP001980","start_term_id":"311692891","end_term_id":"311697125"}}CP001978 to CP001980 [20]
• Mesorhizobium alhagi CCNWXJ12-2T, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AHAM00000000","term_id":"359256606","term_text":"AHAM00000000"}}AHAM00000000 [21]
• Mesorhizobium amorphae, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AGSN00000000","term_id":"355545111","term_text":"AGSN00000000"}}AGSN00000000 [22]
• Methylomicrobium alcaliphilum 20Z, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"FO082060","term_id":"351716053","term_text":"FO082060"}}FO082060 and {"type":"entrez-nucleotide","attrs":{"text":"FO082061","term_id":"351720036","term_text":"FO082061"}}FO082061 [23]
• Mitsuaria sp. Strain H24L5A, sequence accession {"type":"entrez-nucleotide-range","attrs":{"text":"CAFG01000001 to CAFG01000607","start_term":"CAFG01000001","end_term":"CAFG01000607","start_term_id":"354809229","end_term_id":"354808623"}}CAFG01000001 to CAFG01000607 [24]
• Novosphingobium pentaromativorans US6-1, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AGFM00000000","term_id":"357601355","term_text":"AGFM00000000"}}AGFM00000000 [25]
• Pantoea ananatis B1-9, sequence accession {"type":"entrez-nucleotide-range","attrs":{"text":"CAEI01000001 to CAEI01000169","start_term":"CAEI01000001","end_term":"CAEI01000169","start_term_id":"344197887","end_term_id":"344197719"}}CAEI01000001 to CAEI01000169 [26]
• Pantoea ananatis LMG 5342, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"HE617160","term_id":"365184443","term_text":"HE617160"}}HE617160 (chromosome), {"type":"entrez-nucleotide","attrs":{"text":"HE617161","term_id":"365188784","term_text":"HE617161"}}HE617161 (pPANA10) [27]
• Pantoea ananatis Strain PA13, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP003085","term_id":"354986417","term_text":"CP003085"}}CP003085 and {"type":"entrez-nucleotide","attrs":{"text":"CP003086","term_id":"354685304","term_text":"CP003086"}}CP003086 [28]
• Pseudomonas aeruginosa, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AFXI00000000","term_id":"343788111","term_text":"AFXI00000000"}}AFXI00000000 [29]
• Pseudomonas aeruginosa, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AFXJ00000000","term_id":"343788109","term_text":"AFXJ00000000"}}AFXJ00000000 [29]
• Pseudomonas aeruginosa, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AFXK00000000","term_id":"343788110","term_text":"AFXK00000000"}}AFXK00000000 [29]
• Pseudomonas chlororaphis GP72, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AHAY01000000","term_id":"359757954","term_text":"gb||AHAY01000000"}}AHAY01000000 [30]
• Pseudomonas fluorescens F113, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP003150","term_id":"359757955","term_text":"CP003150"}}CP003150 [31]
• Pseudomonas fluorescens Wayne 1R, sequence accession {"type":"entrez-nucleotide-range","attrs":{"text":"CADX01000001 to CADX01000090","start_term":"CADX01000001","end_term":"CADX01000090","start_term_id":"354924103","end_term_id":"354924014"}}CADX01000001 to CADX01000090 [32]
• Pseudomonas fluorescens Wood1R, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CAFF01000001","term_id":"354698772","term_text":"CAFF01000001"}}CAFF01000001 to {"type":"entrez-nucleotide","attrs":{"text":"CAFF01001437","term_id":"354697336","term_text":"CAFF01001437"}}CAFF01001437 [32]
• Pseudomonas psychrotolerans L19, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AHBD00000000","term_id":"359372666","term_text":"AHBD00000000"}}AHBD00000000 [33]
• Pseudoalteromonas rubra ATCC 29570^T, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AHCD00000000","term_id":"540289291","term_text":"AHCD00000000"}}AHCD00000000 [34]
• Pseudomonas stutzeri SDM-LAC, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AGSX00000000","term_id":"357435965","term_text":"AGSX00000000"}}AGSX00000000 [35]
• Pseudoxanthomonas spadix BD-a59, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP003093","term_id":"357433120","term_text":"CP003093"}}CP003093 [36]
• Rickettsia slovaca, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP002428","term_id":"360041315","term_text":"CP002428"}}CP002428 [37]
• Salmonella enterica serovar Pullorum RKS5078, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP003047","term_id":"357204415","term_text":"CP003047"}}CP003047 [38]
• Sinorhizobium meliloti CCNWSX0020, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AGVV00000000","term_id":"359507569","term_text":"AGVV00000000"}}AGVV00000000 [39]
• Sphingobium sp. Strain SYK-6, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AP012222","term_id":"345135066","term_text":"AP012222"}}AP012222 and {"type":"entrez-nucleotide","attrs":{"text":"AP012223","term_id":"345138980","term_text":"AP012223"}}AP012223 [40]
• Sphingomonas sp. Strain PAMC 26605, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AHIS00000000","term_id":"366040305","term_text":"AHIS00000000"}}AHIS00000000 [41]
• Stenotrophomonas maltophilia RR-10, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AGRB00000000","term_id":"359757773","term_text":"AGRB00000000"}}AGRB00000000 [42]
• Strain HIMB30, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AGIG00000000","term_id":"349602640","term_text":"AGIG00000000"}}AGIG00000000 [43]
• Taylorella equigenitalis, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP003059","term_id":"347973256","term_text":"CP003059"}}CP003059 [44]
• Vibrio campbellii DS40M4, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AGIE00000000","term_id":"358251732","term_text":"AGIE00000000"}}AGIE00000000 [45]
• Vibrio fischeri SR5, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AHIH00000000","term_id":"371496097","term_text":"AHIH00000000"}}AHIH00000000 [46]
• Yersinia enterocolitica, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AGQO00000000","term_id":"351780838","term_text":"AGQO00000000"}}AGQO00000000 [47]

Phylum Tenericutes

• Candidatus Mycoplasma haemominutum, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"HE613254","term_id":"357978897","term_text":"HE613254"}}HE613254 [48]
• Mycoplasma haemocanis strain Illinois, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP003199","term_id":"363988676","term_text":"CP003199"}}CP003199 [49]
• Mycoplasma iowae, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AGFP00000000","term_id":"349504222","term_text":"AGFP00000000"}}AGFP00000000 [50]
• Mycoplasma pneumoniae Type 2a Strain 309, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AP012303","term_id":"358640274","term_text":"AP012303"}}AP012303 [51]

Phylum Firmicutes

• Bacillus cereus F837/76, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP003187","term_id":"364509831","term_text":"CP003187"}}CP003187 (chromosome) {"type":"entrez-nucleotide","attrs":{"text":"CP003188","term_id":"364515227","term_text":"CP003188"}}CP003188 (pF837_55kb), {"type":"entrez-nucleotide","attrs":{"text":"CP003189","term_id":"364515372","term_text":"CP003189"}}CP003189 (pF837_10kb) [52]
• Brevibacillus laterosporus Strain GI-9, sequence accession {"type":"entrez-nucleotide-range","attrs":{"text":"CAGD01000001 to CAGD01000061","start_term":"CAGD01000001","end_term":"CAGD01000061","start_term_id":"359745324","end_term_id":"359745264"}}CAGD01000001 to CAGD01000061 [53]
• Clostridium sporogenes PA 3679, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AGAH00000000","term_id":"364889226","term_text":"AGAH00000000"}}AGAH00000000 [54]
• Enterococcus mundtii CRL1656, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AFWZ00000000.1","term_id":"354620965","term_text":"AFWZ00000000.1"}}AFWZ00000000.1 [55]
• Geobacillus thermoleovorans CCB_US3_UF5, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP003125","term_id":"359285645","term_text":"CP003125"}}CP003125 [56]
• Lactobacillus curvatus Strain CRL705, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AGBU01000000","term_id":"354514905","term_text":"gb||AGBU01000000"}}AGBU01000000 [57]
• Lactobacillus rhamnosus ATCC 8530, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP003094","term_id":"355393429","term_text":"CP003094"}}CP003094 [58]
• Lactobacillus rhamnosus R0011, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AGKC00000000","term_id":"357540515","term_text":"AGKC00000000"}}AGKC00000000 [59]
• Lactococcus garvieae TB25, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AGQX01000000","term_id":"359031556","term_text":"gb||AGQX01000000"}}AGQX01000000 [60]
• Lactococcus garvieae LG9, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AGQY01000000","term_id":"359031592","term_text":"gb||AGQY01000000"}}AGQY01000000 [60]
• Lactococcus lactis subsp. cremoris A76, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP003132","term_id":"358748197","term_text":"CP003132"}}CP003132 (chromosome), {"type":"entrez-nucleotide","attrs":{"text":"CP003136","term_id":"358750967","term_text":"CP003136"}}CP003136 (pQA505), {"type":"entrez-nucleotide","attrs":{"text":"CP003135","term_id":"358750954","term_text":"CP003135"}}CP003135 (PQA518), {"type":"entrez-nucleotide","attrs":{"text":"CP003134","term_id":"358750911","term_text":"CP003134"}}CP003134 (pQA549), {"type":"entrez-nucleotide","attrs":{"text":"CP003133","term_id":"358750841","term_text":"CP003133"}}CP003133 (pQA554) [61]
• Leuconostoc citreum LBAE C10, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CAGE00000000","term_id":"365487970","term_text":"CAGE00000000"}}CAGE00000000 [62]
• Leuconostoc citreum LBAE C11, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CAGF00000000","term_id":"365512054","term_text":"CAGF00000000"}}CAGF00000000 [62]
• Leuconostoc citreum LBAE E16, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CAGG00000000","term_id":"365528100","term_text":"CAGG00000000"}}CAGG00000000 [62]
• Leuconostoc mesenteroides subsp. mesenteroides Strain J18, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP003101","term_id":"948298071","term_text":"CP003101"}}CP003101 [63]
• Paenibacillus peoriae Strain KCTC 3763^T, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AGFX00000000","term_id":"359367787","term_text":"AGFX00000000"}}AGFX00000000 [64]
• Pediococcus acidilactici MA18/5M, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AGKB00000000","term_id":"357540603","term_text":"AGKB00000000"}}AGKB00000000 [65]
• Pediococcus claussenii ATCC BAA-344^T, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP003137","term_id":"361055534","term_text":"CP003137"}}CP003137 (chromosome), {"type":"entrez-nucleotide","attrs":{"text":"CP003138","term_id":"361057275","term_text":"CP003138"}}CP003138 (pPECL-1), {"type":"entrez-nucleotide","attrs":{"text":"CP003139","term_id":"361057278","term_text":"CP003139"}}CP003139 (pPECL-2), {"type":"entrez-nucleotide","attrs":{"text":"CP003140","term_id":"361057281","term_text":"CP003140"}}CP003140 (pPECL-3), {"type":"entrez-nucleotide","attrs":{"text":"CP003141","term_id":"361057302","term_text":"CP003141"}}CP003141 (pPECL-4), {"type":"entrez-nucleotide","attrs":{"text":"CP003142","term_id":"361057319","term_text":"CP003142"}}CP003142 (pPECL-5), {"type":"entrez-nucleotide","attrs":{"text":"CP003143","term_id":"361057355","term_text":"CP003143"}}CP003143 (pPECL-6), {"type":"entrez-nucleotide","attrs":{"text":"CP003144","term_id":"361057377","term_text":"CP003144"}}CP003144 (pPECL-7), {"type":"entrez-nucleotide","attrs":{"text":"CP003145","term_id":"380450589","term_text":"CP003145"}}CP003145 (pPECL-8) [66]
• Staphylococcus aureus M013, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP003166","term_id":"359829121","term_text":"CP003166"}}CP003166 [67]
• Staphylococcus aureus subsp. aureus TW20, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"FN433596","term_id":"269939526","term_text":"FN433596"}}FN433596 [68]
• Weissella confusa LBAE C39-2, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CAGH00000000","term_id":"365549261","term_text":"CAGH00000000"}}CAGH00000000 [69]

Phylum Actinobacteria

• Corynebacterium casei, sequence accession {"type":"entrez-nucleotide-range","attrs":{"text":"CAFW01000001 to CAFW01000106","start_term":"CAFW01000001","end_term":"CAFW01000106","start_term_id":"356609265","end_term_id":"356606462"}}CAFW01000001 to CAFW01000106 [70]
• Corynebacterium glutamicum, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AGQQ00000000","term_id":"658109743","term_text":"AGQQ00000000"}}AGQQ00000000 [71]
• Leucobacter chromiiresistens, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AGCW00000000","term_id":"353529976","term_text":"AGCW00000000"}}AGCW00000000 [72]
• Mycobacterium abscessus, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AGQU00000000","term_id":"353453148","term_text":"AGQU00000000"}}AGQU00000000 [73]
• Propionibacterium acnes ST9, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP003195","term_id":"365742920","term_text":"CP003195"}}CP003195 [74]
• Propionibacterium acnes ST22, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP003196","term_id":"365740656","term_text":"CP003196"}}CP003196 [74]
• Propionibacterium acnes ST27, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP003197","term_id":"365738411","term_text":"CP003197"}}CP003197 [74]
• Saccharomonospora azurea SZMC 14600, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AHBX00000000","term_id":"359740650","term_text":"AHBX00000000"}}AHBX00000000 [75]
• Streptomyces sp. Strain TOR3209, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AGNH00000000","term_id":"359357427","term_text":"AGNH00000000"}}AGNH00000000 [76]
• Streptomyces sp. Strain W007, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AGSW00000000","term_id":"364010697","term_text":"AGSW00000000"}}AGSW00000000 [77]

Phylum Spirochaetes

• Borrelia valaisiana VS116, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"ABCY02000001","term_id":"224510974","term_text":"ABCY02000001"}}ABCY02000001 (chromosome), {"type":"entrez-nucleotide","attrs":{"text":"CP001439","term_id":"224497263","term_text":"CP001439"}}CP001439 (plasmid Ip17), {"type":"entrez-nucleotide","attrs":{"text":"CP001437","term_id":"224497187","term_text":"CP001437"}}CP001437 (Ip25), {"type":"entrez-nucleotide","attrs":{"text":"CP001440","term_id":"224497290","term_text":"CP001440"}}CP001440 (plasmid Ip 28-3), {"type":"entrez-nucleotide","attrs":{"text":"CP001442","term_id":"224497476","term_text":"CP001442"}}CP001442 (plasmid Ip28-8), {"type":"entrez-nucleotide","attrs":{"text":"CP001436","term_id":"224497148","term_text":"CP001436"}}CP001436 (Ip 36), {"type":"entrez-nucleotide","attrs":{"text":"CP001433","term_id":"224496993","term_text":"CP001433"}}CP001433 (plasmid Ip 54), {"type":"entrez-nucleotide","attrs":{"text":"CP001438","term_id":"224497250","term_text":"CP001438"}}CP001438 (plasmid cp9), {"type":"entrez-nucleotide","attrs":{"text":"CP001432","term_id":"224496964","term_text":"CP001432"}}CP001432 (plasmid cp26), {"type":"entrez-nucleotide","attrs":{"text":"CP001441","term_id":"224497433","term_text":"CP001441"}}CP001441 (plasmid cp32-5), {"type":"entrez-nucleotide","attrs":{"text":"CP001434","term_id":"224497064","term_text":"CP001434"}}CP001434 (plasmid cp32-7), {"type":"entrez-nucleotide","attrs":{"text":"CP001435","term_id":"224497109","term_text":"CP001435"}}CP001435 (plasmid cp32-10) [78]
• “Borrelia bissettii” DN127, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP002746","term_id":"342222012","term_text":"CP002746"}}CP002746 (chromosome), {"type":"entrez-nucleotide","attrs":{"text":"CP002756","term_id":"342223236","term_text":"CP002756"}}CP002756 (plasmid Ip12), {"type":"entrez-nucleotide","attrs":{"text":"CP002757","term_id":"342223270","term_text":"CP002757"}}CP002757 (plasmid Ip25), {"type":"entrez-nucleotide","attrs":{"text":"CP002758","term_id":"342223295","term_text":"CP002758"}}CP002758 (plasmid 28-3), {"type":"entrez-nucleotide","attrs":{"text":"CP002759","term_id":"342223320","term_text":"CP002759"}}CP002759 (plasmid Ip 28-4), {"type":"entrez-nucleotide","attrs":{"text":"CP002760","term_id":"342223351","term_text":"CP002760"}}CP002760 (Ip28-7), {"type":"entrez-nucleotide","attrs":{"text":"CP002761","term_id":"342223388","term_text":"CP002761"}}CP002761 (plasmid Ip54), {"type":"entrez-nucleotide","attrs":{"text":"CP002762","term_id":"342223459","term_text":"CP002762"}}CP002762 (plasmid Ip56), {"type":"entrez-nucleotide","attrs":{"text":"CP002755","term_id":"342223223","term_text":"CP002755"}}CP002755 (plasmid cp9), {"type":"entrez-nucleotide","attrs":{"text":"CP002747","term_id":"342222829","term_text":"CP002747"}}CP002747 (plasmid cp26), {"type":"entrez-nucleotide","attrs":{"text":"CP002749","term_id":"342222904","term_text":"CP002749"}}CP002749 (plasmid cp32-3), {"type":"entrez-nucleotide","attrs":{"text":"CP002750","term_id":"342222947","term_text":"CP002750"}}CP002750 (plasmid cp32-4), {"type":"entrez-nucleotide","attrs":{"text":"CP002751","term_id":"342222990","term_text":"CP002751"}}CP002751 (plasmid 32-5), {"type":"entrez-nucleotide","attrs":{"text":"CP002752","term_id":"342223034","term_text":"CP002752"}}CP002752 (plasmid cp32-6), {"type":"entrez-nucleotide","attrs":{"text":"CP002753","term_id":"342223077","term_text":"CP002753"}}CP002753 (plasmid cp32-7), CP0027554 (plasmid cp32-9), {"type":"entrez-nucleotide","attrs":{"text":"CP002748","term_id":"342222857","term_text":"CP002748"}}CP002748 (plasmid cp32-11) [78]
• Borrelia spielmanii A14S, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"ABKB02000001","term_id":"224514548","term_text":"ABKB02000001"}}ABKB02000001 (chromosome), {"type":"entrez-nucleotide","attrs":{"text":"CP001468","term_id":"224497637","term_text":"CP001468"}}CP001468 (plasmid Ip17), {"type":"entrez-nucleotide","attrs":{"text":"CP001471","term_id":"224497796","term_text":"CP001471"}}CP001471 (Ip28-3), {"type":"entrez-nucleotide","attrs":{"text":"CP001470","term_id":"224497745","term_text":"CP001470"}}CP001470 (plasmid Ip28-4), {"type":"entrez-nucleotide","attrs":{"text":"CP001465","term_id":"224497532","term_text":"CP001465"}}CP001465 (plasmid Ip28-2), {"type":"entrez-nucleotide","attrs":{"text":"CP001466","term_id":"224497566","term_text":"CP001466"}}CP001466 (plasmid Ip36), {"type":"entrez-nucleotide","attrs":{"text":"CP001464","term_id":"224497496","term_text":"CP001464"}}CP001464 (plasmid Ip38), {"type":"entrez-nucleotide","attrs":{"text":"CP001469","term_id":"224497671","term_text":"CP001469"}}CP001469 (plasmid Ip54), {"type":"entrez-nucleotide","attrs":{"text":"ABKB02000016","term_id":"224513758","term_text":"ABKB02000016"}}ABKB02000016, {"type":"entrez-nucleotide","attrs":{"text":"ABKB02000020","term_id":"224513743","term_text":"ABKB02000020"}}ABKB02000020 (plasmid cp9), {"type":"entrez-nucleotide","attrs":{"text":"CP001467","term_id":"224497607","term_text":"CP001467"}}CP001467 (plasmid cp26), {"type":"entrez-nucleotide","attrs":{"text":"ABKB02000026","term_id":"224513697","term_text":"ABKB02000026"}}ABKB02000026 (plasmid cp32-3), {"type":"entrez-nucleotide","attrs":{"text":"ABKB02000031","term_id":"224513641","term_text":"ABKB02000031"}}ABKB02000031 (plasmid 32-5), {"type":"entrez-nucleotide","attrs":{"text":"ABKB02000021","term_id":"224513736","term_text":"ABKB02000021"}}ABKB02000021 (plasmid cp32-12), {"type":"entrez-nucleotide","attrs":{"text":"ABKB02000014","term_id":"224513768","term_text":"ABKB02000014"}}ABKB02000014 (unidentified) [78]

Non-Bacterial genomes

• Aspergillus flavus, sequence accession {"type":"entrez-geo","attrs":{"text":"GSE32177","term_id":"32177"}}GSE32177 [79]
• Bacteriophage SPN3UB, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"JQ288021","term_id":"378408798","term_text":"JQ288021"}}JQ288021 [80]
• Bamboo mitochondria, sequence accession {"type":"entrez-nucleotide-range","attrs":{"text":"JQ235166 to JQ235179","start_term":"JQ235166","end_term":"JQ235179","start_term_id":"372861916","end_term_id":"372861969"}}JQ235166 to JQ235179 [81]
• Boea hygrometrica chloroplast, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"JN107811","term_id":"340549387","term_text":"JN107811"}}JN107811 [82]
• Boea hygrometrica mitochondrial, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"JN107812","term_id":"340549473","term_text":"JN107812"}}JN107812 [82]
• Canine Picornavirus, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"JN831356","term_id":"377826518","term_text":"JN831356"}}JN831356 [83]
• Chandipura virus (CHPV) CIN0327, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"GU212856.1","term_id":"309261828","term_text":"GU212856.1"}}GU212856.1 [84]
• Chandipura virus (CHPV) CIN0451, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"GU212857.1","term_id":"309261834","term_text":"GU212857.1"}}GU212857.1 [84]
• Chandipura virus (CHPV) CIN0751, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"GU212858.1","term_id":"309261840","term_text":"GU212858.1"}}GU212858.1 [84]
• Chandipura virus (CHPV) CIN0755, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"GU190711.1","term_id":"309099431","term_text":"GU190711.1"}}GU190711.1 [84]
• Chinese Porcine Parvovirus Strain PPV2010, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"JN872448","term_id":"374676766","term_text":"JN872448"}}JN872448 [85]
• Common midwife toad megavirus, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"JQ231222","term_id":"375281729","term_text":"JQ231222"}}JQ231222 [86]
• Dengue Virus Serotype 4, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"JN983813","term_id":"372290533","term_text":"JN983813"}}JN983813 [87]
• Duck Tembusu Virus, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"JF270480","term_id":"367465451","term_text":"JF270480"}}JF270480 [88]
• Duck Tembusu Virus, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"JQ314464","term_id":"377824036","term_text":"JQ314464"}}JQ314464 [88]
• Duck Tembusu Virus, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"JQ314465","term_id":"377824038","term_text":"JQ314465"}}JQ314465 [88]
• Emiliania huxleyi Virus 202, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"HQ634145","term_id":"356927554","term_text":"HQ634145"}}HQ634145 [89]
• Emiliania huxleyi Virus EhV-88, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"JF974310","term_id":"347600450","term_text":"JF974310"}}JF974310 [89]
• Emiliania huxleyi EhV-201, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"JF974311","term_id":"357972615","term_text":"JF974311"}}JF974311 [89]
• Emiliania huxleyi EhV-207, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"JF974317","term_id":"347600924","term_text":"JF974317"}}JF974317 [89]
• Emiliania huxleyi EhV-208, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"JF974318","term_id":"347601393","term_text":"JF974318"}}JF974318 [89]
• Glarea lozoyensis, sequence accession GUE00000000 [90]
• Nannochloropis gaditana, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AGNI00000000","term_id":"366047505","term_text":"AGNI00000000"}}AGNI00000000 [91]
• Oryza sativa cv., sequence accession DRA000499 [92]
• Partetravirus, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"JN990269","term_id":"374718987","term_text":"JN990269"}}JN990269 [93]
• Porcine Bocavirus PBoV5, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"JN831651","term_id":"371449604","term_text":"JN831651"}}JN831651 [94]
• Porcine epidemic diarrhea virus, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"JQ282909","term_id":"377824029","term_text":"JQ282909"}}JQ282909 [95]
• Pseudomonas aeruginosa lytic bacteriophage PA1Ø, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"HM624080","term_id":"315418954","term_text":"HM624080"}}HM624080 [96]
• Pseudomonas fluorescens phage OBP, sequence accesssion {"type":"entrez-nucleotide","attrs":{"text":"JN627160","term_id":"359842892","term_text":"JN627160"}}JN627160 [97]
• RNA Virus from Avocado, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"JN880414","term_id":"371444768","term_text":"JN880414"}}JN880414 [98]
• Salmonella enterica Serovar Typhimurium Bacteriophage SPN1S, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"JN391180","term_id":"370344404","term_text":"JN391180"}}JN391180 [99]
• Schistosoma haematobium, sequence accession PRJNA78265 [100]
• Schistosoma mansoni, sequence accession {"type":"entrez-protein","attrs":{"text":"ERP00038","term_id":"550209647","term_text":"ERP00038"}}ERP00038 [101]
• Stenopirates sp., sequence accession {"type":"entrez-nucleotide","attrs":{"text":"JN100019","term_id":"340008214","term_text":"JN100019"}}JN100019 [102]
• T7-Like Virus, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"JN651747","term_id":"374713556","term_text":"JN651747"}}JN651747 [103]
• Vibrio harveyi siphophage VHS1, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"JF713456","term_id":"334898816","term_text":"JF713456"}}JF713456 [104]
• Tyrolean ice man, sequence accession ERP001144 [105]

     

Genome sequences published outside of Standards in Genomic Sciences, March-April 2012

The purpose of this table is to provide the community with a citable record of publications of ongoing genome sequencing projects that have led to a publication in the scientific literature. While our goal is to make the list complete, there is no guarantee that we may have omitted one or more publications appearing in this time frame. Readers and authors who wish to have publications added to subsequent versions of this list are invited to provide the bibliographic data for such references to the SIGS editorial office.

Phylum Euryarchaeota

• Halococcus hamelinensis, sequence accession PRJNA80845 [1]
• “Methanocella conradii” HZ254, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP003243","term_id":"379319823","term_text":"CP003243"}}CP003243 [2]
• Thermococcus litoralis NS-C, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AHVB00000000","term_id":"374743520","term_text":"AHVB00000000"}}AHVB00000000 [3]

Phylum Crenarchaeota

• Candidatus Nitrosopumilus salaria” BD31, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AEXL00000000","term_id":"386807666","term_text":"AEXL00000000"}}AEXL00000000 [4]
• Candidatus Nitrosoarchaeum limnia, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AHJG00000000","term_id":"367466343","term_text":"AHJG00000000"}}AHJG00000000 [5]

Phylum Deinococcus-Thermus

• Deinococcus gobiensis, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP002536","term_id":"324314064","term_text":"CP002536"}}CP002536 [6]

Phylum Proteobacteria

• Aggregatibacter actinomycetemcomitans strain ANH9381, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP003099","term_id":"365745154","term_text":"CP003099"}}CP003099 [7]
• Alishewanella jeotgali, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AHTH00000000","term_id":"374571619","term_text":"AHTH00000000"}}AHTH00000000 [8]
• Enterobacter aerogenes KCTC 2190, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP002824","term_id":"334732565","term_text":"CP002824"}}CP002824 [9]
• Escherichia coli O104:H4, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AFOB02000092","term_id":"340739517","term_text":"AFOB02000092"}}AFOB02000092 [10]
• Helicobacter pylori strains 17874, sequence accession PRJNA76569 [11]
• Helicobacter pylori strains P79, sequence accession PRJNA76567 [11]
• Janthinobacterium sp. Strain PAMC 25724, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AHHB00000000","term_id":"372292151","term_text":"AHHB00000000"}}AHHB00000000 [12]
• Klebsiella oxytoca KCTC 1686, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP003218","term_id":"365906294","term_text":"CP003218"}}CP003218 [13]
• Klebsiella pneumoniae subsp. pneumoniae HS11286, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP003200","term_id":"364515570","term_text":"CP003200"}}CP003200 (chromosome), {"type":"entrez-nucleotide","attrs":{"text":"CP003223","term_id":"365803686","term_text":"CP003223"}}CP003223 (plasmid pKPHS1), {"type":"entrez-nucleotide","attrs":{"text":"CP003224","term_id":"365803828","term_text":"CP003224"}}CP003224 (plasmid pKPHS2), {"type":"entrez-nucleotide","attrs":{"text":"CP003225","term_id":"365803989","term_text":"CP003225"}}CP003225 (plasmid pKPHS3), {"type":"entrez-nucleotide","attrs":{"text":"CP003226","term_id":"365804142","term_text":"CP003226"}}CP003226 (plasmid pKPHS4), {"type":"entrez-nucleotide","attrs":{"text":"CP003227","term_id":"365804147","term_text":"CP003227"}}CP003227 (plasmid pKPHS5), {"type":"entrez-nucleotide","attrs":{"text":"CP003228","term_id":"365804153","term_text":"CP003228"}}CP003228 (plasmid pKPHS6) [14]
• Oceanimonas sp. GK1, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP003171","term_id":"372983507","term_text":"CP003171"}}CP003171 [15]
• “Pseudogulbenkiania ferrooxidans” Strain 2002, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"NZ_ACIS01000000","term_id":"224827334","term_text":"ref||NZ_ACIS01000000"}}NZ_ACIS01000000 [16]
• Pseudomonas extremaustralis 14-3b, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AHIP00000000","term_id":"371721769","term_text":"AHIP00000000"}}AHIP00000000 [17]
• Pseudomonas sp. Strain PAMC 25886, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AHHC00000000","term_id":"372002201","term_text":"AHHC00000000"}}AHHC00000000 [18]
• Psychrobacter, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AHVZ00000000","term_id":"375126956","term_text":"AHVZ00000000"}}AHVZ00000000 [19]
• Rahnella sp. Strain Y9602, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP002505","term_id":"321165934","term_text":"CP002505"}}CP002505 [20]
• Rhizobium sp. Strain PDO1-076, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AHZC00000000","term_id":"375058045","term_text":"AHZC00000000"}}AHZC00000000 [21]
• Rhodospirillum photometricum DSM122, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"HE663493","term_id":"378401447","term_text":"HE663493"}}HE663493 [22]
• “Rickettsia sibirica sibirica”, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AHIZ00000000","term_id":"374669031","term_text":"AHIZ00000000"}}AHIZ00000000 [23]
• Rickettsia sibirica subsp. mongolitimonae strain HA-91, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AHZB00000000","term_id":"375318263","term_text":"AHZB00000000"}}AHZB00000000 [24]
• Salmonella enterica subsp. enterica Serotype Enteritidis Strain LA5, sequence accession [25]
• Salmonella enterica subsp. enterica Serotype Senftenberg Strain SS209, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CAGQ00000000","term_id":"379987603","term_text":"CAGQ00000000"}}CAGQ00000000 [26]
• Salmonella enterica subsp. enterica Serovar Typhi P-stx-12, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP003278","term_id":"374352002","term_text":"CP003278"}}CP003278 (chromosome) and {"type":"entrez-nucleotide","attrs":{"text":"CP003279","term_id":"374356693","term_text":"CP003279"}}CP003279 (plasmid) [27]
• Sphingomonas echinoides ATCC 14820, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AHIR00000000","term_id":"366040205","term_text":"AHIR00000000"}}AHIR00000000 [28]
• Strain HIMB55, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AGIF00000000","term_id":"374304583","term_text":"AGIF00000000"}}AGIF00000000 [29]
• Vibrio harveyi CAIM 1792, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AHHQ00000000","term_id":"374671508","term_text":"AHHQ00000000"}}AHHQ00000000 [30]
• Wolbachia Strain wAlbB, sequence accession {"type":"entrez-nucleotide-range","attrs":{"text":"CAGB01000001 to CAGB01000165","start_term":"CAGB01000001","end_term":"CAGB01000165","start_term_id":"371933004","end_term_id":"371931774"}}CAGB01000001 to CAGB01000165 [31]
• Xanthomonas axonopodis pv. punicae Strain LMG 859, sequence accession {"type":"entrez-nucleotide-range","attrs":{"text":"CAGJ01000001 to CAGJ01000217","start_term":"CAGJ01000001","end_term":"CAGJ01000217","start_term_id":"372556075","end_term_id":"372551622"}}CAGJ01000001 to CAGJ01000217 [32]

Phylum Tenericutes

• Mycoplasma hyorhinis Strain GDL-1, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP003231","term_id":"367460291","term_text":"CP003231"}}CP003231 [33]

Phylum Firmicutes

• Bacillus subtilis, sequence accession BGSCID 3A27 through BGSCID 28A4 [34]
• Clostridium difficile Strain CD37, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AHJJ00000000","term_id":"371930118","term_text":"AHJJ00000000"}}AHJJ00000000 [35]
• Clostridium perfringens, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AFES00000000","term_id":"380306484","term_text":"AFES00000000"}}AFES00000000 [36]
• Lactobacillus fructivorans KCTC 3543, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AEQY00000000","term_id":"316986063","term_text":"AEQY00000000"}}AEQY00000000 [37]
• Lactococcus lactis IO-1, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AP012281","term_id":"374672113","term_text":"AP012281"}}AP012281 [38]
• Lactobacillus plantarum strain NC8, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AGRI00000000","term_id":"376011245","term_text":"AGRI00000000"}}AGRI00000000 [39]
• Paenibacillus dendritiformis C454, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AHKH00000000","term_id":"374393106","term_text":"AHKH00000000"}}AHKH00000000 [40]
• Paenibacillus sp. Strain Aloe-11, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AGFI00000000","term_id":"374477730","term_text":"AGFI00000000"}}AGFI00000000 [41]
• “Peptoniphilus rhinitidis” 1-13^T, sequence accession {"type":"entrez-nucleotide-range","attrs":{"text":"BAEW01000001 to BAEW01000056","start_term":"BAEW01000001","end_term":"BAEW01000056","start_term_id":"374722129","end_term_id":"374722074"}}BAEW01000001 to BAEW01000056 [42]
• Streptococcus macedonicus ACA-DC 198, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"HE613569","term_id":"372283141","term_text":"HE613569"}}HE613569 and {"type":"entrez-nucleotide","attrs":{"text":"HE613570","term_id":"372285142","term_text":"HE613570"}}HE613570 [43]
• Staphylococcus aureus VC40, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP003033","term_id":"374362062","term_text":"CP003033"}}CP003033 [44]
• Streptococcus infantarius subsp. infantarius Strain CJ18, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP003295","term_id":"374681091","term_text":"CP003295"}}CP003295 (chromosome), {"type":"entrez-nucleotide","attrs":{"text":"CP003296","term_id":"374682963","term_text":"CP003296"}}CP003296 (plasmid) [45]
• Streptococcus macedonicus ACA-DC 198, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"HE613569","term_id":"372283141","term_text":"HE613569"}}HE613569 (chromosome), {"type":"entrez-nucleotide","attrs":{"text":"HE613570","term_id":"372285142","term_text":"HE613570"}}HE613570 (plasmid pSMA198) [46]

Phylum Actinobacteria

• Actinoplanes sp. SE50/110, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP003170","term_id":"359832573","term_text":"CP003170"}}CP003170 [47]
• Amycolatopsis sp. Strain ATCC 39116, sequence accession [48]
• Nocardia cyriacigeorgica GUH-2, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"FO082843","term_id":"374843763","term_text":"FO082843"}}FO082843 [49]
• Salinibacterium sp., sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AHWA00000000","term_id":"375323651","term_text":"AHWA00000000"}}AHWA00000000 [50]
• Streptomyces acidiscabies 84-104, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AHBF00000000","term_id":"372137622","term_text":"AHBF00000000"}}AHBF00000000 [51]

Non-Bacterial genomes

• Bluetongue Virus Serotype 2, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AJ783905","term_id":"70907482","term_text":"AJ783905"}}AJ783905 (Seg-6) and {"type":"entrez-nucleotide","attrs":{"text":"JQ681257","term_id":"383932043","term_text":"JQ681257"}}JQ681257 (Seg-1), {"type":"entrez-nucleotide","attrs":{"text":"JQ681257","term_id":"383932043","term_text":"JQ681257"}}JQ681257 (Seg-1), {"type":"entrez-nucleotide","attrs":{"text":"JQ681258","term_id":"383932045","term_text":"JQ681258"}}JQ681258 (Seg-2), {"type":"entrez-nucleotide","attrs":{"text":"JQ681259","term_id":"383932047","term_text":"JQ681259"}}JQ681259 (Seg-3), {"type":"entrez-nucleotide","attrs":{"text":"JQ681260","term_id":"383932049","term_text":"JQ681260"}}JQ681260 (Seg-4), {"type":"entrez-nucleotide","attrs":{"text":"JQ681261","term_id":"383932051","term_text":"JQ681261"}}JQ681261 (Seg-5), {"type":"entrez-nucleotide","attrs":{"text":"JQ681262","term_id":"383932053","term_text":"JQ681262"}}JQ681262 (Seg-7), JQ6812563 (Seg-8), JQ6812564 (Seg-9), to {"type":"entrez-nucleotide","attrs":{"text":"JQ681265","term_id":"383932059","term_text":"JQ681265"}}JQ681265 (Seg-10) [52]
• Virus Serotype 1, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AJ585111","term_id":"118420282","term_text":"AJ585111"}}AJ585111 (Seg-2), {"type":"entrez-nucleotide","attrs":{"text":"AJ586659","term_id":"47826214","term_text":"AJ586659"}}AJ586659 (Seg-6), {"type":"entrez-nucleotide","attrs":{"text":"JQ282770","term_id":"383215071","term_text":"JQ282770"}}JQ282770 (Seg-1), {"type":"entrez-nucleotide","attrs":{"text":"JQ282771","term_id":"383215073","term_text":"JQ282771"}}JQ282771 (Seg-3), {"type":"entrez-nucleotide","attrs":{"text":"JQ282772","term_id":"383215075","term_text":"JQ282772"}}JQ282772 (Seg-4), {"type":"entrez-nucleotide","attrs":{"text":"JQ282773","term_id":"383215077","term_text":"JQ282773"}}JQ282773 (Seg-5), {"type":"entrez-nucleotide","attrs":{"text":"JQ282774","term_id":"383215079","term_text":"JQ282774"}}JQ282774 (Seg-7), {"type":"entrez-nucleotide","attrs":{"text":"JQ282775","term_id":"383215081","term_text":"JQ282775"}}JQ282775 (Seg-8), {"type":"entrez-nucleotide","attrs":{"text":"JQ282776","term_id":"383215083","term_text":"JQ282776"}}JQ282776 (Seg-9), and {"type":"entrez-nucleotide","attrs":{"text":"JQ282777","term_id":"383215085","term_text":"JQ282777"}}JQ282777 (Seg-10) [52]
• Chloroplast genome of Erycina pusilla, sequence accession JF_746994 [53]
• Danio rerio, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"JQ434101","term_id":"384872525","term_text":"JQ434101"}}JQ434101 [54]
• Enterococcal Bacteriophage SAP6, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"JF731128","term_id":"343411857","term_text":"JF731128"}}JF731128 [55]
• Eubenangee virus, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"JQ070376","term_id":"383513837","term_text":"JQ070376"}}JQ070376 through {"type":"entrez-nucleotide","attrs":{"text":"JQ070385","term_id":"383513855","term_text":"JQ070385"}}JQ070385 [56]
• Fujian/411-like viruses, sequence accession {"type":"entrez-nucleotide-range","attrs":{"text":"CY087969 to CY088568","start_term":"CY087969","end_term":"CY088568","start_term_id":"380506411","end_term_id":"380507803"}}CY087969 to CY088568 [57]
• Hantavirus Variant of Rio Mamoré Virus, Maripa Virus, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"JQ611712","term_id":"384382977","term_text":"JQ611712"}}JQ611712 (segment S), {"type":"entrez-nucleotide","attrs":{"text":"JQ611713","term_id":"384382979","term_text":"JQ611713"}}JQ611713 (segment M), and {"type":"entrez-nucleotide","attrs":{"text":"JQ611714","term_id":"384382981","term_text":"JQ611714"}}JQ611714 (segment L) [58]
• Pata virus, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"JQ070386","term_id":"383513857","term_text":"JQ070386"}}JQ070386 through {"type":"entrez-nucleotide","attrs":{"text":"JQ070395","term_id":"383513875","term_text":"JQ070395"}}JQ070395 [59]
• Porcine Circovirus 2, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"JQ413808","term_id":"383215164","term_text":"JQ413808"}}JQ413808 [60]
• Porcine Reproductive and Respiratory Syndrome Virus, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"JQ326271","term_id":"382929416","term_text":"JQ326271"}}JQ326271 [61]
• Streptococcus mutans Phage M102AD, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"DQ386162","term_id":"88698119","term_text":"DQ386162"}}DQ386162 [62]
• Tilligery virus, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"JQ070366","term_id":"383513817","term_text":"JQ070366"}}JQ070366 through {"type":"entrez-nucleotide","attrs":{"text":"JQ070375","term_id":"383513835","term_text":"JQ070375"}}JQ070375 [63]

     

Genome sequences of Bacteria and Archaea published outside of Standards in Genomic Sciences, June �C September 2011

The purpose of this table is to provide the community with a citable record of publications of ongoing genome sequencing projects that have led to a publication in the scientific literature. While our goal is to make the list complete, there is no guarantee that we may have omitted one or more publications appearing in this time frame. Readers and authors who wish to have publications added to this subsequent versions of this list are invited to provide the bibliometric data for such references to the SIGS editorial office.

• Phylum Crenarchaeota
• Phylum Euryarchaeota
• Pyrococcus yayanosii CH1, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP002779","term_id":"334899445","term_text":"CP002779"}}CP002779 [1]
• Methanocella paludicola, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AP011532","term_id":"282154984","term_text":"AP011532"}}AP011532 [2]
• Halorhabdus tiamatea, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AFNT00000000","term_id":"543102264","term_text":"AFNT00000000"}}AFNT00000000 [3]
• Thermococcus sp. Strain 4557, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP002920","term_id":"340808746","term_text":"CP002920"}}CP002920 [4]
• Phylum Chloroflexi
• Phylum Proteobacteria
• Ralstonia solanacearum strain Po82, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP002819","term_id":"334194119","term_text":"CP002819"}}CP002819 (chromosome) and {"type":"entrez-nucleotide","attrs":{"text":"CP002820","term_id":"334197458","term_text":"CP002820"}}CP002820 (megaplasmid) [5
• Desulfovibrio alaskensis G20, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP000112","term_id":"78217452","term_text":"CP000112"}}CP000112 [6]
• Methylophaga aminisulfidivorans MP^T, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AFIG00000000","term_id":"333790299","term_text":"AFIG00000000"}}AFIG00000000 [7]
• Acinetobacter sp. P8-3-8, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AFIE00000000","term_id":"333463740","term_text":"AFIE00000000"}}AFIE00000000 [8]
• Sphingomonas strain KC8, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AFMP01000000","term_id":"333609216","term_text":"gb||AFMP01000000"}}AFMP01000000 [9]
• Brucella pinnipedialis B2/94, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP002078","term_id":"340558088","term_text":"CP002078"}}CP002078 and {"type":"entrez-nucleotide","attrs":{"text":"CP002079","term_id":"340560226","term_text":"CP002079"}}CP002079 [10]
• Salmonella enterica Serovar Typhimurium UK-1, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP002614","term_id":"332986951","term_text":"CP002614"}}CP002614 (chromosome), {"type":"entrez-nucleotide","attrs":{"text":"CP002615","term_id":"332991407","term_text":"CP002615"}}CP002615 (plasmid) [11]
• Bordetella pertussis CS, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP002695","term_id":"332380677","term_text":"CP002695"}}CP002695 [12]
• Alteromonas sp. Strain SN2, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP002339","term_id":"332991508","term_text":"CP002339"}}CP002339 [13]
• Escherichia coli O104:H4, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AFOB00000000","term_id":"340742082","term_text":"AFOB00000000"}}AFOB00000000 ({"type":"entrez-nucleotide","attrs":{"text":"LB226692","term_id":"753016073","term_text":"LB226692"}}LB226692) and {"type":"entrez-nucleotide","attrs":{"text":"AFPS00000000","term_id":"340736249","term_text":"AFPS00000000"}}AFPS00000000 (01-09591) [14]
• Acidithiobacillus caldus, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP002573","term_id":"340554897","term_text":"CP002573"}}CP002573 (Chromosome), {"type":"entrez-nucleotide","attrs":{"text":"CP002574","term_id":"340557778","term_text":"CP002574"}}CP002574 (pLAtcm), {"type":"entrez-nucleotide","attrs":{"text":"CP002575","term_id":"340558034","term_text":"CP002575"}}CP002575 (pLAtc1), {"type":"entrez-nucleotide","attrs":{"text":"CP002576","term_id":"340558045","term_text":"CP002576"}}CP002576 (pLAtc2), {"type":"entrez-nucleotide","attrs":{"text":"CP002577","term_id":"340558059","term_text":"CP002577"}}CP002577 (pLAtc3) [15]
• Cupriavidus necator N-1, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP002877","term_id":"338164315","term_text":"CP002877"}}CP002877 (chromosome 1), {"type":"entrez-nucleotide","attrs":{"text":"CP002878","term_id":"338167938","term_text":"CP002878"}}CP002878 (chromosome 2), {"type":"entrez-nucleotide","attrs":{"text":"CP002879","term_id":"338170382","term_text":"CP002879"}}CP002879 (pBB1), and {"type":"entrez-nucleotide","attrs":{"text":"CP002880","term_id":"338171767","term_text":"CP002880"}}CP002880 (pBB2) [16]
• Oligotropha carboxidovorans OM4, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP002821","term_id":"336093334","term_text":"CP002821"}}CP002821 (OM4 chromosome), {"type":"entrez-nucleotide","attrs":{"text":"CP002822","term_id":"336096622","term_text":"CP002822"}}CP002822 (pHCG3b), {"type":"entrez-nucleotide","attrs":{"text":"CP002823","term_id":"336096746","term_text":"CP002823"}}CP002823 (pOC167B) [17]
• Oligotropha carboxidovorans OM5, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP002826","term_id":"336096911","term_text":"CP002826"}}CP002826 (OM5 chromosome), {"type":"entrez-nucleotide","attrs":{"text":"CP002827","term_id":"336100253","term_text":"CP002827"}}CP002827 (pHCG3), and {"type":"entrez-nucleotide","attrs":{"text":"CP002828","term_id":"336100378","term_text":"CP002828"}}CP002828 (pOC167) [17]
• Pantoea ananatis LMG20103, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP001875","term_id":"326698716","term_text":"CP001875"}}CP001875 [18]
• Helicobacter bizzozeronii strain CIII-1, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"FR871757","term_id":"335332259","term_text":"FR871757"}}FR871757 (chromosome) and {"type":"entrez-nucleotide","attrs":{"text":"FR871758","term_id":"335334154","term_text":"FR871758"}}FR871758 (HBZ-1) [19]
• Vibrio anguillarum 775, sequence accession {"type":"entrez-nucleotide-range","attrs":{"text":"CP002284 to CP002285","start_term":"CP002284","end_term":"CP002285","start_term_id":"335340310","end_term_id":"335343122"}}CP002284 to CP002285 [20]
• Zymomonas mobilis subsp. pomaceae, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP002865","term_id":"336293797","term_text":"CP002865"}}CP002865 (chromosome), {"type":"entrez-nucleotide","attrs":{"text":"CP002866","term_id":"336295481","term_text":"CP002866"}}CP002866 (p29192_1), {"type":"entrez-nucleotide","attrs":{"text":"CP002867","term_id":"336295515","term_text":"CP002867"}}CP002867 (p29192_2) [21]
• Agrobacterium sp. strain ATCC 31749, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AECL01000000","term_id":"333795931","term_text":"gb||AECL01000000"}}AECL01000000 [22]
• Xanthomonas spp. strain Xrc, sequence accesssion {"type":"entrez-nucleotide","attrs":{"text":"CP002789","term_id":"341934791","term_text":"CP002789"}}CP002789 [23]
• Xanthomonas spp. strain Xoc, sequence accesssion {"type":"entrez-nucleotide","attrs":{"text":"AAQN00000000","term_id":"94721237","term_text":"AAQN00000000"}}AAQN00000000 [23]
• Glaciecola sp. Strain 4H-3-7+YE-5, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP002526","term_id":"332171715","term_text":"CP002526"}}CP002526 (chromosome) and {"type":"entrez-nucleotide","attrs":{"text":"CP002527","term_id":"332175949","term_text":"CP002527"}}CP002527 (plasmid) [24]
• Escherichia coli Strain HM605, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CADZ01000001","term_id":"335324271","term_text":"CADZ01000001"}}CADZ01000001 through {"type":"entrez-nucleotide","attrs":{"text":"CADZ01000154","term_id":"335324105","term_text":"CADZ01000154"}}CADZ01000154 [25]
• Salinisphaera shabanensis, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AFNV00000000","term_id":"543113482","term_text":"AFNV00000000"}}AFNV00000000 [26]
• Methyloversatilis universalis FAM5^T, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AFHG00000000","term_id":"333445722","term_text":"AFHG00000000"}}AFHG00000000 [27]
• Alicycliphilus denitrificans Strain BC, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP002449","term_id":"317115299","term_text":"CP002449"}}CP002449 (chromosome), {"type":"entrez-nucleotide","attrs":{"text":"CP002450","term_id":"317119630","term_text":"CP002450"}}CP002450 (megaplasmid), {"type":"entrez-nucleotide","attrs":{"text":"CP002451","term_id":"317119756","term_text":"CP002451"}}CP002451 (plasmid) [28].
• Alicycliphilus denitrificans K601^T, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP002657","term_id":"329308025","term_text":"CP002657"}}CP002657 (chromosome) and {"type":"entrez-nucleotide","attrs":{"text":"CP002658","term_id":"329312633","term_text":"CP002658"}}CP002658 (plasmid) [28]
• Oligotropha carboxidovorans Strain OM4, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP002821","term_id":"336093334","term_text":"CP002821"}}CP002821 (chromosome), {"type":"entrez-nucleotide","attrs":{"text":"CP002822","term_id":"336096622","term_text":"CP002822"}}CP002822 (pHCG3b), {"type":"entrez-nucleotide","attrs":{"text":"CP002823","term_id":"336096746","term_text":"CP002823"}}CP002823 (pOC167B) [29]
• Oligotropha carboxidovorans Strain OM5, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP002826","term_id":"336096911","term_text":"CP002826"}}CP002826 (chromosome), {"type":"entrez-nucleotide","attrs":{"text":"CP002827","term_id":"336100253","term_text":"CP002827"}}CP002827 (pHCG3), and {"type":"entrez-nucleotide","attrs":{"text":"CP002828","term_id":"336100378","term_text":"CP002828"}}CP002828 (pOC167) [29]
• Bradyrhizobiaceae strain SG-6C, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AFOF01000000","term_id":"338235257","term_text":"gb||AFOF01000000"}}AFOF01000000 [30]
• Hyphomicrobium sp. Strain MC1, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"FQ859181","term_id":"337757426","term_text":"FQ859181"}}FQ859181 [31]
• Shewanella sp. Strain HN-41, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AFOZ01000000","term_id":"335867028","term_text":"gb||AFOZ01000000"}}AFOZ01000000 [32]
• Myxococcus fulvus HW-1, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP002830","term_id":"337255776","term_text":"CP002830"}}CP002830 [33]
• Nitrosomonas sp. Strain AL212, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"NC_015222","term_id":"325980881","term_text":"NC_015222"}}NC_015222 (chromosome), {"type":"entrez-nucleotide","attrs":{"text":"NC_015223","term_id":"325983714","term_text":"NC_015223"}}NC_015223 pNAL21201), {"type":"entrez-nucleotide","attrs":{"text":"NC_015221","term_id":"325980815","term_text":"NC_015221"}}NC_015221 (pNAL21202) [34]
• Ruegeria sp. Strain KLH11, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"ACCW00000000","term_id":"218703200","term_text":"ACCW00000000"}}ACCW00000000 [35]
• Acidovorax avenae subsp. avenae RS-1, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AFPT01000000","term_id":"336283372","term_text":"gb||AFPT01000000"}}AFPT01000000 [36]
• Escherichia coli (ExPEC), sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AFAT00000000","term_id":"338771881","term_text":"AFAT00000000"}}AFAT00000000 [37]
• Vibrio mimicus SX-4, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"ADOO01000000","term_id":"340396595","term_text":"gb||ADOO01000000"}}ADOO01000000 [38]
• Agrobacterium tumefaciens Strain F2, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AFSD00000000","term_id":"338825258","term_text":"AFSD00000000"}}AFSD00000000 [39]
• Pasteurella multocida subsp. gallicida {"type":"entrez-nucleotide-range","attrs":{"text":"AFRR01000001 to AFRR01000489","start_term":"AFRR01000001","end_term":"AFRR01000489","start_term_id":"338220663","end_term_id":"338215299"}}AFRR01000001 to AFRR01000489 [40]
• Pseudomonas aeruginosa 138244, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AEVV00000000","term_id":"537462489","term_text":"AEVV00000000"}}AEVV00000000 [41]
• Pseudomonas aeruginosa 152504, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AEVW00000000","term_id":"557220721","term_text":"AEVW00000000"}}AEVW00000000 [41]
• Campylobacter jejuni strain 305, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"ADHL00000000","term_id":"315930937","term_text":"ADHL00000000"}}ADHL00000000 [42]
• Campylobacter jejuni strain DFVF1099, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"ADHK00000000","term_id":"315928465","term_text":"ADHK00000000"}}ADHK00000000 [42]
• Xanthomonas campestris pv. raphani strain 756C, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP002789","term_id":"341934791","term_text":"CP002789"}}CP002789 [43]
• Xanthomonas campestris pv. raphani strain BLS256, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AAQN01000001","term_id":"94721236","term_text":"AAQN01000001"}}AAQN01000001 [43]
• Rickettsia heilongjiangensis, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP002912","term_id":"340807448","term_text":"CP002912"}}CP002912 [44]
• Acidiphilium sp. Strain PM (DSM 24941), sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AFPR00000000","term_id":"338209258","term_text":"AFPR00000000"}}AFPR00000000 [45]
• Pseudomonas putida Strain S16, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP002870","term_id":"338835784","term_text":"CP002870"}}CP002870 [46]
• Acinetobacter lwoffii, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AFQY01000000","term_id":"337752636","term_text":"gb||AFQY01000000"}}AFQY01000000 [47]
• Phylum Firmicutes
• Caldalkalibacillus thermarum strain TA2.A1, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AFCE00000000","term_id":"334181820","term_text":"AFCE00000000"}}AFCE00000000 [48]
• Listeria monocytogenes Scott A, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AFGI00000000","term_id":"332188986","term_text":"AFGI00000000"}}AFGI00000000 [49]
• Lactococcus garvieae 8831, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AFCD00000000","term_id":"333218454","term_text":"AFCD00000000"}}AFCD00000000 [50]
• Natranaerobius thermophilus JW/NM-WN-LF, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP001034","term_id":"179349329","term_text":"CP001034"}}CP001034 (chromosome), {"type":"entrez-nucleotide","attrs":{"text":"CP001035","term_id":"179352354","term_text":"CP001035"}}CP001035 (plasmid) [51]
• Melissococcus plutonius ATCC 35311, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AP012200","term_id":"332369543","term_text":"AP012200"}}AP012200 (chromosome) and {"type":"entrez-nucleotide","attrs":{"text":"AP012201","term_id":"332371286","term_text":"AP012201"}}AP012201 (plasmid) [52]
• Lactobacillus buchneri NRRL B-30929, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP002652","term_id":"329127738","term_text":"CP002652"}}CP002652 (chromosome), {"type":"entrez-nucleotide","attrs":{"text":"CP002653","term_id":"329130053","term_text":"CP002653"}}CP002653 (plasmid pLBU01), {"type":"entrez-nucleotide","attrs":{"text":"CP002654","term_id":"329130100","term_text":"CP002654"}}CP002654 (plasmid pLBU02), and {"type":"entrez-nucleotide","attrs":{"text":"CP002655","term_id":"329130119","term_text":"CP002655"}}CP002655 (plasmid pLBU03) [53]
• Lactobacillus kefiranofaciens ZW3 , sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP002764","term_id":"333956887","term_text":"CP002764"}}CP002764 (chromosome), {"type":"entrez-nucleotide","attrs":{"text":"CP002765","term_id":"333958796","term_text":"CP002765"}}CP002765 (plasmid), and {"type":"entrez-nucleotide","attrs":{"text":"CP002766","term_id":"333958996","term_text":"CP002766"}}CP002766 (plasmid) [54]
• Bacillus megaterium strain QM B1551, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP001983","term_id":"294346812","term_text":"CP001983"}}CP001983 (chromosome), {"type":"entrez-nucleotide-range","attrs":{"text":"CP001984 to CP001990","start_term":"CP001984","end_term":"CP001990","start_term_id":"294351929","end_term_id":"294352220"}}CP001984 to CP001990 (plasmids pBM100 through pBM700) [55]
• Bacillus megaterium strain DSM319, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP001982","term_id":"294799901","term_text":"CP001982"}}CP001982 (chromosome) [55]
• Listeria monocytogenes serovar 4a strain M7, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP002816","term_id":"336021869","term_text":"CP002816"}}CP002816 [56]
• Bacillus coagulans 2-6, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP002472","term_id":"335366109","term_text":"CP002472"}}CP002472 [57]
• Streptococcus salivarius strain CCHSS3, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"FR873481","term_id":"338741860","term_text":"FR873481"}}FR873481 [58]
• Paenibacillus elgii B69, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AFHW01000000","term_id":"332713477","term_text":"gb||AFHW01000000"}}AFHW01000000 [59]
• Lactobacillus pentosus MP-10, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"FR871759","term_id":"334880280","term_text":"FR871759"}}FR871759 through {"type":"entrez-nucleotide","attrs":{"text":"FR871848","term_id":"334883124","term_text":"FR871848"}}FR871848 [60]
• Leuconostoc pseudomesenteroides KCTC 3652, sequence accession AEOQ00000001 through AEOQ00001160 [61]
• Lactobacillus mali KCTC 3596, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"BACP01000001","term_id":"338747920","term_text":"BACP01000001"}}BACP01000001 through {"type":"entrez-nucleotide","attrs":{"text":"BACP01000122","term_id":"338747799","term_text":"BACP01000122"}}BACP01000122 [62]
• Paenibacillus polymyxa Type Strain ATCC 842^T, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AFOX01000000","term_id":"335355762","term_text":"gb||AFOX01000000"}}AFOX01000000 [63]
• Streptococcus salivarius strain JIM8777, sequence accssion {"type":"entrez-nucleotide","attrs":{"text":"FR873482","term_id":"338744031","term_text":"FR873482"}}FR873482 [64]
• Lactobacillus cypricasei KCTC 13900, sequence accession {"type":"entrez-nucleotide-range","attrs":{"text":"BACS01000001 to BACS01000487","start_term":"BACS01000001","end_term":"BACS01000487","start_term_id":"338748625","end_term_id":"338748139"}}BACS01000001 to BACS01000487 [65]
• Lactobacillus zeae KCTC 3804, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"BACQ01000001","term_id":"338748035","term_text":"BACQ01000001"}}BACQ01000001 to BACQ101000113 [66]
• Listeria monocytogenes Serovar 4a Strain M7, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP002816","term_id":"336021869","term_text":"CP002816"}}CP002816 [67]
• Lactobacillus salivarius GJ-24, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AFOI00000000","term_id":"335351482","term_text":"AFOI00000000"}}AFOI00000000 [68]
• Lactobacillus johnsonii PF01, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AFQJ01000000","term_id":"338762788","term_text":"gb||AFQJ01000000"}}AFQJ01000000 [69]
• Clostridium acetobutylicum DSM 1731, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP002660","term_id":"336289872","term_text":"CP002660"}}CP002660 through {"type":"entrez-nucleotide","attrs":{"text":"CP002662","term_id":"336293787","term_text":"CP002662"}}CP002662 [70]
• Lactobacillus suebicus KCTC 3549, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"BACO01000000","term_id":"338746125","term_text":"dbj||BACO01000000"}}BACO01000000 [71]
• Brevibacillus laterosporus LMG 15441, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AFRV00000000","term_id":"338776733","term_text":"AFRV00000000"}}AFRV00000000 [72]
• Lactobacillus salivarius NIAS840, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AFMN00000000","term_id":"334308865","term_text":"AFMN00000000"}}AFMN00000000 [73]
• Bifidobacterium animalis subsp. lactis CNCM I-2494, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP002915","term_id":"340364148","term_text":"CP002915"}}CP002915 [74]
• Megasphaera elsdenii, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"HE576794","term_id":"341821300","term_text":"HE576794"}}HE576794 [75]
• Lactobacillus versmoldensis KCTC 3814, sequence accession {"type":"entrez-nucleotide-range","attrs":{"text":"BACR01000001 to BACR01000102","start_term":"BACR01000001","end_term":"BACR01000102","start_term_id":"338748138","end_term_id":"338748037"}}BACR01000001 to BACR01000102 [76]
• Lactobacillus pentosus IG1, sequence accession {"type":"entrez-nucleotide-range","attrs":{"text":"FR874848 to FR874860","start_term":"FR874848","end_term":"FR874860","start_term_id":"339636574","end_term_id":"339639349"}}FR874848 to FR874860 [77]
• Alicyclobacillus acidocaldarius Strain Tc-4-1, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP002902","term_id":"339287872","term_text":"CP002902"}}CP002902 [78]
• Streptococcus thermophilus Strain JIM8232, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"FR875178","term_id":"339277069","term_text":"FR875178"}}FR875178 [79]
• Streptococcus equi subsp. zooepidemicus Strain ATCC 35246, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP002904","term_id":"338846021","term_text":"CP002904"}}CP002904 [80]
• Bacillus amyloliquefaciens XH7, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP002927","term_id":"341825903","term_text":"CP002927"}}CP002927 [81]
• Leuconostoc kimchii Strain C2, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP002898","term_id":"338851854","term_text":"CP002898"}}CP002898 [82]
• Lactobacillus malefermentans KCTC 3548, sequence accession {"type":"entrez-nucleotide-range","attrs":{"text":"BACN01000001 to BACN01000172","start_term":"BACN01000001","end_term":"BACN01000172","start_term_id":"338736862","end_term_id":"338736691"}}BACN01000001 to BACN01000172 [83]
• Weissella koreensis KACC 15510, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP002900","term_id":"338855046","term_text":"CP002900"}}CP002900 [84]
• Phylum Tenericutes
• Mycoplasma bovis Strain Hubei-1, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP002513","term_id":"338226653","term_text":"CP002513"}}CP002513 [85]
• Mycoplasma fermentans Strain M64, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"NC_014921","term_id":"319776738","term_text":"NC_014921"}}NC_014921 [86]
• Haloplasma contractile, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AFNU00000000","term_id":"543107448","term_text":"AFNU00000000"}}AFNU00000000 [87]
• Mycoplasma ovipneumoniae Strain SC01, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AFHO01000000","term_id":"336091059","term_text":"gb||AFHO01000000"}}AFHO01000000 [88]
• Phylum Actinobacteria
• Kocuria rhizophila P7-4, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AFID00000000","term_id":"333463600","term_text":"AFID00000000"}}AFID00000000 [89]
• Streptomyces S4, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CADY01000000","term_id":"334306078","term_text":"emb||CADY01000000"}}CADY01000000 [90]
• Corynebacterium nuruki S6-4^T, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AFIZ00000000","term_id":"333352007","term_text":"AFIZ00000000"}}AFIZ00000000 [91]
• Propionibacterium humerusii, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AFAM00000000.1","term_id":"328908381","term_text":"AFAM00000000.1"}}AFAM00000000.1 [92]
• Strain JDM601, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP002329","term_id":"333484608","term_text":"CP002329"}}CP002329 [93]
• Streptomyces sp. strain Tü6071, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AFHJ01000000","term_id":"332514755","term_text":"gb||AFHJ01000000"}}AFHJ01000000 [94]
• Bifidobacterium breve UCC2003, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP000303","term_id":"339478266","term_text":"CP000303"}}CP000303 [95]
• Propionibacterium acnes, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP002815","term_id":"335276409","term_text":"CP002815"}}CP002815 [96]
• Amycolicicoccus subflavus DQS3-9A1^T, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP002786","term_id":"333479900","term_text":"CP002786"}}CP002786 (chromosome), {"type":"entrez-nucleotide","attrs":{"text":"CP002787","term_id":"333484458","term_text":"CP002787"}}CP002787 (plasmid pAS9A-1), and {"type":"entrez-nucleotide","attrs":{"text":"CP002788","term_id":"333484486","term_text":"CP002788"}}CP002788 (plasmid pAS9A-2). [97]
• Gordonia neofelifaecis NRRL B-59395, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AEUD01000000","term_id":"326199990","term_text":"gb||AEUD01000000"}}AEUD01000000 [98]
• Pseudonocardia dioxanivorans strain CB1190, sequence accession NC_015312-4 and CP002595-7 [99]
• Bifidobacterium longum subsp. longum KACC 91563, sequence accession {"type":"entrez-nucleotide-range","attrs":{"text":"CP002794 to CP002796","start_term":"CP002794","end_term":"CP002796","start_term_id":"338753582","end_term_id":"338755560"}}CP002794 to CP002796 [100]
• Streptomyces cattleya NRRL 8057, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"FQ859185","term_id":"337764029","term_text":"FQ859185"}}FQ859185 (chromosome) and {"type":"entrez-nucleotide","attrs":{"text":"FQ859184","term_id":"337762320","term_text":"FQ859184"}}FQ859184 (megaplasmid) [101]
• Rhodococcus sp. Strain R04, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AFAQ01000000","term_id":"338230982","term_text":"gb||AFAQ01000000"}}AFAQ01000000 [102]
• Mycobacterium bovis BCG Moreau, sequence accession [103]
• Saccharopolyspora spinosa NRRL 18395, sequence accession [104]
• Mycobacterium tuberculosis CCDC5079, sequence accession [105]
• Mycobacterium tuberculosis CCDC5180, sequence accession [105]
• Amycolatopsis mediterranei S699, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP002896","term_id":"340523290","term_text":"CP002896"}}CP002896 [106]
• Nesterenkonia sp. Strain F, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AFRW01000000","term_id":"340539543","term_text":"gb||AFRW01000000"}}AFRW01000000 [107]
• Streptomyces xinghaiensis NRRL {"type":"entrez-nucleotide","attrs":{"text":"B24674","term_id":"2510184","term_text":"B24674"}}B24674^T, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AFRP01000000","term_id":"339790456","term_text":"gb||AFRP01000000"}}AFRP01000000 [108]
• Phylum Chlamydiae
• Chlamydophila abortus variant strain LLG, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AFHM01000000","term_id":"1154501422"}}AFHM01000000 [109]
• Chlamydia psittaci 6BC, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP002586","term_id":"328914189","term_text":"CP002586"}}CP002586 (chromosome), {"type":"entrez-nucleotide","attrs":{"text":"CP002587","term_id":"328915192","term_text":"CP002587"}}CP002587 (plasmid) [110]
• Chlamydia psittaci Cal10, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AEZD00000000","term_id":"328815518","term_text":"AEZD00000000"}}AEZD00000000 (draft chromosome and plasmid) [110]
• Chlamydia trachomatis, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP002024","term_id":"339460423","term_text":"CP002024"}}CP002024 [111]
• Phylum Spirochaetes
• Spirochaeta thermophila DSM 6192, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP001698","term_id":"306531442","term_text":"CP001698"}}CP001698 [112]
• Brachyspira intermedia, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP002874","term_id":"343385146","term_text":"CP002874"}}CP002874 (chromosome) and {"type":"entrez-nucleotide","attrs":{"text":"CP002875","term_id":"343388016","term_text":"CP002875"}}CP002875 (plasmid) [113]
• Phylum Fibrobacteres
• Phylum Bacteroidetes
• Porphyromonas gingivalis TDC60, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AP012203","term_id":"333802964","term_text":"AP012203"}}AP012203 [114]
• Krokinobacter sp. strain 4H-3-7-5, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP002528","term_id":"332168736","term_text":"CP002528"}}CP002528 [115]
• Lacinutrix sp. strain 5H-3-7-4, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP002825","term_id":"334725715","term_text":"CP002825"}}CP002825 [115]
• Bacterium HQM9, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AFPB00000000","term_id":"336042206","term_text":"AFPB00000000"}}AFPB00000000 [116]
• Anaerophaga sp. Strain HS1, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AFSL00000000","term_id":"339506355","term_text":"AFSL00000000"}}AFSL00000000 [117]
• Capnocytophaga canimorsus Strain 5, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP002113","term_id":"339901044","term_text":"CP002113"}}CP002113 [118]
• Mesoflavibacter zeaxanthinifaciens strain S86, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AFOE00000000","term_id":"339831579","term_text":"AFOE00000000"}}AFOE00000000 [119]
• Phylum Verrucomicrobia
• Phylum Lentisphaerae
• Phylum Thermotogae
• Kosmotoga olearia Strain TBF 19.5.1, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP001634","term_id":"239505242","term_text":"CP001634"}}CP001634 [120]
• Domain Archaea
• "Candidatus Nitrosoarchaeum koreensis" MY1, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"AFPU00000000","term_id":"339521013","term_text":"AFPU00000000"}}AFPU00000000 [121]

Non-Bacterial genomes

• North-European Cucumber Cucumis sativus L., sequence accession {"type":"entrez-nucleotide-range","attrs":{"text":"FI132140-FI136208","start_term":"FI132140","end_term":"FI136208","start_term_id":"192759773","end_term_id":"192763063"}}FI132140-FI136208, {"type":"entrez-nucleotide-range","attrs":{"text":"GS765762-GS766880","start_term":"GS765762","end_term":"GS766880","start_term_id":"269146953","end_term_id":"269148071"}}GS765762-GS766880, {"type":"entrez-nucleotide-range","attrs":{"text":"GS815969-GS874855","start_term":"GS815969","end_term":"GS874855","start_term_id":"282718378","end_term_id":"282698342"}}GS815969-GS874855 [122]
• Castor bean Ricinus communis organelle genome, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"JF937588","term_id":"339516144","term_text":"JF937588"}}JF937588(chloroplast), {"type":"entrez-nucleotide","attrs":{"text":"HQ874649","term_id":"322394252","term_text":"HQ874649"}}HQ874649 (mitochondria) [123]
• Stretch Lagoon Orbivirus Umatilla, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"HQ842619","term_id":"332713884","term_text":"HQ842619"}}HQ842619 through {"type":"entrez-nucleotide","attrs":{"text":"HQ842628","term_id":"332713902","term_text":"HQ842628"}}HQ842628 [124]
• Atlantic cod Gadus morhua, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CAEA01000001","term_id":"344901723","term_text":"CAEA01000001"}}CAEA01000001 through {"type":"entrez-nucleotide","attrs":{"text":"CAEA01554869","term_id":"344345641","term_text":"CAEA01554869"}}CAEA01554869 [125]
• Potato Solanum tuberosum L., sequence accession {"type":"entrez-nucleotide","attrs":{"text":"GS025503","term_id":"255349557","term_text":"GS025503"}}GS025503 through {"type":"entrez-nucleotide","attrs":{"text":"GS026177","term_id":"255350231","term_text":"GS026177"}}GS026177 [126]
• ΦCA82, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"HQ264138","term_id":"311336635","term_text":"HQ264138"}}HQ264138 [127]
• Paramecium caudatumreveals mitochondria, sequence accession NC001324 [128]
• bacteriophage IME08, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"NC_014260","term_id":"299778956","term_text":"NC_014260"}}NC_014260 [129]
• virus (ILTV), sequence accession HQ_630064 [130]
• Australian kangaroo Macropus eugenii, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"ABQO000000000","term_id":"377520186","term_text":"ABQO000000000"}}ABQO000000000 [131]
• Aichi virus, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"FJ890523","term_id":"260176795","term_text":"FJ890523"}}FJ890523 [132]
• "Candidatus Tremblaya princeps" Strain PCVAL, sequence accession {"type":"entrez-nucleotide","attrs":{"text":"CP002918","term_id":"340536387","term_text":"CP002918"}}CP002918 [133]