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1.
Hubbe M Torres-Rouff C Neves WA King LM Da-Gloria P Costa MA 《American journal of physical anthropology》2012,148(1):62-72
As one of the few areas apt for horticulture in Northern Chile's arid landscape, the prehistory of the Atacama oases is deeply enmeshed with that of the inter‐regional networks that promoted societal development in the south central Andes. During the Middle Horizon (AD 500–1000), local populations experienced a cultural apex associated with a substantial increase in inter‐regional interaction, population density, and quantity and quality of mortuary assemblages. Here, we test if this cultural peak affected dietary practices equally among the distinct local groups of this period. We examine caries prevalence and the degree of occlusal wear in four series recovered from three cemeteries. Our results show a reduction in the prevalence of caries for males among an elite subsample from Solcor 3 and the later Coyo 3 cemeteries. Dental wear tends to increase over time with the Late Middle Horizon/Late Intermediate Period cemetery of Quitor 6 showing a higher average degree of wear. When considered in concert with archaeological information, we concluded that the Middle Horizon was marked by dietary variability wherein some populations were able to obtain better access to protein sources (e.g., camelid meat). Not all members of Atacameño society benefited from this, as we note that this dietary change only affected men. Our results suggest that the benefits brought to the San Pedro oases during the Middle Horizon were not equally distributed among local groups and that social status, relationship to the Tiwanaku polity, and interment in particular cemeteries affected dietary composition. Am J Phys Anthropol, 2012. © 2012 Wiley Periodicals, Inc. 相似文献
2.
CHRISTINA TORRES-ROUFF 《American anthropologist》2008,110(3):325-337
ABSTRACT Using a contextualized bioarchaeological framework, in this article, I examine the complex relationship between the Tiwanaku polity of the Bolivian altiplano (C.E. 550–1000) and the inhabitants of the San Pedro de Atacama oases of northern Chile, in Tiwanaku's far periphery. I focus on how influences from Tiwanaku might have affected the presentation of Atacameño group identity in the mortuary context. I compare skeletal and mortuary data from 300 individuals buried during the peak of Tiwanaku influence in the Atacama to assess mortuary context, trauma, and body modifications. Results suggest a complex response to Tiwanaku influence. Data from the grave and mortuary assemblage reveal traditional Atacameño tombs with occasional foreign objects. Evidence of increased traumatic injury suggests that this relationship was not without some conflict. Finally, the maintenance of bodily expressions of local identity indicates a society that used their bodies to mark Atacameño identity. 相似文献
3.
Kelly J. Knudson Christina Torres‐Rouff Christopher M. Stojanowski 《American journal of physical anthropology》2015,157(2):179-201
Bioarchaeological approaches are well suited for examining past responses to political and environmental changes. In the Andes, we hypothesized that political and environmental changes around AD 1100 resulted in behavioral changes, visible as shifts in paleodiet and paleomobility, among individuals in the San Pedro de Atacama oases and Loa River Valley. To investigate this hypothesis, we generated carbon and oxygen isotope data from cemeteries dating to the early Middle Horizon (Larache, Quitor‐5, Solor‐3), late Middle Horizon (Casa Parroquial, Coyo Oriental, Coyo‐3, Solcor‐Plaza, Solcor‐3, Tchecar), and Late Intermediate Period (Caspana, Quitor‐6 Tardío, Toconce, Yaye‐1, Yaye‐2, Yaye‐3, Yaye‐4). Carbon isotope data demonstrate a greater range of carbon sources during the late Middle Horizon compared with the Late Intermediate Period; while most individuals consumed largely C3 sources, some late Middle Horizon individuals consumed more C4 sources. Oxygen isotope data demonstrate greater diversity in drinking water sources during the late Middle Horizon compared with the Late Intermediate Period. Water samples were analyzed to provide baseline data on oxygen isotope variability within the Atacama Desert, and demonstrated that oxygen isotope values are indistinguishable in the San Pedro and Loa Rivers. However, oxygen isotope values in water sources in the high‐altitude altiplano and coast are distinct from those in the San Pedro and Loa Rivers. In conclusion, instead of utilizing a wider variety of resources after environmental and political changes, individuals exhibited a wider range of paleodietary and paleomobility strategies during the Middle Horizon, a period of environmental and political stability. Am J Phys Anthropol 157:179–201, 2015. © 2015 Wiley Periodicals, Inc. 相似文献
4.
The peopling of the south-central Andean region can be determined by exploring a combination of cultural, economic, and biological factors that influence the structure of populations and determine particular dispersals of gene frequencies. Quantitative characters from 1,586 adult crania of both sexes from northern Chile, northwestern Argentina, and the Cochabamba valleys in Bolivia were analyzed employing multivariate statistical analyses. Biological distances, representing phenotypic variation between these regions and their subregions, were studied within a population genetics framework. An analysis of Mahalanobis D(2) distances establishes two principle directions of interaction: the first between the Cochabamba valleys and northern Chile, and the second between the Cochabamba region and northwestern Argentina. The Chile and Argentina regions are shown to be less related to each other than each is to the Bolivian region. A higher mean genetic divergence is found for the entire region (F(ST) = 0.195); with northwestern Argentina having the highest spatial isolation (F(ST) = 0.143) and northern Chile the lowest (F(ST) = 0.061). These results allow us to propose a populating model based on the dispersion of several lines from a common ancestral population similar to those who inhabited the Cochabamba valleys. These lines differentiated themselves in time and space according to the effective size and the rate of gene flow, eventually producing the human groups which inhabited the valleys of northern Chile and northwestern Argentina. 相似文献
5.
Gabriele Gentile Valerio Sbordoni 《Evolution; international journal of organic evolution》1998,52(2):432-442
We estimateci gene flow among several populations of the troglophilic woodlouse Androniscus dentiger from central Italy using allozyme data. Estimates of gene flow were obtained from GST, θ, and the private alleles method, after being tested whether the assumption of the population genetic model and the assumption of neutrality of alleles had been met. Hierarchical analysis of gene flow has been used to investigate the geographic scale at which gene exchange can actually occur. Results showed that, independent of the methods, no ongoing gene flow can be detected among populations, even among geographically proximate ones. Genetic drift is likely the main agent shaping the pattern of genetic divergence among these populations. Patterns of past and ongoing gene flow were considered, as surface populations have become genetically isolated more recently than cave populations. In general, all three methods to estimate gene flow provided Nm estimates of the same magnitude. 相似文献
6.
Analyses of genomewide polymorphism data have begun to shed light on speciation and adaptation. Genome scans to identify regions of the genome that are unusually different between populations or species, possibly due to divergent natural or sexual selection, are widespread in speciation genomics. Theoretical and empirical work suggests that such outlier regions may grow faster than linearly during speciation with gene flow due to a rapid transition between low and high reproductive isolation. We investigate whether this pattern could be attributed to neutral processes by simulating genomes under neutral evolution with varying amounts and timing of gene flow. Under both neutral evolution and divergent selection, simulations with little or no gene flow, or with a long allopatric period after its cessation, resulted in faster than linear growth of the proportion of the genome lying in outlier regions. Without selection, higher recent gene flow erased differentiation; with divergent selection, these same scenarios produced nonlinear growth to a plateau. Our results suggest that, given a history of gene flow, the growth of the divergent genome is informative about selection during divergence, but that in many scenarios, this pattern does not easily distinguish neutral and non‐neutral processes during speciation with gene flow. 相似文献
7.
Watson JT 《American journal of physical anthropology》2008,135(1):92-99
Crown dimensions and occlusal surface wear rate and wear plane were evaluated using paired first and second mandibular molars from a sample of 84 Early Agricultural period (1600 B.C.-A.D. 200) skeletons from northwest Mexico. Although this period represents a major shift in subsistence strategies in the Sonoran Desert, from food-foraging to agriculture, archaeological and dental pathology studies have identified this period as one of relative dietary stability. It was therefore predicted that very little variation in occlusal wear would have occurred between the early phase (San Pedro: 1600-800 B.C.) and late phase (Cienega: 800 B.C.-A.D. 200). Comparison of crown diameters identified some phenotypic differences between sexes but not between archaeological phases. Molar occlusal surfaces were then divided into four quadrants, and wear scores recorded for each quadrant. Principle axis analysis was performed between total wear scores of paired, adjacent first and second mandibular molars to assess rate and occlusal wear plane over time. The analysis demonstrated that both wear rate and wear plane increased from the early to the late phase of the Early Agricultural period. These results indicate that although diet may have indeed remained stable during this period in the Sonoran Desert increases in the rate of wear and wear plane may reflect changes in food-processing techniques. It is suggested that more intensive processing of agricultural products during the Cienega phase simultaneously softened the diet to create more tooth-contact wear and introduced more grit to cause faster and more angled wear on the molar occlusal surfaces. 相似文献
8.
理解物种形成机制是生态和进化领域的重要任务。得益于测序技术的快速发展, 越来越多研究发现分化种群(亚种、物种)间的基因组常呈现异质性分化景观, 存在分化基因组岛, 这被认为是基因流存在下的歧化选择引起的, 支持基因流存在下的成种假说。然而, 基因渐渗、祖先多态性的差异分选、连锁选择等其他进化过程也可导致分化基因组岛的形成。现有实证研究在解析分化基因组岛的形成机制时, 往往忽略了上述其他进化过程的作用。为此, 本文在辨析分化基因组岛相关概念的基础上, 总结了利用种群基因组数据鉴定分化基因组岛的方法, 对比了不同进化过程形成分化基因组岛的特征, 指出在区分不同机制时联用基因渐渗程度、绝对分化指数(dXY)、相对节点深度(RND)、重组率等多个指标的必要性, 归纳了物种形成过程中分化基因组岛形成机制解析的研究思路, 并对未来在生殖隔离机制上的深入探索以及实证研究的整合分析等方面进行了展望。 相似文献
9.
Don Maurer Douglas Diener George Robertson Mike Mengel Tom Gerlinger 《International Review of Hydrobiology》1998,83(4):311-334
Temporal and spatial changes of epibenthic macroinvertebrates (EMI) were described from a ten-year (1985–1995) trawl study on the San Pedro Shelf, California. Community measures including number of species, individuals, biomass, dominance (DI), evenness (J'), and diversity (H' and SR) per trawl were computed for eight trawl stations representing four isobaths. Two reference stations and a test station (located at an ocean outfall) were featured in statistical analyses examining whether the outfall had any effect on EMI. During the ten-year period 127,389 individuals provided 106 EMI taxa. Water depth was the most important factor affecting EMI composition. Although some statistically significant differences in EMI community measures among trawl stations were found. differences between the outfall and both reference stations were either insignificant or inconsistent, providing no obvious ecological impacts attributable to the outfall. 相似文献
10.
Muir G Dixon CJ Harper AL Filatov DA 《Evolution; international journal of organic evolution》2012,66(5):1447-1458
The mechanics of speciation with gene flow are still unclear. Disparity among genes in population differentiation (F(ST)) between diverging species is often interpreted as evidence for semipermeable species boundaries, with selection preventing \"key\" genes from introgressing despite ongoing gene flow. However, F(ST) can remain high before it reaches equilibrium between the lineage sorting of species divergence and the homogenizing effects of gene flow (via secondary contact). Thus, when interpreting F(ST), the dynamics of drift, gene flow, and selection need to be taken into account. We illustrate this view with a multigenic analyses of gene flow and selection in three closely related Silene species, S. latifolia, S. dioica, and S. diclinis. We report that although S. diclinis appears to have evolved in allopatry, isolation with (bidirectional) gene flow between S. latifolia and S. dioica is likely, perhaps as a result of parapatric speciation followed by more extensive sympatry. Interestingly, we detected the signatures of apparently independent instances of positive selection at the same locus in S. latifolia and S. dioica. Despite gene flow between the species, the adaptive alleles have not crossed the species boundary, suggesting that this gene has independently undergone species-specific (diversifying or parallel) selection. 相似文献
11.
Species as evolutionary lineages are expected to show greater evolutionary independence from one another than are populations within species. Two measures of evolutionary independence that stem from the study of isolation-with-migration models, one reflecting the amount of gene exchange and one reflecting the time of separation, were drawn from the literature for a large number of pairs of closely related species and pairs of populations within species. Both measures, for gene flow and time, showed broadly overlapping distributions for pairs of species and for pairs of populations within species. Species on average show more time and less gene flow than populations, but the similarity of the distributions argues against there being a qualitative difference associated with species status, as compared to populations. The two measures of evolutionary independence were similarly correlated with F(ST) estimates, which in turn also showed similar distributions for species comparisons relative to population comparisons. The measures of gene flow and separation time were examined for the capacity to discriminate intraspecific differences from interspecific differences. If used together, the two measures could be used to develop an objective (in the sense of being repeatable) measure for species diagnosis. 相似文献
12.
A number of expeditions to the area of Salar de Atacama, Chile, 68° 15'W, 20° 30'S, have involved studies of the biological and chemical features of Lake Tebenquiche, situated in the interior of the salar. Chemically, Tebenquiche is hypersaline, with practically anoxic waters dominated by sodium and chloride ions but with high concentrations of sulphate also. The lake is surrounded and invaded by macrophytes, dominated by Scirpus olmeyi and Juncus, which provide organic material for the formation of bacterial mats. The fauna of limnetic crustaceans is almost exclusively of Artemia salina. The most important genera of bacteria are: Marinomonas, Halobacterium, Acinetobacter and the sulphur reductors Vibrio and Bacillus. The Cyanobacteria are represented exclusively by Oscillatoria. 相似文献
13.
Bacteria and the Enhancement of Oil Recovery. V. Moses and D. G. Springham. Applied Science Publishers, Ltd., London, New Jersey, 1982. With 1 figure and 1 table, xi + 178 p. Hardcover. $32.00 Phanerozoic Stromatolites. Case Histories C. Monty (Editor). Springer Verlag, Berlin, Heidelberg, New York, 1981. 249 pp., $52.60. Symbiosis in Cell Evolution. Life and Its Environment on the Early Earth. Lynn Margulis. W.H. Freeman and Company, San Francisco, 1981. 419 pp. $24.50 hardcover, $14.95 paperback. The Flavobacterium‐Cytophaga group. Edited by H. Reichen‐bach and O.B. Weeks. GBF Monograph Series, No. 5. Verlag Chemie International, Deerfield Beach, Weinheim, Basel, 1981. xiii, 217 pages with 38 figures and 75 tables. Paperback. $55.00. 相似文献
14.
Evolutionary diversification is often initiated by adaptive divergence between populations occupying ecologically distinct environments while still exchanging genes. The genetic foundations of this divergence process are largely unknown and are here explored through genome scans in multiple independent lake-stream population pairs of threespine stickleback. We find that across the pairs, overall genomic divergence is associated with the magnitude of divergence in phenotypes known to be under divergent selection. Along this same axis of increasing diversification, genomic divergence becomes increasingly biased towards the centre of chromosomes as opposed to the peripheries. We explain this pattern by within-chromosome variation in the physical extent of hitchhiking, as recombination is greatly reduced in chromosome centres. Correcting for this effect suggests that a great number of genes distributed widely across the genome are involved in the divergence into lake vs. stream habitats. Analyzing additional allopatric population pairs, however, reveals that strong divergence in some genomic regions has been driven by selection unrelated to lake-stream ecology. Our study highlights a major contribution of large-scale variation in recombination rate to generating heterogeneous genomic divergence and indicates that elucidating the genetic basis of adaptive divergence might be more challenging than currently recognized. 相似文献
15.
16.
Tania Chavarria‐Pizarro Juan Pablo Gomez Judit Ungvari‐Martin Rachael Bay Michael M. Miyamoto Rebecca Kimball 《Ecology and evolution》2019,9(24):13902-13918
Despite the enormous advances in genetics, links between phenotypes and genotypes have been made for only a few nonmodel organisms. However, such links can be essential to understand mechanisms of ecological speciation. The Costa Rican endemic Mangrove Warbler subspecies provides an excellent subject to study differentiation with gene flow, as it is distributed along a strong precipitation gradient on the Pacific coast with no strong geographic barriers to isolate populations. Mangrove Warbler populations could be subject to divergent selection driven by precipitation, which influences soil salinity levels, which in turn influences forest structure and food resources. We used single nucleotide polymorphisms (SNPs) and morphological traits to examine the balance between neutral genetic and phenotypic divergence to determine whether selection has acted on traits and genes with functions related to specific environmental variables. We present evidence showing: (a) associations between environmental variables and SNPs, identifying candidate genes related to bill morphology (BMP) and osmoregulation, (b) absence of population genetic structure in neutrally evolving markers, (c) divergence in bill size across the precipitation gradient, and (d) strong phenotypic differentiation (PST) which largely exceeds neutral genetic differentiation (FST) in bill size. Our results indicate an important role for salinity, forest structure, and resource availability in maintaining phenotypic divergence of Mangrove Warblers through natural selection. Our findings add to the growing body of literature identifying the processes involved in phenotypic differentiation along environmental gradients in the face of gene flow. 相似文献
17.
Riparian ecosystems are recognized as sinks for inorganic nitrogen (N). Denitrification, a heterotrophic microbial process,
often accounts for a significant fraction of the N removed. Characteristics of both riparian soils and hydrologic vectors
may constrain the locations where denitrification can occur within riparian ecosystems by influencing the distribution of
substrates, water, and suitable redox conditions. We employed spatially explicit methods to quantify heterogeneity of soil
characteristics and potential rate of denitrification in semi-arid riparian ecosystems. These results allow us to evaluate
the relative contributions of hydrologic vectors (water courses that convey materials) and soil resources (materials required
by biota) to spatial heterogeneity of denitrification. During dry and monsoon seasons we contrasted a mesic site, characterized
by shallow groundwater and annual inundation by floods, with a xeric site that is inundated less often and has a deeper water
table. Potential denitrification was detected throughout the mesic floodplain and the average rate of denitrification was
greater at the mesic site than at the xeric site, indicating the influence of water availability on denitrification. At the
xeric reach, sharp declines in pools of soil resources and rate of denitrification occurred away from the stream, demonstrating
the importance of the stream in determining spatial patterns. Using geographically weighted regression analysis, we determined
that soil organic matter and soil nitrate were significant predictors of denitrification at the xeric site, but that factors
influencing denitrification varied spatially. Spatial heterogeneity of carbon (C) and N substrates in soils likely influenced
spatial patterns of denitrification, but distribution of C and N substrates was ultimately organized by hydrologic vectors.
Droughts will increase the abundance of reaches with hydrogeomorphic templates similar to the xeric reach studied here. Consequences
of such a transition may include a reduced rate of denitrification and patchy distribution of denitrification in floodplain
soils, which will decrease the contribution of riparian ecosystems to N removal.
TKH designed and completed the study and wrote the paper; EAW contributed methods and edited the paper; NBG designed the study
and edited the paper. 相似文献
18.
It is not yet clear under what conditions empirical studies can reliably detect progress toward ecological speciation through the analysis of allelic variation at neutral loci. We use a simulation approach to investigate the range of parameter space under which such detection is, and is not, likely. We specifically test for the conditions under which divergent natural selection can cause a ‘generalized barrier to gene flow’ that is present across the genome. Our individual‐based numerical simulations focus on how population divergence at neutral loci varies in relation to recombination rate with a selected locus, divergent selection on that locus, migration rate and population size. We specifically test whether genetic differences at neutral markers are greater between populations in different environments than between populations in similar environments. We find that this expected signature of ecological speciation can be detected under part of the parameter space, most consistently when divergent selection is strong and migration is intermediate. By contrast, the expected signature of ecological speciation is not reliably detected when divergent selection is weak or migration is low or high. These findings provide insights into the strengths and weaknesses of using neutral markers to infer ecological speciation in natural systems. 相似文献
19.
The Upper San Pedro River is one of the few remaining undammed rivers that maintain a vibrant riparian ecosystem in the southwest United States. However, its riparian forest is threatened by diminishing groundwater and surface water inputs, due to either changes in watershed characteristics such as changes in riparian and upland vegetation, or human activities such as regional groundwater pumping. We used satellite vegetation indices to quantify the green leaf density of the groundwater‐dependent riparian forest from 1984 to 2012. The river was divided into a southern, upstream (mainly perennial flow) reach and a northern, downstream (mainly intermittent and ephemeral flow) reach. Pre‐monsoon (June) Landsat normalized difference vegetation index (NDVI) values showed a 20% drop for the northern reach (P < 0·001) and no net change for the southern reach (P > 0·05). NDVI and enhanced vegetation index values were positively correlated (P < 0·05) with river flows, which decreased over the study period in the northern reach, and negatively correlated (P < 0·05) with air temperatures in both reaches, which have increased by 1·4 °C from 1932 to 2012. NDVI in the uplands around the river did not increase from 1984 to 2012, suggesting that increased evapotranspiration in the uplands was not a factor in reducing river flows. Climate change, regional groundwater pumping, changes in the intensity of monsoon rain events and lack of overbank flooding are feasible explanations for deterioration of the riparian forest in the northern reach. Copyright © 2014 John Wiley & Sons, Ltd. 相似文献
20.
Linking landscape effects on gene flow to processes such as dispersal and mating is essential to provide a conceptual foundation for landscape genetics. It is particularly important to determine how classical population genetic models relate to recent individual-based landscape genetic models when assessing individual movement and its influence on population genetic structure. We used classical Wright-Fisher models and spatially explicit, individual-based, landscape genetic models to simulate gene flow via dispersal and mating in a series of landscapes representing two patches of habitat separated by a barrier. We developed a mathematical formula that predicts the relationship between barrier strength (i.e., permeability) and the migration rate (m) across the barrier, thereby linking spatially explicit landscape genetics to classical population genetics theory. We then assessed the reliability of the function by obtaining population genetics parameters (m, F(ST) ) using simulations for both spatially explicit and Wright-Fisher simulation models for a range of gene flow rates. Next, we show that relaxing some of the assumptions of the Wright-Fisher model can substantially change population substructure (i.e., F(ST) ). For example, isolation by distance among individuals on each side of a barrier maintains an F(ST) of ～0.20 regardless of migration rate across the barrier, whereas panmixia on each side of the barrier results in an F(ST) that changes with m as predicted by classical population genetics theory. We suggest that individual-based, spatially explicit modelling provides a general framework to investigate how interactions between movement and landscape resistance drive population genetic patterns and connectivity across complex landscapes. 相似文献