硫胺素对Arthrobacter sp.A302环磷酸腺苷发酵的影响

研究在培养基中加入硫胺素（V B1）对cAMP发酵的影响。结果表明：V B1的最适添加量为0.5 g/L,与对照组相比,环磷酸腺苷（cAMP）产量和细胞干质量分别提高了36.4%和41.8%,达到7.5和7.8 g/L。琥珀酸和α-酮戊二酸的含量有明显的提高,平均提高了43.59%和40.77%;同时,主要副产物乙酸的含量没有明显变化。在发酵过程中,V B1的加入对ATP的含量及与cAMP合成密切相关的几种酶的活性也有显著的影响。     

阿特拉津降解菌Arthrobacter sp.AG1降解基因研究

菌株Arthrobacter sp. AG1能以4000mg/L的阿特拉津(AT)为唯一碳源、氮源和能源生长。通过设计特异引物从AG1中扩增出阿特拉津氯水解酶基因trzN的全序列,该基因与已报道的trzN基因序列相似性为99%。AG1菌株中含有两个大于100kb的质粒,Southern杂交结果显示trzN和atzB基因均位于其中较大的一个质粒pAG1上。将AG1菌株在LB液体培养基中转接三代后,发现34%的细菌细胞丢失了降解活性,但却未发现丢失质粒,PCR扩增结果表明突变子丢失了trzN基因,但atzB和atzC基因未丢失,说明降解活性的缺失是trzN基因片段从质粒上丢失的结果,表明trzN基因在环境中存在水平转移现象,暗示菌株AG1中的阿特拉津降解基因是基因的水平转移重组的结果。     

Arthrobacter sp. lipase immobilization for preparation of enantiopure masked β-amino alcohols

Recent reports on immobilization of lipase from Arthrobacter sp. (ABL, MTCC 5125; IIIM isolate) on insoluble polymers have shown altered properties including stability and enantioselectivity. Present work demonstrates a facile method for the preparation of enantiopure β-amino alcohols by modulation of ABL enzyme properties via immobilization on insoluble as well as soluble supports using entrapment/covalent binding techniques. Efficacies of immobilized ABL on insoluble supports prepared from tetraethylorthosilicate/aminopropyltriethoxy silane and soluble supports derived from copolymerization of N-vinyl pyrrolidone-allylglycidyl ether (ANP type)/N-vinyl pyrrolidone-glycidyl methacrylate (GNP type) for kinetic resolution of masked β-amino alcohols have been studied vis-à-vis free ABL enzyme/wet cell biomass. The immobilized lipase on different insoluble/soluble supports has shown 21–110 mg/g protein binding and 30–700 U/g activity for hydrolyzing tributyrin substrate. The findings have shown a significant enhancement in enantioselectivity (ee 99%) vis-à-vis wet cell biomass providing ee 70–90% for resolution of β-amino alcohols.     

Crystal structure of a lactosucrose-producing enzyme,Arthrobacter sp. K-1 β-fructofuranosidase

Arthrobacter sp. K-1 β-fructofuranosidase (ArFFase), a glycoside hydrolase family 68 enzyme, catalyzes the hydrolysis and transfructosylation of sucrose. ArFFase is useful for producing a sweetener, lactosucrose (4^G-β-d-galactosylsucrose). The primary structure of ArFFase is homologous to those of levansucrases, although ArFFase catalyzes mostly hydrolysis when incubated with sucrose alone, even at high concentration. Here, we determined the crystal structure of ArFFase in unliganded form and complexed with fructose. ArFFase consisted of a five-bladed β-propeller fold as observed in levansucrases. The structure of ArFFase was most similar to that of Gluconacetobacter diazotrophicus levansucrase (GdLev). The structure of the catalytic cleft of ArFFase was also highly homologous to that of GdLev. However, two amino acid residues, Tyr232 and Pro442 in ArFFase, were not conserved between them. A tunnel observed at the bottom of the catalytic cleft of ArFFase may serve as a water drain or its reservoir.     

Ammonium formation and assimilation in P(SARK)∷IPT tobacco transgenic plants under low N

Wild Type (WT) and transgenic tobacco plants expressing isopentenyltransferase (IPT), a gene encoding the enzyme regulating the rate-limiting step in cytokinins (CKs) synthesis, were grown under limited nitrogen (N) conditions. We analyzed nitrogen forms, nitrogen metabolism related-enzymes, amino acids and photorespiration related-enzymes in WT and P_SARK∷IPT tobacco plants. Our results indicate that the WT plants subjected to N deficiency displayed reduced nitrate (NO₃⁻) assimilation. However, an increase in the production of ammonium (NH₄⁺), by the degradation of proteins and photorespiration led to an increase in the glutamine synthetase/glutamate synthase (GS/GOGAT) cycle in WT plants. In these plants, the amounts of amino acids decreased with N deficiency, although the relative amounts of glutamate and glutamine increased with N deficiency. Although the transgenic plants expressing P_SARK∷IPT and growing under suboptimal N conditions displayed a significant decline in the N forms in the leaf, they maintained the GS/GOGAT cycle at control levels. Our results suggest that, under N deficiency, CKs prevented the generation and assimilation of NH₄⁺ by increasing such processes as photorespiration, protein degradation, the GS/GOGAT cycle, and the formation of glutamine.     

Arthrobacter sp. lipase immobilization on magnetic sol–gel composite supports for enantioselectivity improvement

A bacterial lipase from Arthrobacter sp. (ABL: IIIM Jammu, India strain, MTCC No. 5125) has been immobilized on non-magnetic (Type A) and magnetic (Type B) supports derived from copolymerization of 3-aminopropyltriethoxysilane and tetraethylorthosilicate. Immobilized ABL presented 21–34 mg/g protein binding providing 30–75 units/g activity in Type A non-magnetic composites and 24–45 mg/g protein binding providing 35–90 units/g activity with Type B supports containing magnetic particles. Immobilized ABL preparations have shown enhanced stability at pH 5–9 and temperature up to 70 °C whereas free ABL is unstable under these conditions. Improved hydrolytic conversion as well as enantioselectivity were observed with acyl fluoxetine intermediate (ethyl 3-hydroxy-3-phenylpropanoate alkyl acylates) and chiral auxiliaryacyl 1-phenyl ethanol using immobilized ABL derivatives (ee ～99%; 3–4-fold increase in E-values) as compared to ABL enzyme/cells (ee 93–98%). Introduction of magnetic particles in these supports has led to easier separation process with high product recovery yields.     

Lessons from an “old” second generation in the US: fresh evidence on assimilation theories

Taking a multilevel approach and accounting for the complex interaction between sending and host countries, Origins and Destinations: The Making of the Second Generation brings new insights to the divergent outcomes of immigrant children in the US. Using the same data of several award winning books, it directly challenges some of the predictions of assimilation theories and the hyperselectivity model.     

Structural features of cold-adapted dimeric GH2 β-D-galactosidase from Arthrobacter sp. 32cB

Crystal structures of cold-adapted β-d-galactosidase (EC 3.2.1.23) from the Antarctic bacterium Arthrobacter sp. 32cB (ArthβDG) have been determined in an unliganded form resulting from diffraction experiments conducted at 100 K (at resolution 1.8 Å) and at room temperature (at resolution 3.0 Å). A detailed comparison of those two structures of the same enzyme was performed in order to estimate differences in their molecular flexibility and rigidity and to study structural rationalization for the cold-adaptation of the investigated enzyme. Furthermore, a comparative analysis with structures of homologous enzymes from psychrophilic, mesophilic, and thermophilic sources has been discussed to elucidate the relationship between structure and cold-adaptation in a wider context. The performed studies confirm that the structure of cold-adapted ArthβDG maintains balance between molecular stability and structural flexibility, which can be observed independently on the temperature of conducted X-ray diffraction experiments. Obtained information about proper protein function under given conditions provide a guideline for rational engineering of proteins in terms of their temperature optimum and thermal stability.     

Arthrobacter sp.2PR降解2-羟基吡啶动力学及降解特性研究

从辽河口石油污染土壤中筛选到一株能够以2-羟基吡啶作为唯一碳源、氮源和能源进行生长的菌株2PR,基于形态学观察、16S rRNA基因序列分析鉴定菌株2PR属于节杆菌属(Arthrobacter)。菌株2PR生长和降解2-羟基吡啶的最适条件是30℃,pH为7.0。当2-羟基吡啶初始浓度为6.0mg/ml时,120h菌株2PR对2-羟基吡啶的降解效率为94.48%,初始2-羟基吡啶浓度为8.0mg/ml时,156h的降解效率为89.21%。对2-羟基吡啶降解动力学过程进行模拟,结果显示菌株2PR生长和降解过程符合logisitic模型,该模型为环境中2-羟基吡啶的生物降解提供了理论参考。休止细胞反应和中间代谢产物检测表明,菌株2PR在降解2-羟基吡啶的过程中生成了蓝色化合物4,5,4',5'-tetrahydroxy-3,3'-diazadiphenoquinone-(2,2')。推测该菌株降解2-羟基吡啶的途径可能是首先由双加氧酶催化生成2,3,6-三羟基吡啶,后者会自发形成蓝色中间代谢产物,2,3,6-三羟基吡啶发生开环反应,最终被完全降解。菌株2PR是已报道菌株中2-羟基吡啶耐受能力和降解能力最强的菌株,在污染物生物修复方面具有广阔的应用前景。     

Effects of nitrogen availability on pigmentation and carbon assimilation in the cyanobacterium Synechococcus sp. strain SH-94–5

Because pigments of phototrophs can be involved either in photosynthesis or photoprotection, pigmentation changes in response to nutrient availability can affect how cells interact with their solar environment. We investigated the impact of nitrogen availability both on pigmentation of the cyanobacterium Synechococcus sp. strain SH-94-5 and on carbon assimilation by this strain in the presence or absence of UV radiation. Pigmentation changes in strain SH-94-5 due to ammonium exhaustion included phycobiliprotein degradation, an exponential decline in chlorophyll a content, and a net increase in beta-carotene. Following its replenishment, ammonium stimulated non-photosynthetic carbon assimilation for several hours prior to the resumption of photosynthesis and growth. Carbon fixation during this lag phase was concurrent with the metabolism of glycogen reserves, and it is likely that inorganic carbon was incorporated into glycogen-derived carbon skeletons primarily for amino acid synthesis. In contrast, carbon fixation was almost exclusively photosynthetic during exponential growth. UV-A radiation (320-400 nm) inhibited photosynthetic but not non-photosynthetic carbon assimilation. Only growing cells were inhibited, and the disappearance of inhibition following nitrogen depletion appeared to result from the reduction of cellular photosensitizing targets below a threshold level rather than from the inactivation of photosynthesis.     

Arnoldiellina fluorescens gen. et sp. nov. – A new green autofluorescent foraminifer from the Gulf of Eilat (Israel)

A new monothalamous (single-chambered) soft-walled foraminiferal species, Arnoldiellina fluorescens gen. et sp. nov., was isolated from samples collected in the Gulf of Eilat, Israel. The species is characterized by a small elongate organic theca with a single aperture of allogromiids. It is characterized by the emission of green autofluorescence (GAF) that has so far not been reported from foraminifera. Phylogenetic analysis of a fragment of the 18S rDNA indicates that the species is related to a group of monothalamous foraminiferans classified as clade I. Although the morphology of the new species is very different compared to the other members of this clade, a specific helix in 18S rRNA secondary structure strongly supports this position.     

Ameyamaea chiangmaiensis gen. nov., sp. nov., an Acetic Acid Bacterium in the α-Proteobacteria

Two isolates, AC04^T and AC05, were isolated from the flowers of red ginger collected in Chiang Mai, Thailand. In phylogenetic trees based on 16S rRNA gene sequences, the two isolates were included within a lineage comprised of the genera Acidomonas, Gluconacetobacter, Asaia, Kozakia, Swaminathania, Neoasaia, Granulibacter, and Tanticharoenia, and they formed an independent cluster along with the type strain of Tanticharoenia sakaeratensis. The calculated pair-wise sequence similarities of isolate AC04^T were 97.8–92.5% to the type strains of the type species of the 11 genera of acetic acid bacteria. The DNA base composition was 66.0–66.1 mol % G+C with a range of 0.1 mol %. A single-stranded, labeled DNA from isolate AC04^T presented levels of DNA-DNA hybridization of 100, 85, 4, and 3% respectively to DNAs from isolates AC04^T and AC05 and the type strains of Tanticharoenia sakaeratensis and Gluconacetobacter liquefaciens. The two isolates were unique morphologically in polar flagellation and physiologically in intense acetate oxidation to carbon dioxide and water and weak lactate oxidation. The intensity in acetate oxidation almost equaled that of the type strain of Acetobacter aceti. The two isolates had Q-10. Isolate AC04^T was discriminated from the type strains of the type species of the 11 genera by 16S rRNA gene restriction analysis using restriction endonucleases TaqI and Hin6I. The unique phylogenetic, genetic, morphological, physiological, and biochemical characteristics obtained indicate that the two isolates can be classified into a separate genus, and Ameyamaea chiangmaiensis gen. nov., sp. nov. is proposed. The type strain is isolate AC04^T (=BCC 15744^T, =NBRC 103196^T), which has a DNA G+C content of 66.0 mol %.     

Hyper production of β-glucosidase by an Aspergillus sp.

Summary An Aspergillus sp. was isolated which secreted high levels of -glucosidase in growth medium. The maximum activity(10 IU/ml of -glucosidase and 22.6 IU/ml of cellobiase) was obtained in cellulose medium supplemented with wheat bran. The pH and temperature optima for this enzyme were 4.5 and 65°C respectively.NCL Communication No. 3616     

Interaction of α2-macroglobulin with alkaline proteinase from an alkalophilicBacillus sp. grown in an extraordinarily alkaline environment

The interaction of ₂-macroglobulin (₂M) with an alkaline serine proteinase (ALPase I) from alkalophilicBacillus sp. grown in an extraordinarily alkaline environment was investigated. Stoichiometry of the reaction showed that ALPase I bound to ₂M in a molar ratio of about 21. The ₂M-ALPase I complex showed about 80% of the proteinase activity shown by ALPase I in the hydrolysis of succinyl-l-alanyl-l-alanyl-l-prolyl-l-phenylalanyl-4-methyl-coumaryl-7-amide (Suc-Ala-Ala-Pro-Phe-MCA) and casein. The conformational changes in the ₂M molecule caused by the complex formation at pH 7.5 were determined from electron micrographs and difference spectra. The antigenic activity of the ₂M-ALPase I complex with the anti-ALPase I antiserum was found to be completely abolished. Immunoelectrophoresis of the complex incubated at pH 7.5 after 48 h showed no appreciable change, and the complex was recognized as exhibiting enhanced stability at pH 7.5.     

Isolation and Characterization of vB_ArS-ArV2 – First Arthrobacter sp. Infecting Bacteriophage with Completely Sequenced Genome

This is the first report on a complete genome sequence and biological characterization of the phage that infects Arthrobacter. A novel virus vB_ArS-ArV2 (ArV2) was isolated from soil using Arthrobacter sp. 68b strain for phage propagation. Based on transmission electron microscopy, ArV2 belongs to the family Siphoviridae and has an isometric head (∼63 nm in diameter) with a non-contractile flexible tail (∼194×10 nm) and six short tail fibers. ArV2 possesses a linear, double-stranded DNA genome (37,372 bp) with a G+C content of 62.73%. The genome contains 68 ORFs yet encodes no tRNA genes. A total of 28 ArV2 ORFs have no known functions and lack any reliable database matches. Proteomic analysis led to the experimental identification of 14 virion proteins, including 9 that were predicted by bioinformatics approaches. Comparative phylogenetic analysis, based on the amino acid sequence alignment of conserved proteins, set ArV2 apart from other siphoviruses. The data presented here will help to advance our understanding of Arthrobacter phage population and will extend our knowledge about the interaction between this particular host and its phages.     

Hermaphroditism,gonochorism, and asexual reproduction in Cassiopea sp.—an immigrant in the islands of Hawai'i

Summary

Two populations of the conspicuous, semi-sessile medusae of the rhizostome genus Cassiopea, both morphologically similar to Cassiopea andromeda from the Red Sea and Indopacific, were recently studied on Oahu (Hawai'i), one from a sheltered saltwater pond (the Hilton Lagoon) next to Ala Wai Harbor, Honolulu, and the second from the canals of a fish farm near Kahuku on NE Oahu. Gonad differentiation, checked in 1998, and again in 1999 and 2000, was unexpectedly different in medusae from these two locations. Contrary to all earlier reports and personal observations of strict gonochorism in C. andromeda, the majority of the Hilton Lagoon medusae collected in 1998 were hermaphroditic with female and male parts intermingling in the gonads. This is an exceptional case in scyphozoans. However, this hermaphroditic condition, which was observed again in 1999, was not stable over time. All six medusae taken from the same lagoon in 2000 were distinctly gonochoristic; four were males, and two were females brooding egg masses on the oral disk. Planula larvae hatching in the laboratory were successfully reared to the scyphopolyp stage. By contrast, medusae sampled from the population were all males in 1998, 1999, and 2000. Polyps were found abundantly on dark, deteriorating leaves of the Red Mangrove, occasionally on other plant remnants, and on discarded plastic materials in the canals. The polyps propagated asexually both by strobilation of ephyrae and by production of motile, larva-like buds that settled to form additional polyps. We speculate on a clonal origin of this male population. Asexually formed propagules were induced to form polyps by exposure to either the peptide Z-GPGGPA or biogenic substrata as has been shown before in other Cassiopea species. The serine/threonine protein phosphatase inhibitor cantharidin stimulated bud development too, but interfered strongly with pattern formation, polarity, and the sequence and timing of morphogenetic events. It did not induce typical bud-to-polyp metamorphosis.