Exoenzyme accumulation in epilithic biofilms

Although exoenzyme accumulation is often proposed as an explanation for the high metabolic activity of biofilms, little is known about the abundance, distribution and turnover rates of exoenzymes within these communities. To assess accumulation, epilithic biofilm samples were collected from a fourth-order boreal river and homogenized. The resulting particles were fractionated by size and each fraction was assayed for nine exoenzyme activities, chlorophyll, and ATP. In general, carbohydrase activities were not correlated with microbial biomass indicators; the largest pool of activity was in the aqueous phase (< 0.2 µm). Phenol oxidase, peroxidase, and phosphatase activities were largely particle-bound and often correlated with microbial biomass distribution. It was concluded that the epilithic biofilm matrix was effective at accumulating carbohydrase activity and that this accumulation may partially account for the metabolic resistance of epilithic biofilms to dissolved organic matter fluctuations.     

A co-culturing/metabolomics approach to investigate chemically mediated interactions of planktonic organisms reveals influence of bacteria on diatom metabolism

Chemically mediated interactions are hypothesized to be essential for ecosystem functioning as co-occurring organisms can influence the performance of each other by metabolic means. A metabolomics approach can support a better understanding of such processes but many problems cannot be addressed due to a lack of appropriate co-culturing and sampling strategies. This is particularly true for planktonic organisms that live in complex but very dilute communities in the open water. Here we present a co-culturing device that allows culturing of microalgae and bacteria that are physically separated but can exchange dissolved or colloidal chemical signals. Identical growth conditions for both partners as well as high metabolite diffusion rates between the culturing chambers are ensured. This setup allowed us to perform a metabolomic survey of the effect of the bacterium Dinoroseobacter shibae on the diatom Thalassiosira pseudonana. GC–MS measurements revealed a pronounced influence of the bacterium on the metabolic profile of T. pseudonana cells with especially intracellular amino acids being up-regulated in co-cultures. Despite the influence on diatom metabolism, the bacterium has little influence on the growth of the algae. This might indicate that the observed metabolic changes represent an adaptive response of the diatoms. Such interactions might be crucial for metabolic fluxes within plankton communities.     

Epilithic algal communities and their relationship to environmental variables in lakes of the English Lake District

1. The relationship between epilithic algal communities and 17 environmental variables from 17 oligo- to eutrophic lakes in the English Lake District was explored using canonical correspondence analysis (CCA). Total phosphorus (TP) and calcium (Ca) concentration were the most important variables accounting for species distribution.
2. Weighted-averaging regression and calibration models with tolerance downweighting and classical deshrinking were developed to infer TP, Ca, dissolved inorganic carbon (DIC) and conductivity from the relative abundance of 138 epilithic algal taxa.
3. The ranges of the environmental variables covered by the models are 0.8-49.2 μg L−1 for TP, 2.2–13.0 mg L−1 for Ca, 0.5–8.6 mg L−1 for DIC and 38–124 μS cm−1 for conductivity. Within these limits the models can be used to infer chemical properties of lakes from epilithic communities in the English Lake District.
4. The major advantages of using transfer functions based on epilithic communities are the low logistic requirements and the integrative character of algal samples compared to direct point measurements of chemical parameters of the lakes.     

Does ambient substrate composition influence consumer diversity effects on algal removal?

Benthic substrates constitute an important habitat template for aquatic communities and may affect the contributions of benthic organisms to ecological processes. To test the effects of ambient substrate composition on the process of algae accrual and removal, we conducted an experiment to examine how substrate type influenced consumer richness effects. We hypothesized that algal removal from focal substrates (ceramic tiles) would be influenced by the surrounding ambient substrate through its effect on nutrient cycling and subsequent algal growth. We manipulated consumer richness in mesocosms at one or three species while holding consumer biomass constant. Aquatic consumers were an amphipod, a snail, and a water boatman, and ambient substrates were either sand or gravel. After 21 days, ambient substrate influenced epilithic algal accrual on tiles, affected physio-chemical parameters within mesocosms, and modified consumer behavior. Chlorophyll a was approximately 2× greater on control tiles surrounded by sand, and FPOM and turbidity were greater on sand than gravel when consumers were present. Substrate modified consumer behavior such that consumers congregated around focal substrates in sand, but dispersed around them in gravel. Consumers also had substrate-specific influences on epilithic chlorophyll, causing a decrease in sand and an increase in gravel. Algal assemblages on focal tiles were dominated by diatoms, and their composition responded to consumer richness and identity, but not substrate. Our data suggest that direct effects (e.g., consumptive removal of epilithon from focal tiles) were more pronounced in sand, whereas indirect effects (e.g., bioturbation and enhanced mixing) promoted algal accrual in gravel. These results show that algae production on exposed surfaces may change as underlying substrate composition changes, and that substrate type can alter consumer diversity effects on algal removal.     

COMMUNITY DYNAMICS AND METABOLISM OF BENTHIC ALGAE COLONIZING WOOD AND ROCK SUBSTRATA IN A FOREST STREAM

Colonization dynamics and metabolism of algal communities on wood (small pieces of Douglas fir) and artificial rock (tiles) substrata were investigated in an open reach in Mack Creek, Cascade Mountain Range, Oregon, for 42 days. Chlorophyll a concentration was not significantly different between the two algal communities (ANOVA, P = 0.119). Even though differences in cell densities were not significantly different between the two algal communities (ANOVA, P = 0.063), biovolume and diversity were greater in epixylic than in epilithic communities (ANOVA, P = 0.011 and 0.002, respectively). The same algal taxa occurred on both substrata, but some of them (e.g. Ceratoneis arcus Grun., Cymbella minuta Hilse ex Rabh., Zygnema sp.) were more numerous on wood, whereas a few others preferred tiles (e.g. Achnanthes lanceolata (Bréb.) Grun.). Scanning electron microscopy revealed a much higher surface roughness on wood, which likely led to a patchy distribution of the algae and the development of stalked diatom species. However, adnate species adapted much better to the mainly flat surfaces of tiles. Net community primary productivity (NCPP) measured in 42-day-old substrata was moderate on tiles but negative on wood. Community respiration (CR) was significantly higher on wood than on tiles. Epixylic algal communities exhibited greater nitrogen demand than epilithic communities after ammonium addition. NCPP shifted to positive values on wood but did not increase on tiles. Despite metabolic differences, the variations between the two communities are more closely related to the physical characteristics of the substrata and the attachment abilities of the algal taxa.     

Effects of nutrient (N,P, C) enrichment upon the littoral diatom community of an oligotrophic high-mountain lake

The effects of nutrient additions upon the epilithic diatom communities and the algal standing crop were investigated in the oligotrophic, softwater Lake Piccolo Naret, situated in the Swiss alps. Nutrient-diffusing flower pot substrates were filled with either N (0.15 mol NaNO₃), P (0.015 mol Na₂HPO₄) or C (0.15 mol NaHCO₃) or combinations of them. Twenty-five pots representing eight treatments were placed into the lake in July 1991 and sampled after 42 days of exposure.On the surfaces of all pots containing P we measured higher algal biomasses as on the control pots. The chlorophyll-a maximum of 12.9 µg cm^{– 2} was obtained on NPC pots (0.47 µg cm^{– 2} on control pots). On pots with P, NP or NPC supply high amounts of green algae were detected, also reflected in an increased chl-b/chl-c ratio related to the controls which showed algal communities dominated by diatoms.The diatom communities on the control pots as well as on the pots with N, P and NP had a structure similar to the epilithic community in Lake Piccolo Naret (dominance identity > 58 %). However, the community structures of the diatoms from pots with C addition (C, NC, PC and NPC) differed considerably. This is discussed in view of the cell densities of dominant diatom species. For further comparisons the results of two additional high-mountain lakes are used. By means of a cluster analysis it could be shown that epilithic diatom communities were considerably influenced by C addition, while N and P supply were of minor importance.     

Remarkable Recovery and Colonization Behaviour of Methane Oxidizing Bacteria in Soil After Disturbance Is Controlled by Methane Source Only

Little is understood about the relationship between microbial assemblage history, the composition and function of specific functional guilds and the ecosystem functions they provide. To learn more about this relationship we used methane oxidizing bacteria (MOB) as model organisms and performed soil microcosm experiments comprised of identical soil substrates, hosting distinct overall microbial diversities (i.e., full, reduced and zero total microbial and MOB diversities). After inoculation with undisturbed soil, the recovery of MOB activity, MOB diversity and total bacterial diversity were followed over 3 months by methane oxidation potential measurements and analyses targeting pmoA and 16S rRNA genes. Measurement of methane oxidation potential demonstrated different recovery rates across the different treatments. Despite different starting microbial diversities, the recovery and succession of the MOB communities followed a similar pattern across the different treatment microcosms. In this study we found that edaphic parameters were the dominant factor shaping microbial communities over time and that the starting microbial community played only a minor role in shaping MOB microbial community     

A multi-lake comparison of epilithic diatom communities on natural and artificial substrates

In a multi-season, multi-lake study of epilithic diatom communities, glass slide artificial substrate samplers provided poor representation of communities on natural substrates. Percent similarities between the two communities averaged only 37 over the course of the study. Overall, natural substrates exhibited greater species richness than artificial samplers, particularly during the summer, although this difference was slight. Patterns of selection and inhibition by artificial substrates of individual diatom species varied by both season and lake. Members of the genus Cymbella, particularly C. microcephala, appeared to be the most consistently inhibited, while Achnanthes minutissima was often selected for. In spite of the great differences between the two substrate types, replicability of artificial substrates was very high, and could prove to be a more important quality in monitoring applications than accurate representation of the natural community.     

Antarctic stream ecosystems: physiological ecology of a blue-green algal epilithon

SUMMARY. 1. Several dozen summer meltwater streams are located in the McMurdo Sound region (c. 78°S 165°E) of southern Victoria Land. They are characterized by a highly variable flow regime at diel, seasonal and annual times caleis; wide fluctuations in temperature and nutrient content; and a very simple epilithic community of cyanophytes ( Nostoc spp., Oscillatoriaceae), bacteria, fungi and microherbivores.
2. The epilithon survives the dark Antarctic winter as dry, frozen mats which provide a large inoculum for growth the following summer. This overwintering assemblage retains a high metabolic capacity and responds rapidly to rehydration.
3. In a series of artificial substrate experiments, biomass accumulation rates were generally less than 0.1 In units d⁻¹. Colonization and growth on the substrates was inversely related to the suspended sediment load of the stream. There was also a visual correspondence between per cent algal cover of the natural streambed and the clarity of the streamwater. Sloughing losses may limit community biomass, particularly in the turbid flowing waters.
4. During running water conditions the mature communities had very low gross photosynthetic rates per unit chlorophyll (<0,1 μg C (μg chl a .h)⁻¹ and per unit carbon (<0,2 μg C (mg biomass C.h)⁻¹). Respiration was generally a high percentage (up to 92%) of gross photosynthesis, which probably reflected the high population densities of microheterotrophs in the community.
5. The floristically simple epilithic mats slowly accumulate to extreme biomass levels (>20 μg chl a cm ⁻², <20 mg C cm⁻²). Production rates per unit biomass are low, probably in response to the cold temperatures of the Antarctic stream environment, and the accumulated biomass represents several seasons of growth.     

Uncertainty of using habitat fidelity in biomonitoring based on benthic diatoms - the Raška River case study

Epilithic diatoms are frequently recommended for river biomonitoring, while much less emphasis is placed on epiphytic communities. This study considers use of epiphytic and epilithic diatom communities from the Ra?ka River in biomonitoring. A total of 212 diatom taxa were recorded in both communities. Dominant diatoms were Achnanthidium minutissimum (Kützing) Czarnecki, A. affine (Grunow) Czarnecki, A. subatomus (Hustedt) Lange-Bertalot, Amphora pediculus (Kützing) Grunow, Diatoma vulgaris Bory, Gomphonema tergestinum (Grunow) Fricke, Cocconeis placentula var. lineata (Ehrenberg) Van Heurck, Melosira varians Agardh and Navicula tripunctata (Müller) Bory. Redundancy analysis (RDA) was used to detect the relationships between diatoms, some environmental factors and sampling sites. Diatoms of the epiphytic community showed a clearly grouping in relation to the sampling sites as compared with diatoms of the epilithic community. Species common to both communities showed a similar correlation with some environmental variables (BOD, pH, NH₄⁺, TP, NO₃^? and conductivity), with three exceptions (Diatoma vulgaris, Cymbella compacta, and Encyonema silesiacum). Pearson’s correlation coefficient showed correlation between selected environmental variables and diatom indices calculated using OMNIDIA 6.2 software (TDI, IPS, CEE, GENRE, TID, SID, SHE and IDSE/5). Diatoms of the epiphytic community are more clearly clustered in relation to the sampling sites as compared with diatoms of the epilithic community. According to our results there is still “place” in biomonitoring for epiphytic community. The present study highlights the necessity of sampling both epiphytic and epilithic communities because substrate specificity could play important role in biomonitoring.     

Interactive effects of ocean acidification and warming on coral reef associated epilithic algal communities under past,present-day and future ocean conditions

Epilithic algal communities play critical ecological roles on coral reefs, but their response to individual and interactive effects of ocean warming (OW) and ocean acidification (OA) is still largely unknown. We investigated growth, photosynthesis and calcification of early epilithic algal community assemblages exposed for 6 months to four temperature profiles (−1.1, ±0.0, +0.9, +1.6 °C) that were crossed with four carbon dioxide partial pressure (pCO₂) levels (360, 440, 650, 940 µatm), under flow-through conditions and natural light regimes. Additionally, we compared the cover of heavily calcified crustose coralline algae (CCA) and lightly calcified red algae of the genus Peyssonnelia among treatments. Increase in cover of epilithic communities showed optima under moderately elevated temperatures and present pCO₂, while cover strongly decreased under high temperatures and high-pCO₂ conditions, particularly due to decreasing cover of CCA. Similarly, community calcification rates were strongly decreased at high pCO₂ under both measured temperatures. While final cover of CCA decreased under high temperature and pCO₂ (additive negative effects), cover of Peyssonnelia spp. increased at high compared to annual average and moderately elevated temperatures. Thus, cover of Peyssonnelia spp. increased in treatment combinations with less CCA, which was supported by a significant negative correlation between organism groups. The different susceptibility to stressors most likely derived from a different calcification intensity and/or mineral. Notably, growth of the epilithic communities and final cover of CCA were strongly decreased under reduced-pCO₂ conditions compared to the present. Thus, CCA may have acclimatized from past to present-day pCO₂ conditions, and changes in carbonate chemistry, regardless in which direction, negatively affect them. However, if epilithic organisms cannot further acclimatize to OW and OA, the interacting effects of both factors may change epilithic communities in the future, thereby likely leading to reduced reef stability and recovery.

     

Do changes in flood pulse duration disturb soil carbon dioxide emissions in semi-arid floodplains?

In semi-arid floodplains the average times between floods have been cited to drive metabolic and biogeochemical responses during the subsequent flooding pulse. However, the interaction effects of flood pulse duration and the length of time between floods on the carbon budget are not well understood. Using field experiments, flood pulses—dry cycles were simulated (SF plots—short flood/dry cycles: 15 flood days + 7 dry + 15 flood and LF plots—long flood/dry cycles: 21 flood + 14 dry + 21 flood) in a semi-arid floodplain in Central Spain, in order to study the effects on soil CO₂ emissions. Differences on soil water content among SF, LF and control plots were statistically significant throughout the experiment (p < 0.01). Soil CO₂ emission rates during drying time were significantly related with the duration of previous flooding and inter-flooding intervals (R ² = 0.52–0.64, p = 0.03). During the first stage of desiccation, the high soil water content appears to limit aerobic metabolism. Soil respiration rates similar to those of control plots measurements occurred 1–2 weeks later. Then, soil respiration increased to a maximum rate which was delayed 5–8 weeks, as high soil water content limited microbial activity. While more than 7 days of inundation promoted denitrification, organic nutrients supplied by flood water increased 1% soil respiration during drying. Differences between SF and LF plots in soil CO₂ emissions only appeared after floodplain soil had been subjected to two consecutive flood-dry cycles; 70 days after the second inundation ended, CO₂ fluxes achieved similar values in all treatments. Daily soil CO₂ emission rates during the entire study period (117 days) were comparable, independently of the flood duration and the time between floods (75.76 ± 1.59 and 77.94 ± 0.45 mmol CO₂ m^?2 day^?1, in SF and LF, respectively). Flood disturbance affects site-specific microbial processes, but only during very short time periods. The mechanism by which soil microbial communities cope or adapt to new conditions needs to be reassessed in future research in order to determine the long-term effects of hydrological changes in the soil carbon balance of semi-arid floodplains.     

Microcommunities and microgradients: Linking nutrient regeneration,microbial mutualism,and high sustained aquatic primary production

Nutrient regeneration is essential to sustained primary production in the aquatic environment because of coupled physical and metabolic gradients. The commonly evaluated ecosystem perspective of nutrient regeneration, as is illustrated among planktonic paradigms of lake ecosystems, functions only at macrotemporal and spatial scales. Most inland waters are small and shallow. Consequently, most organic matter of these waters is derived from photosynthesis of emergent, floating-leaved, and submersed higher plants and microflora associated with living substrata and detritus, including sediments, as well as terrestrial sources. The dominant primary productivity of inland aquatic ecosystems is not planktonic, but rather is associated with surfaces. The high sustained rates of primary production among sessile communities are possible because of the intensive internal recycling of nutrients, including carbon. Steep gradients exist within these attached microbial communities that (a) require rapid, intensive recycling of carbon, phosphorus, nitrogen, and other nutrients between producers, particulate and dissolved detritus, and bacteria and protists: (b) augment internal community recycling and losses with small external inputs of carbon and nutrients from the overlying water or from the supporting substrata; and (c) encourage maximal conservation of nutrients. Examples of microenvironmental recycling of carbon, phosphorus, and oxygen among epiphytic, epipelic, and epilithic communities are explained. Recalcitrant dissolved organic compounds from decomposition can serve both as carbon and energy substrates as well as be selectively inhibitory to microbial metabolism and nutrient recycling. Rapid recycling of nutrient and organic carbon within micro-environments operates at all levels, planktonic as well as attached, and is mandatory for high sustained productivity.     

Regular and irregular events in fouling communities in the White Sea

Patterns of long-term changes in fouling communities developing on artificial substrates in the White Sea are reviewed. The most significant shifts occurring in these communities are caused by biological successions that can last for several decades. Terminal stages of succession are the communities of a mussel Mytilus edulis or a solitary ascidian Styela rustica which can periodically replace one another within a narrow range of depths: from 1–1.5 to 5 m. Sporadic local invasion of a sponge Halichondria panicea can transiently modify the composition and performance of fouling communities. Sudden invasion of species that are not a typical component of fouling communities (infaunal polychaetes and molluscs, crabs) is not rare phenomenon but these organisms do not play a significant role there. Representatives of the associated polychaete fauna in fouling communities show long-term cyclic fluctuations in their abundances. Duration of these cycles is 7–8, 11–14, or 20 years.     

Endo‐ and epilithic faunal succession in a Pliocene–Pleistocene cave on Rhodes,Greece: record of a transgression

A fossil cave and associated sediments and fossil fauna located on the Greek island of Rhodes in the eastern Aegean Sea is reported here, and the depositional history discussed. The sediments were deposited during the late Pliocene, in the interstitial space between basement boulders of up to 1500 tons. The depositional history of the cave comprises eight stages. From initial flooding, the basin experienced a continuous transgression with sea‐level rise in excess of 500 m, followed by a rapid, forced regression of similar magnitude. The recognition of a succession of fossil communities illustrates this transgression, with a seemingly abrupt shift from endolithic to epilithic biota dominance late in the transgressive cycle. The communities recording the increasing water depth from 0 to >150 m are: The Gatrochaenolithes torpedo (bivalve boring) and Entobia gonioides (sponge boring) ichnocoenosis, with peak distribution between 0 and 1 m water depth; the E. gonioides – E. magna ichnocoenosis, with 1–5 m depth peak distribution; the exclusive E. magna ichnocoenosis, with 5–40 m depth peak distribution; and the E. gigantea ichnocoenosis, with a peak distribution approaching 150–200 m. Below this depth, an epilithic community without boring organisms takes over, characterized by the calcareous sponge Merlia cf. normani, and the inarticulate brachiopod Novocrania turbinata. Simultaneously with the succession of the endo‐ and epilithic cave wall fossil communities, skeletal calcarenite accumulated on the cave floor; the erosional remnants of this sediment are insufficient to further expand the overall transgression–regression model.     

Selective advantages conferred by the high performance physiology of tunas,billfishes, and dolphin fish

Tunas are extensively distributed throughout world's oceans and grow and reproduce fast enough to support one of the world's largest commercial fisheries. Yet they are apex predators living in the energy depauperate pelagic environment. It is often presumed that tunas evolved their specialized anatomy, physiology, and biochemistry to be capable of (a) high maximum swimming speeds, (b) high sustained swimming speeds, and/or (c) very efficient swimming, all of which help account for their wide distribution and reproductive success. However, a growing body of data on the energetics and physiological abilities of tunas do not support these assumptions. The three things demonstratively “high performance” about tunas, and probably other pelagic species such as marlin (Makaira spp. and Tetrapturus spp.) and dolphin fish (Coryphaena spp.), are (a) rates of somatic and gonadal growth, (b) rates of digestion, (c) rates of recovery from exhaustive exercise (i.e., clearance of muscle lactate and the concomitant acid load). All of these are energy consuming processes requiring rates of oxygen and substrate delivery above those needed by the swimming muscles for sustained propulsion and for other routine metabolic activities. I hypothesize that the ability of high performance pelagic species (tunas, billfishes, and dolphin fish) to deliver oxygen and metabolic substrates to the tissues at high rates evolved to permit rapid somatic and gonadal growth, rapid digestion, and rapid recovery from exhaustive exercise (abilities central to success in the pelagic environment), not exceptionally high sustained swimming speeds.     

Convergent photophysiology and prokaryotic assemblage structure in epilithic cyanobacterial tufts and algal turf communities

As global change spurs shifts in benthic community composition on coral reefs globally, a better understanding of the defining taxonomic and functional features that differentiate proliferating benthic taxa is needed to predict functional trajectories of reef degradation better. This is especially critical for algal groups, which feature dramatically on changing reefs. Limited attention has been given to characterizing the features that differentiate tufting epilithic cyanobacterial communities from ubiquitous turf algal assemblages. Here, we integrated an in situ assessment of photosynthetic yield with metabarcoding and shotgun metagenomic sequencing to explore photophysiology and prokaryotic assemblage structure within epilithic tufting benthic cyanobacterial communities and epilithic algal turf communities. Significant differences were not detected in the average quantum yield. However, variability in yield was significantly higher in cyanobacterial tufts. Neither prokaryotic assemblage diversity nor structure significantly differed between these functional groups. The sampled cyanobacterial tufts, predominantly built by Okeania sp., were co-dominated by members of the Proteobacteria, Firmicutes, and Bacteroidota, as were turf algal communities. Few detected ASVs were significantly differentially abundant between functional groups and consisted exclusively of taxa belonging to the phyla Proteobacteria and Firmicutes. Assessment of the distribution of recovered cyanobacterial amplicons demonstrated that alongside sample-specific cyanobacterial diversification, the dominant cyanobacterial members were conserved across tufting cyanobacterial and turf algal communities. Overall, these data suggest a convergence in taxonomic identity and mean photosynthetic potential between tufting epilithic cyanobacterial communities and algal turf communities, with numerous implications for consumer-resource dynamics on future reefs and trajectories of reef functional ecology.     

Transfer and Occurrence of Large Mercury Resistance Plasmids in River Epilithon

In situ mating experiments were done in the River Taff, South Wales, United Kingdom, by using a natural mercury resistance plasmid (pQM1) isolated from a mixture of epilithic bacteria in vitro. The river temperature from March to November was found to influence transfer frequencies strongly (6.8 × 10⁻⁹ to 1.5 × 10⁻² per recipient). A linear relationship existed between log₁₀ transfer frequency and river temperature (6 to 21°C), a 2.6°C change in temperature giving a 10-fold change in transfer frequency. In vitro experiments showed that pQM1 transferred most efficiently between fluorescent pseudomonads and that one epilithic isolate (Pseudomonas fluorescens) was an efficient donor in situ. Experiments with a P. putida recipient showed that intact epilithic bacterial communities could transfer mercury resistance plasmids in situ at frequencies of up to 3.75 × 10⁻⁶ per recipient. Nineteen of the large (>250-kilobase) plasmids isolated by transfer into P. putida were studied in detail and grouped into seven types by restriction digests. Mercury resistance and UV resistance were found to be common linked phenotypes in 19 of the 23 plasmids tested.     

Effects of elevated pCO2 on epilithic and endolithic metabolism of reef carbonates

We investigated effects of elevated partial pressure of CO₂ (pCO₂) on the metabolism of epilithic and endolithic phototrophic communities that colonized experimental coral blocks. Blocks of the massive coral Porites lobata were exposed to colonization by epilithic and endolithic organisms at an oceanic site in Kaneohe Bay (Hawaii) for 6 months, and then were transported to laboratory tanks. A bubbling system was used to maintain two treatments for 3 months, one at ambient pCO₂ (400 ppm) and the second at elevated pCO₂ (750 ppm). Net photosynthetic rates of epilithic communities in the high pCO₂ treatment, dominated by encrusting coralline algae, decreased by 35% while respiration rates remained constant. In contrast, metabolism of endolithic phototrophs, comprised of cyanobacteria and algae, was not significantly affected by the elevated pCO₂ even though endoliths contributed about 63% to block production.     

Thermal dependence of clearance and metabolic rates in slow- and fast-growing spats of manila clam Ruditapes philippinarum

Thermal dependence of clearance rate (CR: l h^?1), standard (SMR: J h^?1) and routine metabolic rates (RMR: J h^?1), were analyzed in fast (F)- and slow (S)-growing juveniles of the clam Ruditapes philippinarum. Physiological rates were measured at the maintenance temperature (17 °C), and compared with measurements performed at 10 and 24 °C after 16 h and 14 days to analyze acute and acclimated responses, respectively. Metabolic rates (both RMR and SMR) differed significantly between F and S seeds, irrespective of temperature. Mass-specific CRs were not different for F and S seeds but were significantly higher in F clams for rates standardized according to allometric size-scaling rules. Acute thermal dependency of CR was equal for F and S clams: mean Q ₁₀ were ≈3 and 2 in temperature ranges of 10–17 and 17–24 °C, respectively. CR did not change after 2 weeks of acclimation to temperatures. Acute thermal effects on SMR were similar in both groups (Q ₁₀ ≈ 1 and 1.6 in temperature ranges of 10–17 and 17–24 °C, respectively). Large differences between groups were found in the acute thermal dependence of RMR: Q ₁₀ in F clams (≈1.2 and 1.9 at temperature ranges of 10–17 and 17–24 °C, respectively) were similar to those found for SMR (Q ₁₀ = 1.0 and 1.7). In contrast, RMR of S clams exhibited maximum thermal dependence (Q ₁₀ = 3.1) at 10–17 °C and become depressed at higher temperatures (Q ₁₀ = 0.9 at 17–24 °C). A recovery of RMR in S clams was recorded upon acclimation to 24 °C. Contrasting metabolic patterns between fast and slow growers are interpreted as a consequence of differential thermal sensitivity of the fraction of metabolism associated to food processing and assimilation.