Biodesulfurization: a model system for microbial physiology research

Biological desulfurization (biodesulfurization) of dibenzothiophene (DBT) by the 4S pathway is a model system for an enviromentally benign way to lower the sulfur content of petroleum. Despite a large amount of effort the efficiency of the 4S pathway is still too low for a commercial oil biodesulfurization process, but the 4S pathway could potentially be used now for commercial processes to produce surfactants, antibiotics, polythioesters and other chemicals and for the detoxification of some chemical warfare agents. Proteins containing disulfide bonds are resistant to temperature, pH, and solvents, but the production of disulfide-rich proteins in microbial hosts is challenging. The study of the 4S pathway can provide insights as to how to maximize the production of disulfide-rich proteins. Engineering of the operon encoding the 4S pathway to contain a greater content of methionine and cysteine may be able to link use of DBT as a sole sulfur source to increasing 4S pathway activity by increasing the nutritional demand for sulfur. This strategy could result in the development of biocatalysts suitable for use in an oil biodesulfurization process, but the study of the 4S pathway can also lead to a better understanding of microbial physiology to optimize activity of a mult-step co-factor-requiring pathway, as well as the production of highly stable industrially relevant enzymes for numerous applications.     

Global stability and optimisation of a general impulsive biological control model

An impulsive model of augmentative biological control consisting of a general continuous predator-prey model in ordinary differential equations, i.e. a meta-model, augmented by a discrete part describing periodic introductions of predators is considered. The existence of an invariant periodic solution that corresponds to prey eradication is shown and a condition ensuring its global asymptotic stability is given. An optimisation problem related to the preemptive use of augmentative biological control is then considered. It is assumed that the per time unit budget of biological control (i.e. the number of predators to be released) is fixed and the best deployment of this budget is sought in terms of release frequency. The cost function to be minimised is the time needed to reduce an unforeseen prey (pest) invasion occurring at a worst time instant under some harmless level. The analysis shows that the optimisation problem admits a countable infinite number of solutions. An argumentation considering the required robustness of the optimisation result with respect to the invasive prey population level and to the model parameters is then conducted. It is shown that the cost function is decreasing in the predator release frequency so that the best deployment of the biocontrol agents is to carry out as frequent introductions as possible.     

Use of a general model to examine control procedures for a cockroach population

A matrix model for populations is described. The model breaks the population into an appropriate number of stadia to allow for reproductive cycles and includes individual daily survival rates and simple density dependence together with migration. Mortality due to insecticidal treatments may be applied on specified days to simulate space spraying while residual insecticides may be simulated with constant or declining effect. The use of the model is exemplified using a simulated population of Blattella germanica with various treatment regimes. This simulation emphasised the importance of immigration.     

A general myocybernetic control model of skeletal muscle

A general myocybernetic control model of skeletal muscle is presented which constitutes an extension, to general control modes, of a previously published control model. The restriction, in the previous model, to a constant number of stimulated motor units has been removed and the new model allows for both a varying number of stimulated motor units and a varying average stimulation rate. The general model is tested by comparing its predictions with experimental records of the force output of the quadriceps femoris muscle. It is found that the model correctly predicts the initial excitation-contraction delay, the dips in the force record, and several other contraction phenomena.     

Integral control in accommodation.

Models of the accommodation system available inthe literature may be classified as proportional controller, optimal bang-bang controller and pure integral controller types. Each of these models explains only some aspects of the experimental behavior of the system and conflicts with other experimental observations. Based on two different experiments in which the built-in phyiological feedback loop has been opened, a leaky-integrator element is proposed for the accommodation controller. This element appears to resolve the conflict between the proportional and integral controller models and also explains the experimental observations better than any of the existing models.     

A model for a non-chemical form of life: Crystalline physiology

A definition of fundamental living units is given according to which they are constituted by the material support of some ‘memory’ the latter is required

- to be stable,

- to contain rich information,

- to diffuse it into the surrounding medium.

It is then shown that the complex dislocation networks encountered in crystals can in some cases follow these criteria and lead to a crystalline physiology. The places of possible occurrence in nature of this kind of physiology, terrestrial and extraterrestrial rocks, interplanetary dust, white dwarfs and neutron stars are then discussed.     

Evolutionarily stable communication between kin: a general model

At present, the most general evolutionary theory of honest communication is Grafen''s model of Zahavi''s ''handicap'' signalling system, in which honesty of signals about the signaller''s quality (e.g. mate suitability or fighting ability) is maintained by the differentially high cost of signals to signallers having lower quality. The latter model is here further generalized to include any communication between signallers and receivers that are genetically related (e.g. parents and begging offspring, cooperative or competing siblings). Signalling systems involving relatives are shown to be evolutionarily stable, despite a potential pay-off for false signalling, if the Zahavian assumption of differential signal costs holds and there are diminishing reproductive returns to the signaller as the receiver''s assessed value of its attribute increases, or if, regardless of whether the Zahavian assumption holds, signallers with high values of the attribute benefit more from a given receiver assessment than signallers with low values (e.g. begging chicks that are hungrier benefit more from being fed). In stable systems of signalling among kin, it is also shown to be generally true that (i) levels of signalling and thus observed signal costs will decline as relatedness increases or as the receiver''s reproductive penalty for erroneous assessment increases, and (ii) receivers will consistently, altruistically overestimate the true value of the signalled attribute.     

Multi-random binding molecular interactions: a general kinetic model

A kinetic model is suggested to account for the interactions of several ligands with a target whose molecule possesses several independent equivalent receptor sites for each ligand (multiligand multisite model). To analyse the problem, we shall derive solutions for three elementary situations: (a) interactions of a ligand with a mono-receptor site target molecule (monosite model); (b) interactions of several ligands with a target whose molecule possesses one receptor site for each ligand involved (multiligand model); (c) interactions of a ligand with a target whose molecule possesses several receptor sites of the same kind for this ligand (multisite model). Throughout this study, every ligand molecule is assumed to offer one binding site to the target. The main implications of the corresponding analytical solutions are discussed from a molecular point of view. The results cover a great many well-known aspects of the molecular interactions in various fields such as enzymology, endocrinology, radio-immunology and saturation analysis. As suggested by the inhibition patterns obtained, this model may therefore provide a new point of view to interpret the relevant phenomena. Furthermore, a kinetic approach to the generalized mass action law can be deduced from this model, and experimental conditions in which the isotopic dilution law applies are examined.     

Catabolite inhibition: a general phenomenon in the control of carbohydrate utilization

When Escherichia coli is grown in synthetic medium with radioactive galactose or lactose as the carbon source, the addition of glucose rapidly inhibited utilization of the radioactive substrate, whether the formation of (14)CO(2) or acid-insoluble products was measured. The inhibition was reversed after the removal of glucose. Experiments with mutants blocked in subsequent steps of galactose and lactose metabolism demonstrated that the inhibition occurs prior to the formation of the first metabolic product. The utilization of a variety of sugars, including maltose, lactose, mannose, galactose, l-arabinose, xylose, and glycerol was inhibited by glucose. Of a number of carbohydrates tested as potential inhibitors, only glucose and, to a lesser extent, glucose-6-phosphate (G-6-P) were capable of inhibiting the utilization of all of the substrates. Glucose did not inhibit G-6-P utilization but G-6-P inhibited glucose utilization. With all substrates, except glycerol, there was a delay before the onset of inhibition by G-6-P. We conclude that E. coli has a general regulatory mechanism, termed catabolite inhibition, which controls the activity of early reactions in carbohydrate metabolism, allowing certain substrates to be utilized preferentially.     

The ocular lens: a classic model for development, physiology and disease

Millions are rendered blind or exhibit visual impairment due to pathologies of the lens of the eye. Lens research therefore addresses the direct need to gain insights into the cellular and molecular basis of disease, but, moreover, serves as a valuable experimental system to answer fundamental biological questions. This themed issue showcases the scientific knowledge of the processes involved in the development, structure, ultrastructure, physiology and pathology of the lens and how this information has the potential to significantly further knowledge in various fields of research. The issue is divided into three main areas. Firstly, the lens is discussed as a developmental model for embryonic induction, as an elegant system for studying the role of growth factors in development, and for analysis of the molecular control and cellular basis of cellular differentiation. The genetic basis of disorders of lens development, including paediatric cataract (lens opacity), are also discussed in this section. Secondly, adult lens structure and ultrastructure are covered, as well as the lens as a model for homeostasis and solute exchange. Finally, the papers in the latter part of the special issue review lens pathology, including the lens as a model for normal and pathological ageing, vitreoretinal influences on lens function and cataract and the lens as a model for fibrotic disease. Overall, the articles highlight the lens as a continuing, very important and attractive model system for biologists working in many different research areas.     

Comparison of TRAM and DIEP flap physiology in a rat model

Dynamic and physiologic studies objectively comparing the attributes of the transverse rectus abdominis musculocutaneous (TRAM) and deep inferior epigastric perforator (DIEP) flaps would be most practical in an animal model. This has now been accomplished using the ventral abdomen of the Sprague-Dawley rat. A conventional TRAM flap, a multiple perforator DIEP flap, and a solitary perforator DIEP flap were raised in three equal groups of five rats each. Flow studies using laser Doppler flowmetry demonstrated the highest flow in zone I in the TRAM flap group (87.6 +/- 15.4 percent), which was a statistically significant difference from the multiple perforator DIEP flap group (45.4 +/- 13.3 percent) and the solitary perforator DIEP flap group (43.4 +/- 26.4 percent) (p = 0.005). Flow in zone IV was proportionately lower for all groups, with no significant difference noted between TRAM and DIEP flaps (p = 0.736). Although ultimate flap survival was greatest for the TRAM flap group (96.1 +/- 6.7 percent) when compared with the multiple perforator DIEP flap (79.8 +/- 15.2 percent) or the solitary perforator DIEP flap groups (77.1 +/- 23.0 percent), this difference was not statistically significant (p = 0.183). In summary, relative flow to these rat ventral abdomen models was directly proportional to the number of retained musculocutaneous perforators, but a single perforator only could routinely allow near-total survival.     

A metabolic system-wide characterisation of the pig: a model for human physiology

The pig is a single-stomached omnivorous mammal and is an important model of human disease and nutrition. As such, it is necessary to establish a metabolic framework from which pathology-based variation can be compared. Here, a combination of one and two-dimensional (1)H and (13)C nuclear magnetic resonance spectroscopy (NMR) and high-resolution magic angle spinning (HR-MAS) NMR was used to provide a systems overview of porcine metabolism via characterisation of the urine, serum, liver and kidney metabolomes. The metabolites observed in each of these biological compartments were found to be qualitatively comparable to the metabolic signature of the same biological matrices in humans and rodents. The data were modelled using a combination of principal components analysis and Venn diagram mapping. Urine represented the most metabolically distinct biological compartment studied, with a relatively greater number of NMR detectable metabolites present, many of which are implicated in gut-microbial co-metabolic processes. The major inter-species differences observed were in the phase II conjugation of extra-genomic metabolites; the pig was observed to conjugate p-cresol, a gut microbial metabolite of tyrosine, with glucuronide rather than sulfate as seen in man. These observations are important to note when considering the translatability of experimental data derived from porcine models.     

Prevention of cardiovascular disease in general practice: a proposed model.

A screening model based in general practice for the detection of subjects at risk of premature cardiovascular disease is described. Opportunistic screening is performed by a trained nurse who also gives initial advice on management. Immediate feedback to patients is possible since a rapid dry chemistry technique is used to measure blood cholesterol concentrations. The collation and analysis of data are achieved using a microcomputer. A central deidentified database is incorporated to allow epidemiological studies and intervention strategy evaluations to be made. Nineteen health centres have evaluated the model, and 40,000 subjects have been screened: 10% had diastolic blood pressures of over 95 mm Hg and 15% had a blood cholesterol concentration over 7 mmol/l (270 mg/100 ml) and 2% over 9 mmol/l (347 mg/100 ml). The initial data suggest that the model is acceptable to both health centre personnel and the general public and that the offer of screening is taken up by all elements of the target population.     

Bone biology and physiology: Part II. Clinical correlates

The principles of bone biology and physiology permeate all subspecialty practices in plastic and reconstructive surgery, from hand surgery to aesthetic surgery. Despite its importance in our practices, these topics rarely surface within textbooks, literature reviews, or residency curricula. The authors present the second portion of a two-part review of the important concepts of bone biology and bone physiology relevant to plastic surgery, in an effort to ameliorate this educational gap.