Floodplain lake fish assemblages in the Amazon River: directions in conservation biology

The Neotropical region is renowned for its high biodiversity, and the Amazon River basin contains the highest number of fish species of any river system in the world. In recent years, habitat fragmentation and exploitation of biotic resources have threatened biological integrity and provoked to need for sustainable management and conservation of the Amazon River system. We studied 36 floodplain lakes along 2000 km of the Amazon River. The fish assemblages associated with flood forests are moderately diverse, with low species dominance and reduced populations. To detect nestedness of fish assemblage composition in floodplain lakes, a nested subset analysis was performed on species presence–absence. The incidence matrix (species × lakes) was maximally packed using the Nestedness Temperature Calculator software. The results of ranking lakes and species allow us to establish targets for conservation. Such strategy for sustainable management should be focused on maintaining the Amazonian biodiversity.     

Methanogenesis and methanotrophy within a Sphagnum peatland

Abstract: Methane production and consumption activities were examined in a Massachusetts peatland. Peat from depths of 5–35 cm incubated under anaerobic conditions, produced an average of 2 nmol CH₄ g⁻¹ h⁻¹ with highest rates for peat fractions between 25–30 cm depth. Extracted microbial nucleic acids showed the strongest relative hybridization with a 16S rRNA oligonucleotide probe specific for Archaea with samples from the 25–30 cm depth. In aerobic laboratory incubations, the peat consumed methane with a maximum velocity of 67 nmol CH₄ g⁻¹ h⁻¹ and a K _s of 1.6 μM. Methane consumption activity was concentrated 4–9 cm below the peat surface, which corresponds to the aerobic, partially decomposed region in this peatland. Phospholipid fatty acid analysis of peat fractions demonstrated an abundance of methanotrophic bacteria within the region of methane consumption activity. Increases in temperature up to 30°C produced an increase in methane consumption rates for shallow samples, but not for samples taken from depths greater than 9 cm. Nitrogen fixation experiments were carried out using ¹⁵N₂ uptake in order to avoid problems associated with inhibition of methanotrophy. These experiments demonstrated that methane in peat samples did not stimulate nitrogen fixation activity, nor could activity be correlated with the presence of methanotrophic bacteria in peat fractions.     

Patterns and processes of nestedness in a Great Basin butterfly community

We examined nestedness and potential mechanisms causing that distributional pattern in resident butterfly communities of the Toiyabe Range, a mountain range in the central Great Basin of western North America. We tested whether life history characteristics, including habitat use and vagility, affected the relative degree of nestedness or mean species incidence. We also tested whether nestedness at the level of individual species was independent of life history. Relationships between distributional patterns and habitat use, particularly in ecologically sensitive riparian areas, are relevant to ongoing conservation planning in the Great Basin. The distributional pattern of the 68 resident butterfly species in 19 Toiyabe Range canyons was significantly nested, as was the distribution of all functional subgroups that we tested. Life history affected neither relative nestedness of species groups nor mean species incidence. More than 80% of the individual butterfly species that inhabit the Toiyabe Range had distributions that were more nested than expected. Colonization does not appear to have played an important role in determining the composition of butterfly communities in Toiyabe Range canyons. Likewise, selective dispersal has probably played a minor role in producing nested distributions of Toiyabe Range butterflies. Our results suggest either that impacts to riparian areas are not jeopardizing species viability, or that highly sensitive butterfly species have already been extirpated from the Toiyabe Range. Received: 15 February 1998 / Accepted: 19 December 1998     

冬季森林鸟类对林窗的响应分析

林窗主要指由森林中老龄树死亡或其他偶然因素导致的成熟阶段优势树种死亡,从而造成在林冠层形成空隙的现象。2011年11月—2012年2月,于广西防城金花茶国家级自然保护区,采用定点观察法,就北热带季雨林冬季鸟类对林窗的响应特征及鸟类在林窗和非林窗的分布特征等进行了研究。在林窗记录到鸟类45种,占所有鸟类的84.9%,平均种数为9.6种;在非林窗记录到鸟类39种,占所有鸟类的73.6%,平均种数为5.3种。多元回归表明林窗面积、林窗外10m乔木平均高度、林窗外10m乔木数量、林窗外10m灌木数量、林窗外1m草本平均盖度和裸地比例是林窗影响鸟类多样性的关键因子。总体上,林窗鸟类多样性大于非林窗。另外,林窗对鸟类空间分布影响主要表现在:鸟类的垂直分布以林窗中层和林冠层为主,水平分布以近离和较近离为主,而这种空间分布格局主要是由鸟类取食生态位分化所造成。     

The measure of order and disorder in the distribution of species in fragmented habitat

Species distribution patterns within naturally fragmented habitat have been found to often exhibit patterns of pronounced nestedness. Highly predictable extinction sequences are implied by these nested species distribution patterns, thus the patterns are important to both the philosophy and practice of conservation biology. A simple thermodynamic measure of the order and disorder apparent in the nested patterns is described. The metric offers (i) a measure of the uncertainty in species extinction order, (ii) a measure of relative populational stabilities, (iii) a means of identifying minimally sustainable population sizes, and (iv) an estimate of the historical coherence of the species assemblage. Four presumptions govern the development of the metric and its theory: (i) the fragmented habitat was once whole and originally populated by a single common source biota, (ii) the islands were initially uniform in their habitat heterogeneity and type mix, and have remained so throughout their post-fragmentation history, (iii) no significant clinal (latitudinal) gradation exists across the archipelago so as to promote species turnover across the archipelago, and (iv) all species of interest are equally isolated on all islands. The violation of these conditions promotes species distributions which are idiosyncratic to the general extinction order expected in fragmentation archipelagos. While some random variation in extinction order is to be expected, idiosyncratic distributional patterns differ from randomness and are readily segregatable from such noise. A method of identifying idiosyncratic species and sites is described.     

Atmospheric trajectories and spring bird migration across the Gulf of Mexico

We examined the relationship between the longitude of peak arrival of trans-Gulf migrants on the northern coast of the Gulf of Mexico in spring and wind trajectories over the Gulf at three different altitudes (500, 1,500, and 2,500 m above ground level). We used data from 10 WSR-88D radars (weather surveillance radar-1988-Doppler) from Brownsville, Texas, to Key West, Florida, to record the time and longitude of peak arrival on the northern Gulf coast for four spring migrations (2001–2004). We used the National Oceanic Atmospheric Administration Air Resources Laboratory HYSPLIT transport and dispersion model at the READY Web site to generate backward, 24-h atmospheric trajectories based on archived atmospheric data for each trans-Gulf flight. The trajectories began at the geographic location where radar indicated the greatest concentrations of arriving migrants. Although the longitude of peak arrival varied, peak densities of most trans-Gulf migrants arrived on the northern coast near longitude 95°W. Regression analyses showed that the relationship between the longitude of peak trans-Gulf arrival and the direction of atmospheric trajectory was significant but weak at the 500-m level, where few migrants occurred, and was insignificant for the 1,500- and 2,500-m altitudes, where migrant densities were greater. We conclude that winds aloft over the Gulf have little influence on the longitude of peak trans-Gulf arrival on the northern coast of the Gulf of Mexico, and we speculate that the arrival pattern may reflect the trans-Gulf migration pathways that evolved during the Last Glacial Maximum.     

Disentangling patch and landscape constraints of nested assemblages

The role of the matrix for the functionality of residual patches and therefore for species persistence has been recently recognised. However its influence on assemblage structure and composition is still unclear. We studied the effect of both patch and matrix attributes on community assemblage structure and composition in a fragmented landscape of central Italy. We used bird assemblages as a study model. Birds were sampled in 24 wood patches and distribution patterns were analysed considering both assemblage and guild-level responses. Patch composition and structure together with landscape patterns quantified with GIS were used as explanatory variables. The assemblages appeared to be strongly influenced by the landscape context, both in terms of composition and configuration. The functional connectivity of the patches, in terms of amount of neighbouring borders between woods and hedgerows, the shape of the woods in the matrix, together with the age of the patches, expressed as tree diameter, acted as the essential determinants, and even if the assemblages presented a significant nested structure, seven out of 40 species showed an idiosyncratic distribution. The study of the association between functional guilds and environmental parameters highlighted the influence of ecological constraints on the occurrence of unexpected presences and absences, suggesting the ability of some species to perceive and exploit matrix habitats. The matrix holds the capability to at least mitigate the effects of isolation and habitat loss, and the semi-natural elements of the mosaic may represent a biodiversity reservoir in an otherwise deprived landscape.     

Breeding bird response to long-term wastewater discharge in a northern Michigan peatland

Researchers have monitored avian use of the Houghton Lake Sewer Authority wastewater treatment wetland and a nearby reference site from 1979 to 2007. Morning breeding bird surveys were conducted annually using 100-m belt transects. Annual species richness declined over the 29 years at the treatment site, but remained stable at the reference area. In a 12-year comparison of bird use of treated and reference wetland types, total bird density was highest in treated wetland consisting of cattail and cattail–wet meadow vegetation and lowest on leatherleaf and wet meadow reference types. Although species richness was highest in scrub-shrub wetland, treated wetland containing cattail marsh had significantly higher mean richness than types similar to pretreatment conditions (leatherleaf and wet meadow). Shannon diversity values in treated types dominated by cattail were similar to those in scrub-shrub wetland, but significantly higher than means observed in leatherleaf and wet meadow. Densities of Mallard, Green-winged teal, Virginia Rail, Sora, Wilson's Snipe, Marsh Wren, Swamp Sparrow, Red-winged Blackbird, and Common Grackle were highest at the treatment site in types containing cattail. Highest mean densities of Sedge Wren, Savannah Sparrow, and Northern Harrier occurred in wet meadow or leatherleaf types representative of pretreatment conditions.     

Influence of social status on individual foraging and community structure in a bird guild

We investigated the influence of social interactions on individual foraging behavior and community structure of frugivorous birds in southern Costa Rica. Detailed observations of large, heterospecific feeding assemblages at fruiting trees revealed the existence of an interspecific dominance hierarchy, largely consistent with body and bill size. Social status influenced access to food in several ways. First, subordinate species were interrupted more and tended to have shorter foraging bouts than dominant species (n > 1.000 abouts). Second, analysis of over 7,000 videotaped head movements showed that subordinate species spent a smaller fraction of their foraging bouts actually feeding (as opposed to looking about) than did dominants. Third, when many birds were in a tree simultaneously, the foraging bouts of subordinate species were shortened; this effect was less pronounced or absent for species higher in the dominance hierarchy. Fourth, subordinate species foraged less frequently in mixed-species assemblages than did dominant species. Finally, subordinate species fed disproportionately more in the late afternoon at fruiting trees. The influence of social status appeared to manifest itself at the community level. The species composition of foraging assemblages was compared at isolated fruiting trees situated in an agricultural landscape near to (< 0.5 km) and far from (> 6 km) a large tract of primary forest. Whereas the full complement of avian frugivores foraged at the near trees, visitors to the far trees were predominantly of high social status. We discuss reasons why high social status and associated traits might confer an advantage in exploiting human-dominated habitat.     

The role of skylight polarization in the orientation of a day-migrating bird species

To assess the role of skylight polarization in the orientation system of a day-migrating bird, Yellow-faced Honeyeaters (Lichenostomus chrysops, Meliphagidae) were tested in funnel cages for their directional preferences. In control tests in the natural local geomagnetic field under the clear natural sky, they preferred their normal migratory course. Manipulations of the e-vector by depolarizing the skylight or rotating the axis of polarization failed to affect the orientation as long as the natural geomagnetic field was present. When deprived of magnetic information, the birds continued in their normal migratory direction as long as they had access to information from the natural sky, or when either the sun or polarized light was available. However, when sun was hidden by clouds, depolarizers caused disorientation. — These findings indicate that polarized skylight can be used for orientation when no other known cues are available. However in the hierarchy of cues of this species, the polarization pattern clearly ranks lower than information from the geomagnetic field.     

Seed colour and post-fire bird predation in a Mediterranean pine forest

In a Pinus halepensis Mill. forest, a field experiment was designed to evaluate post-fire seed predation as affected by combinations of seed colour and soil substrates: light grey and black seeds combined with light grey ash, dark grey ash and pale brown sand. A survey of bird species inhabiting the area was also carried out and polyphenolic content of seed coat was assessed in seed lots of different colour. Light grey seeds were observed to be less predated on light grey ash, suggesting eucrypsis as a protective strategy against bird predation. On the contrary, no clear pattern was observed for the predation of black seeds on different substrates. In the study area both bird species breaking the seed coat and eating the endosperm and bird species swallowing the whole seed were monitored. We have estimated that more seeds were swallowed than broken, in all colour categories. Light grey seeds, which were found to have a higher content of polyphenols, were predated more than black seeds when exposed on the same substrate. Thus, no evidence was produced that the amount of polyphenols in seed coat could protect seeds from predation.     

Bat species diversity in a lake archipelago in central Sweden

The bat fauna of 35 islands in a large lake in central Sweden were examined using ultrasound detectors. We tested the hypothesis that there is no difference in species number between the mainland and the island fauna. Eight species were found. Species numbers were analysed against island area, area of some habitats (coniferous forest, deciduous forest, semi-open habitats and open habitats), degree of isolation (distance from mainland and from stepping stones) and time spent searching for bats. Species number increased with area of deciduous forest. Presence of houses tended to increase species number. There seems to be a negative relationship between species number and degree of isolation (nearly significant). The results suggest that at least three species, Myotis brandti (Eversmann, 1845), M. mystacinus (Kuhl, 1819) and Plecotus auritus (Linnaeus, 1758), are negatively affected by forest patchiness. These species occurred mainly on large islands. Thus, the results do not support the hypothesis. The reasons why some species avoid open habitats are discussed.     

Nested subset structure of larval mycophagous fly assemblages: nestedness in a non-island system

Nested subset structure has been studied in archipelagoes and fragmented habitats, and has been attributed to differential colonization and extinction rates among species and nested environmental tolerances. In this experiment, we tested for nestedness in assemblages of mycophagous fly larvae. Twenty mushrooms in each of three size classes (4.8–6.0 g, 10–15 g, 21–32 g) were placed on moist potting soil in experimental cups. The cups were placed in oak and pine forests in Greenville, S.C., USA for 5 days, where they were available to ovipositing flies. Upon collection, the mushrooms were incubated in the laboratory for 3 weeks and all emerging flies were sorted by species, counted, and weighed. A random placement analysis was conducted to determine whether the species richness pattern was a sampling artifact of the species abundance distributions. The actual species richness pattern did not conform to the random placement model; most mushrooms contained significantly fewer species than predicted by random sampling. The communities were strongly nested as measured by two different indices, and the nestedness pattern was related to mushroom size. Small mushrooms usually produced no flies or a single species, Dohrniphora sp. (Phoridae). Medium and large mushrooms typically produced more species-rich communities that usually contained the phorid and Drosophila putrida, D. tripunctata, and Leucophenga varia. This core guild was nested within a more diverse assemblage that included D. falleni, Mycodrosophila dimidiata, a muscid, and two Leptocera sp. (sphaeroceridae). These patterns are tentatively explained in the context of nested desiccation tolerances, mediated by differences in mushroom size.     

Power and metabolic scope of bird flight: a phylogenetic analysis of biomechanical predictions

For flying animals aerodynamic theory predicts that mechanical power required to fly scales as P proportional, variant m (7/6) in a series of isometric birds, and that the flight metabolic scope (P/BMR; BMR is basal metabolic rate) scales as P (scope) proportional, variant m (5/12). I tested these predictions by using phylogenetic independent contrasts from a set of 20 bird species, where flight metabolic rate was measured during laboratory conditions (mainly in wind tunnels). The body mass scaling exponent for P was 0.90, significantly lower than the predicted 7/6. This is partially due to the fact that real birds show an allometric scaling of wing span, which reduces flight cost. P (scope) was estimated using direct measurements of BMR in combination with allometric equations. The body mass scaling of P (scope) ranged between 0.31 and 0.51 for three data sets, respectively, and none differed significantly from the prediction of 5/12. Body mass scaling exponents of P (scope) differed significantly from 0 in all cases, and so P (scope) showed a positive body mass scaling in birds in accordance with the prediction.     

Migratory waterfowls as indicators to assess the protection efficiency in Iran

There are high numbers of endangered birds in Iran. Birds also are indicators of biodiversity in different landscapes and using birds as indicator give us a complete overview about the ecological status of the landscape. In the present study migratory waterfowls were used to identify biodiversity hotspots in Iran. Iran is an interesting place for ornithologists because it is in fact a crossroads of flyways for migratory waterfowls coming from Europe, southern Asia, and Siberia. We predicted the habitat distributions for 27 bird species of Anseriformes in Iran using an ensemble forecasting framework to identify biodiversity hotspots. Moreover, we measured the percentage of overlap between hotspots and protected areas including Ramsar sites. The results showed that suitable habitats for different bird species greatly varied among different ecosystems and they showed dissimilar responses to environmental variables. However, for most species digital elevation model (DEM) was the most important variable in predicting suitable habitats. Our study also revealed that 36.02% of Iran can be considered as suitable habitats for the species and the highest suitability belongs to areas along Zagros and Alborz mountain ranges. Furthermore, the suitable habitats had 7.10% overlap with protected areas and 75% with Ramsar sites. The low overlap between hotspots and protected areas demonstrated the shortage of biodiversity protection in Iran. Therefore, it is essential to select new protected areas based on biodiversity hotspots, and to develop a network of protected areas within those hotspots in Iran.     

Effects of site and species characteristics on nested patterns of species composition in sedge meadows

Biotas of both geographical islands and habitat islands are often nested subsets of the biotas of successively more species-rich islands within the same system. The life history characteristics of a species may determine how that species contributes to the general pattern of species nestedness. Here, I investigate the floras of 56 sedge meadow wetlands in northern Illinois (USA) in order to characterize the degree of nestedness in these communities, determine which individual plant species contribute to the nested pattern, and investigate species characteristics that might be related to nonrandom patterns of distribution in individual plant species. The entire assemblage of species at all sedge meadows was significantly nested. Species richness and area were significantly correlated, and the nested pattern was closely related to site area, suggesting that species drop out of the assemblage in a predictable order as site area decreases. Some individual species exhibited nonrandom distributions across the sites, occurring more often in large, species-rich sites. Large sites were more likely than smaller sites to contain conservative species, i.e., those typical of pristine natural habitat, whereas nonconservative species were distributed more randomly among sites. Nested patterns of distribution of conservative species with respect to site area may result from their high probability of extinction on small sites or from a tendency for required habitats to co-occur on the same large sites. This revised version was published online in June 2006 with corrections to the Cover Date.     

Comparing bird assemblages in large and small fragments of the Atlantic Forest hotspots

The Atlantic Forest (AF) is one of the five most threatened and megadiverse world hotspots. It is arguably the most devastated and highly threatened ecosystem on the planet. The vast scope of habitat loss and extreme fragmentation in the AF hotspots has left intact very few extensive and continuous forested fragments. We compared bird assemblages between small (<100 ha) and large (>6,000 ha) forest remnants, in one of the largest AF remnants in Argentina. We performed 84 point-counts of birds in four large fragments (LF) and 67 points in 25 small fragments (SF). We recorded 4,527 bird individuals belonging to 173 species; 2,632 belonging to 153 species in LF and 1,897 in 124 species in SF. Small fragments suffered a significant loss of bird richness, mainly forest dependent species, but the birds abundance did not decrease, due to an increase in abundance of forest independent and semi-dependent bird species (edge and non forest species) that benefit from forest fragmentation. The bird guilds of frugivores, undestory, terrestrial and midstory insectivores, nectarivores and raptors, and the endemic species of AF were area sensitive, decreasing significantly in richness and abundance in the SF. Terrestrial granivores were the only guild positively affected by forest fragmentation, containing mainly edge species, which forage in open areas or borders including crops. Our first observations on fragmentation effects on bird assemblages in the southernmost Argentinean Atlantic Forests did not validate the hypothesis on pre-adaptation to human disturbances in the bird communities of AF. On the contrary, we observed that forest dependent, endemic and several sensitive bird guilds were strongly affected by fragmentation, putting in evidence the vulnerability to the fragmentation process and the necessity to conserve large remnants to avoid reduction of the high biodiversity of AF birds.     

Taxonomic distinctness and species richness as measures of functional structure in bird assemblages

Most traditional "biodiversity" indices have an uncertain ecological interpretation, unfavourable sampling properties, and excessive data requirements. A new index of taxonomic distinctness (the average evolutionary distance between species in an assemblage) has many advantages over traditional measures, but its ecological interpretation remains unclear. We used published behavioural species data in conjunction with bird atlas data to quantify simple functional metrics (the fraction of species engaged in non-competitive interactions, and the average between-species disparity in habitat preferences) for breeding-bird assemblages in Europe and North America. We then analysed correlations of functional metrics with taxonomic distinctness and species richness, respectively. All functional metrics had weak, positive correlations with species richness. In contrast, correlations between functional metrics and taxonomic distinctness ranged from slightly negative to strongly positive, depending on the relative habitat heterogeneity, and on the resource involved in the between-species interaction. Strong positive correlations between taxonomic distinctness and the fraction of interactive species occurred for resources with few producer species per consumer species, and we suggest that taxonomic distinctness is consistently correlated with conservation worth. With its favourable sampling properties and data requirements, this taxonomic distinctness measure is a promising tool for biodiversity research and for environmental monitoring and management.     

Isolation,patch size and matrix effects on bird assemblages in forest reserves

Habitat fragmentation is one of the most studied topics in ecology but our knowledge is still limited particularly concerning matrix effects on species distribution in a human-dominated landscape. We tested the ability of random sampling hypothesis, colonization–extinction dynamics and matrix-related concepts to explain the variation in species richness, total bird density and community composition in old-forest bird assemblages in two contrasting landscapes. We collected data on breeding bird abundances from 66 old-growth forest reserves in NE Finland and six larger areas in adjacent Russian Karelia using the line transect method. In Finland, protected old-forest patches are embedded in a matrix dominated by young regeneration stands. In Russia, study areas were situated in continuous, old forest dominated landscapes. Bird assemblages in old-forest patches embedded in human-modified matrix in Finland were not random samples from Russian bird assemblages. In the Finnish assemblages, species richness was lower and total bird density higher. Species richness declined with increasing distance (isolation) to Russia. Bird assemblages in large forest reserves in Finland close to Russia were structurally more similar to assemblages in the continuous reference landscape than those in small and more distant reserves. The results support the idea that several mechanisms related to colonisation–extinction dynamics and to matrix resource availability influence species distribution in fragmented landscapes but in species-specific ways. We conclude that even though small and isolated protected areas may foster high relative bird species density their ecological integrity is compromised, and therefore, improving matrix quality around reserves may lead to considerable conservation benefits.