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Monitoring the demographics and genetics of reintroduced populations is critical to evaluating reintroduction success, but species ecology and the landscapes that they inhabit often present challenges for accurate assessments. If suitable habitats are restricted to hierarchical dendritic networks, such as river systems, animal movements are typically constrained and may violate assumptions of methods commonly used to estimate demographic parameters. Using genetic detection data collected via fecal sampling at latrines, we demonstrate applicability of the spatial capture–recapture (SCR) network distance function for estimating the size and density of a recently reintroduced North American river otter (Lontra canadensis) population in the Upper Rio Grande River dendritic network in the southwestern United States, and we also evaluated the genetic outcomes of using a small founder group (n = 33 otters) for reintroduction. Estimated population density was 0.23–0.28 otter/km, or 1 otter/3.57–4.35 km, with weak evidence of density increasing with northerly latitude (β = 0.33). Estimated population size was 83–104 total otters in 359 km of riverine dendritic network, which corresponded to average annual exponential population growth of 1.12–1.15/year since reintroduction. Growth was ≥40% lower than most reintroduced river otter populations and strong evidence of a founder effect existed 8–10 years post‐reintroduction, including 13–21% genetic diversity loss, 84%–87% genetic effective population size decline, and rapid divergence from the source population (F ST accumulation = 0.06/generation). Consequently, genetic restoration via translocation of additional otters from other populations may be necessary to mitigate deleterious genetic effects in this small, isolated population. Combined with non‐invasive genetic sampling, the SCR network distance approach is likely widely applicable to demogenetic assessments of both reintroduced and established populations of multiple mustelid species that inhabit aquatic dendritic networks, many of which are regionally or globally imperiled and may warrant reintroduction or augmentation efforts.  相似文献   

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Density estimation for marine mammal species is performed primarily using visual distance sampling or capture‐recapture. Minke whales in Hawaiian waters are very difficult to sight; however, they produce a distinctive “boing” call, making them ideal candidates for passive acoustic density estimation. We used an array of 14 bottom‐mounted hydrophones, distributed over a 60 × 30 km area off Kauai, Hawaii, to estimate density during 12 d of recordings in early 2006. We converted the number of acoustic cues (i.e., boings) detected using signal processing software into a cue density by accounting for the false positive rate and probability of detection. The former was estimated by manual validation, the latter by applying spatially explicit capture‐recapture (SECR) methods to a subset of data where we had determined which hydrophones detected each call. Estimated boing density was 130 boings per hour per 10,000 km2 (95% CI 104–163). Little is known about the population's acoustic behavior, so conversion from boing to animal density is difficult. As a demonstration of the method, we used a tentative boing rate of 6.04 boings per hour, from a single animal tracked in 2009, to give an estimate of 21.5 boing‐calling minke whales per 10,000 km2.  相似文献   

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American black bears (Ursus americanus) are an iconic wildlife species in the southern Appalachian highlands of the eastern United States and have increased in number and range since the early 1980s. Given an increasing number of human-bear conflicts in the region, many management agencies have liberalized harvest regulations to reduce bear populations to socially acceptable levels. Wildlife managers need reliable population data for assessing the effects of management actions for this high-profile species. Our goal was to use DNA extracted from hair collected at barbed-wire enclosures (i.e., hair traps) to identify individual bears and then use spatially explicit capture-recapture methods to estimate female black bear density, abundance, and harvest rate. We established 888 hair traps across 66,678 km2 of the southern Appalachian highlands in Georgia, North Carolina, South Carolina, and Tennessee, USA, in 2017 and 2018, arranged in 174 clusters of 2–9 traps/cluster. We collected 9,113 hair samples from those sites over 6 weeks of sampling, of which 1,954 were successfully genotyped to 462 individual female bears. Our spatially explicit estimator included a percent forest covariate to explain inhomogeneous bear density across the region. Densities ranged up to 0.410 female bears/km2 and regional abundance was 5,950 (95% CI = 4,988–7,098) female bears. Based on hunter kill data from 2016 to 2018, mean annual harvest rates for females were 12.7% in Georgia, 17.6% in North Carolina, 17.6% in South Carolina, and 22.8% in Tennessee. Our estimated harvest rates for most states approached or exceeded theoretical maximum sustainable levels, and population trend data (i.e., bait-station indices) indicated decreasing growth rates since about 2009. These data suggest that the increased harvest goals and poor hard mast production over a series of prior years reduced bear population abundance in many states. We were able to obtain reasonable population abundance and density estimates because of spatially explicit capture-recapture methods, cluster sampling, and a large spatial extent. Continued monitoring of bear populations (e.g., annual bait-station surveys and periodic population estimation using spatially explicit methods) by state jurisdictions would help to ensure that population trajectories are consistent with management goals. © 2021 The Wildlife Society.  相似文献   

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The frequency of black bear (Ursus americanus) sightings, vehicle collisions, and nuisance incidents in the coastal region of South Carolina has increased over the past 4 decades. To develop the statewide Black Bear Management and Conservation Strategy, the South Carolina Department of Natural Resources needed reliable information for the coastal population. Because no such data were available, we initiated a study to determine population density and genetic structure of black bears. We selected 2 study areas that were representative of the major habitat types in the study region: Lewis Ocean Bay consisted primarily of Carolina Bays and pocosin habitats, whereas Carvers Bay was representative of extensive pine plantations commonly found in the region. We established hair snares on both study areas to obtain DNA from hair samples during 8 weekly sampling periods in 2008 and again in 2009. We used genotypes to obtain capture histories of sampled bears. We estimated density using spatially explicit capture–recapture (SECR) models and used information-theoretic procedures to fit parameters for capture heterogeneity and behavioral responses and to test if density and model parameters varied by year. Model-averaged density was 0.046 bears/km2 (SE = 0.011) for Carvers Bay and 0.339 bears/km2 (SE = 0.056) for Lewis Ocean Bay. Next, we sampled habitat covariates for all locations in the SECR sampling grid to derive spatially explicit estimates of density based on habitat characteristics. Addition of habitat covariates had substantial support, and accounted for differences in density between Carvers Bay and Lewis Ocean Bay; black bear density showed a negative association with the area of pine forests (4.5-km2 scale) and a marginal, positive association with the area of pocosin habitat (0.3-km2 scale). Bear density was not associated with pine forest at a smaller scale (0.3-km2), nor with major road density or an index of largest patch size. Predicted bear densities were low throughout the coastal region and only a few larger areas had high predicted densities, most of which were centered on public lands (e.g., Francis Marion National Forest, Lewis Ocean Bay). We sampled a third bear population in the Green Swamp area of North Carolina for genetic structure analyses and found no evidence of historic fragmentation among the 3 sampled populations. Neither did we find evidence of more recent barriers to gene exchange; with the exception of 1 recent migrant, Bayesian population assignment techniques identified only a single population cluster that incorporated all 3 sampled areas. Bears in the region may best be managed as 1 population. If the goal is to maintain or increase bear densities, demographic connectivity of high-density areas within the low-density landscape matrix is a key consideration and managers would need to mitigate potential impacts of planned highway expansions and anticipated development. Because the distribution of black bears in coastal South Carolina is not fully known, the regional map of potential black bear density can be used to identify focal areas for management and sites that should be surveyed for occupancy or where more intensive studies are needed. © 2012 The Wildlife Society.  相似文献   

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Invasive rats on oceanic islands impact a large number of native species. Control programmes, and in many cases complete eradication, are used to alleviate these impacts. Basic data on rodent biology facilitate the design of control or eradication programmes, and is particularly required for programmes on tropical islands where such data are missing. Here we test for interactive effects of habitat and season that may alter black rat (Rattus rattus) space use dynamics and inform rodent management on two tropical islands. Five years of summer and winter trapping data were analysed using spatially explicit capture–recapture to calculate rat space-use and overlap, coupled with spool and line experiments ground-truthing microhabitat use. Variation in individual rat space use is primarily driven by sex and bottom-up trophic effects of seasonal rainfall on food resources, but is altered by island-specific contexts. In the absence of other introduced mammals, rats tend to have stable range overlap throughout the year but home range sizes fluctuate seasonally with rat density. The presence of other introduced mammals causes predictable greater seasonal fluctuations in rat space-use, putatively a behavioural adjustment to feral cats (Felis catus) diet-switching to rats from seasonal influxes of their alternative seabird prey. We identify winter as the recommended treatment period on both islands and discuss bait broadcast strategies.  相似文献   

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Investigating individual‐based habitat settlement decisions is a central theme in ecology, yet studies that quantify density‐dependent habitat selection or tie fitness to resource selection decisions remain rare. We quantified habitat selection in golden‐mantled ground squirrels (Callospermophilus lateralis) across two spatial scales (home‐range placement, and occurrence within the home range) by using 11 consecutive years of data on individual space use, and we used resource selection functions and multilevel modeling to address how habitat preferences may be influenced by density or linked to fitness outcomes. Squirrels preferred dry meadow over other habitat types (wet meadow, aspen, spruce, and willow) at both spatial scales. Squirrels were more likely to use dry meadow that contained shorter vegetation and vision‐enhancing prominences such as rocks (“perches”). The use of dry meadow at each scale was not influenced by changes in density. The use of dry meadow did not lead to increased litter size, pre‐hibernation mass, or survival. However, squirrels that experienced a greater number of perches or lower local densities had higher survival rates. Our results suggest that a lack of visual obstruction, probably facilitating detection of predators, drives habitat selection in this system. Surprisingly, squirrels maintained their preference for dry meadow as density increased, and they experienced reduced survival as a result. This work furthers our understanding about the causes and consequences of changes in habitat use, informing wildlife management and conservation.  相似文献   

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The cyclic population dynamics of vole and predator communities is a key phenomenon in northern ecosystems, and it appears to be influenced by climate change. Reports of collapsing rodent cycles have attributed the changes to warmer winters, which weaken the interaction between voles and their specialist subnivean predators. Using population data collected throughout Finland during 1986–2011, we analyse the spatio-temporal variation in the interactions between populations of voles and specialist, generalist and avian predators, and investigate by simulations the roles of the different predators in the vole cycle. We test the hypothesis that vole population cyclicity is dependent on predator–prey interactions during winter. Our results support the importance of the small mustelids for the vole cycle. However, weakening specialist predation during winters, or an increase in generalist predation, was not associated with the loss of cyclicity. Strengthening of delayed density dependence coincided with strengthening small mustelid influence on the summer population growth rates of voles. In conclusion, a strong impact of small mustelids during summers appears highly influential to vole population dynamics, and deteriorating winter conditions are not a viable explanation for collapsing small mammal population cycles.  相似文献   

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Predation by feral cats (Felis catus) has caused the extinction of many native species in Australia and globally. There is growing evidence that the impacts of feral cats can be amplified in post-fire environments, as cats are drawn to hunt in or around recently burnt areas and are also more effective hunters in open habitats. In 2018–2019, we established arrays of camera traps to estimate the abundance of feral cats on Kangaroo Island, South Australia. Much of the island (including five of our seven survey sites) was subsequently burnt in a severe wildfire (December 2019–February 2020). We re-sampled the sites 3–8 months post-fire (seven sites) and 11–12 months post-fire (three sites). At two unburnt sites sampled post-fire, it was possible to produce density estimates of cats using a spatially explicit capture–recapture approach. Where estimating density was not possible (due to low detections or individual cats not being distinguishable), the number of individuals and percentage of trap nights with detections was compared between the sampling periods. Some low-level cat control occurred within 2 km of three of the seven arrays (all within the burn scar) within 3 months of the fire. Across the five burnt sites, there was a decline in cat detections post-fire (including those without post-fire cat control). At 3–8 months post-fire, there was, on average, a 57% reduction in the number of individual cats, and a 65% reduction in the number of nights with cat detections, relative to pre-fire levels. Although cat detections declined following the fire, reduced population sizes of prey species and reduced cover as a result of the fire might still mean that cat predation is a threat to some surviving prey species. Management that reduces feral cat predation pressure on wildlife following wildfire should enhance the likelihood of post-fire wildlife persistence and recovery.  相似文献   

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Reliable estimation of the size or density of wild animal populations is very important for effective wildlife management, conservation and ecology. Currently, the most widely used methods for obtaining such estimates involve either sighting animals from transect lines or some form of capture‐recapture on marked or uniquely identifiable individuals. However, many species are difficult to sight, and cannot be easily marked or recaptured. Some of these species produce readily identifiable sounds, providing an opportunity to use passive acoustic data to estimate animal density. In addition, even for species for which other visually based methods are feasible, passive acoustic methods offer the potential for greater detection ranges in some environments (e.g. underwater or in dense forest), and hence potentially better precision. Automated data collection means that surveys can take place at times and in places where it would be too expensive or dangerous to send human observers. Here, we present an overview of animal density estimation using passive acoustic data, a relatively new and fast‐developing field. We review the types of data and methodological approaches currently available to researchers and we provide a framework for acoustics‐based density estimation, illustrated with examples from real‐world case studies. We mention moving sensor platforms (e.g. towed acoustics), but then focus on methods involving sensors at fixed locations, particularly hydrophones to survey marine mammals, as acoustic‐based density estimation research to date has been concentrated in this area. Primary among these are methods based on distance sampling and spatially explicit capture‐recapture. The methods are also applicable to other aquatic and terrestrial sound‐producing taxa. We conclude that, despite being in its infancy, density estimation based on passive acoustic data likely will become an important method for surveying a number of diverse taxa, such as sea mammals, fish, birds, amphibians, and insects, especially in situations where inferences are required over long periods of time. There is considerable work ahead, with several potentially fruitful research areas, including the development of (i) hardware and software for data acquisition, (ii) efficient, calibrated, automated detection and classification systems, and (iii) statistical approaches optimized for this application. Further, survey design will need to be developed, and research is needed on the acoustic behaviour of target species. Fundamental research on vocalization rates and group sizes, and the relation between these and other factors such as season or behaviour state, is critical. Evaluation of the methods under known density scenarios will be important for empirically validating the approaches presented here.  相似文献   

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Complex dynamics of animal populations often involve deterministic and stochastic components. A fascinating example is the variation in magnitude of 2-year cycles in abundances of pink salmon (Oncorhynchus gorbuscha) stocks along the North Pacific rim. Pink salmon have a 2-year anadromous and semelparous life cycle, resulting in odd- and even-year lineages that occupy the same habitats but are reproductively isolated in time. One lineage is often much more abundant than the other in a given river, and there are phase switches in dominance between odd- and even-year lines. In some regions, the weak line is absent and in others both lines are abundant. Our analysis of 33 stocks indicates that these patterns probably result from stochastic perturbations of damped oscillations owing to density-dependent mortality caused by interactions between lineages. Possible mechanisms are cannibalism, disease transmission, food depletion and habitat degradation by which one lineage affects the other, although no mechanism has been well-studied. Our results provide comprehensive empirical estimates of lagged density-dependent mortality in salmon populations and suggest that a combination of stochasticity and density dependence drives cyclical dynamics of pink salmon stocks.  相似文献   

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Spatial capture–recapture (SCR) models are a relatively recent development in quantitative ecology, and they are becoming widely used to model density in studies of animal populations using camera traps, DNA sampling and other methods which produce spatially explicit individual encounter information. One of the core assumptions of SCR models is that individuals possess home ranges that are spatially stationary during the sampling period. For many species, this assumption is unlikely to be met and, even for species that are typically territorial, individuals may disperse or exhibit transience at some life stages. In this paper we first conduct a simulation study to evaluate the robustness of estimators of density under ordinary SCR models when dispersal or transience is present in the population. Then, using both simulated and real data, we demonstrate that such models can easily be described in the BUGS language providing a practical framework for their analysis, which allows us to evaluate movement dynamics of species using capture–recapture data. We find that while estimators of density are extremely robust, even to pathological levels of movement (e.g., complete transience), the estimator of the spatial scale parameter of the encounter probability model is confounded with the dispersal/transience scale parameter. Thus, use of ordinary SCR models to make inferences about density is feasible, but interpretation of SCR model parameters in relation to movement should be avoided. Instead, when movement dynamics are of interest, such dynamics should be parameterized explicitly in the model.  相似文献   

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In 1988–1989, 32 bobcats Lynx rufus were reintroduced to Cumberland Island (CUIS), Georgia, USA, from which they had previously been extirpated. They were monitored intensively for 3 years immediately post‐reintroduction, but no estimation of the size or genetic diversity of the population had been conducted in over 20 years since reintroduction. We returned to CUIS in 2012 to estimate abundance and effective population size of the present‐day population, as well as to quantify genetic diversity and inbreeding. We amplified 12 nuclear microsatellite loci from DNA isolated from scats to establish genetic profiles to identify individuals. We used spatially explicit capture–recapture population estimation to estimate abundance. From nine unique genetic profiles, we estimate a population size of 14.4 (SE = 3.052) bobcats, with an effective population size (Ne) of 5–8 breeding individuals. This is consistent with predictions of a population viability analysis conducted at the time of reintroduction, which estimated the population would average 12–13 bobcats after 10 years. We identified several pairs of related bobcats (parent‐offspring and full siblings), but ~75% of the pairwise comparisons were typical of unrelated individuals, and only one individual appeared inbred. Despite the small population size and other indications that it has likely experienced a genetic bottleneck, levels of genetic diversity in the CUIS bobcat population remain high compared to other mammalian carnivores. The reintroduction of bobcats to CUIS provides an opportunity to study changes in genetic diversity in an insular population without risk to this common species. Opportunities for natural immigration to the island are limited; therefore, continued monitoring and supplemental bobcat reintroductions could be used to evaluate the effect of different management strategies to maintain genetic diversity and population viability. The successful reintroduction and maintenance of a bobcat population on CUIS illustrates the suitability of translocation as a management tool for re‐establishing felid populations.  相似文献   

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Spider monkey communities are classic fission-fusion primate societies. I present data suggesting that spider monkeys (Ateles chamek) at Lago Caiman are territorial; adult males traveled further and faster than adult females and subgroup size was significantly higher in boundary areas of the spider monkey territory where intercommunity disputes were observed than in non-boundary areas. I then go on to examine data from 20 Ateles communities distributed across 14 study sites and five species to investigate how a series of demographic, ecological and geographical parameters influence the number of males in a given spider monkey community. Analyses suggest that the number of males is not significantly related to the number of females in a community, the area of the community home range, or the total perimeter length of the community boundary. However, risky boundary perimeter length, or the length of perimeter that directly borders another spider monkey community, explains 88% of observed variations in the number of males in each community. I discuss the results in relation to spider monkey ecology and territoriality, as well as the potential of this relationship for explaining chimpanzee (Pan) behavior given their extremely similar fruit specialist, male philopatry, territoriality and fission-fusion social system.  相似文献   

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Population density data on depleted and endangered wildlife species are essential to assure their effective management and, ultimately, conservation. The European wildcat is an elusive and threatened species inhabiting the Iberian Peninsula, with fragmented populations and living in low densities. We fitted spatial capture–recapture models on camera-trap data, to provide the first estimate of wildcat density for Portugal and assess the most influential drivers determining it. The study was implemented in Montesinho Natural Park (NE Portugal), where we identified nine individuals, over a total effort of 3,477 trap-nights. The mean density estimate was 0.032 ± 0.012 wildcat/km2, and density tended to increase with distance to humanized areas, often linked to lower human disturbance and domestic cat presence, with forest and herbaceous vegetation cover and with European rabbit abundance. Although, this density estimate is within the range of values estimated for protected areas elsewhere in the Iberian Peninsula, our estimates are low at the European level. When put in context, our results highlight that European wildcats may be living in low population densities across the Iberian Mediterranean biogeographic region. No phenotypic domestic or hybrid cats were detected, suggesting potentially low admixture rates between the two species, although genetic sampling would be required to corroborate this assertion. We provide evidence that Montesinho Natural Park may be a suitable area to host a healthy wildcat population, and thus be an important protected area in this species' conservation context.  相似文献   

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