Influence of forest development phase on centipede diversity in managed beech forests in Slovenia

Biodiversity in managed forests depends on management practices that determine the forest structure. The influence of stand structure on centipede diversity was investigated by comparing centipede communities from different forest development phases. Using the quadrat counts method, soil samples were taken thrice during 2000 (in spring, summer and autumn) from a deforested area and three evenly aged beech stands (juvenile, pole and timber phases) in managed beech forests in Slovenia. The characteristics of centipede communities and the similarities among them were estimated. The collection comprised 1150 centipedes representing 32 species. At a single site, 10–24 species were found. The average density was between 22 and 808 individuals per m². Differences among communities from different sites were found. The highest species number and abundance were found in the juvenile phase and the lowest in the deforested area. The occurrence of species differed among phases, but none of the species found with a high incidence in one development phase was restricted to that phase. The composition of the centipede community was more sensitive to the successional status of the forest than to the season. A comparison with differently structured forest was made, which suggests that homogenisation leads to reduced centipede diversity. To preserve biodiversity and healthy forest functioning, the maintenance of heterogeneity within a forest stand should be an important focus of management operations.     

Monitoring of white-rot fungus during bioremediation of polychlorinated dioxin-contaminated fly ash

Bioremediation is a low-cost treatment alternative for the cleanup of polychlorinated-dioxin-contaminated soils and fly ash when pollution spread is wide-ranging. An interesting fungus, Ceriporia sp. MZ-340, with a high ability to degrade dioxin, was isolated from white rotten wood of a broadleaf tree from Kyushu Island in Japan. We have attempted to use the fungus for bioremediation of polychlorinated-dioxin-contaminated soil on site. However, we have to consider that this trial has the potential problem of introducing a biohazard to a natural ecosystem if this organism is naturalized. We have therefore developed a monitoring system for the introduced fungus as a part of the examination and evaluation of bioremediation in our laboratory. We have also developed a PCR-based assay to reliably detect the fungus at the bioremediation site. DNA isolated from the site was amplified by PCR using a specific primer derived from internal transcribed spacer region (ITS: ITS1, 5.8S rDNA and ITS2) sequences of Ceriporia sp. MZ-340. We successfully monitored Ceriporia sp. MZ-340 down to 100 fg/µl DNA and down to 2 mg/g mycelium. We also successfully monitored the fungus specifically at the bioremediation site. The polychlorinated dibenzo-p-dioxin and polychlorinated dibenzofuran content was observed to decrease in response to treatment with the fungus. The species-specific PCR technique developed in the present work is useful in evaluating the possibility of on-site bioremediation using the fungus Ceriporia sp. MZ-340.     

Recovery of rain forest soil seed banks under different reforestation pathways in eastern Australia

Summary Seed availability is a major factor limiting the recruitment of rain forest to cleared land, but little is known about the composition of the soil seed bank under different reforestation pathways. We quantified changes in the viable soil seed bank following rain forest clearing and pasture establishment and subsequent reforestation in subtropical eastern Australia. Major reforestation pathways in the region include planting of a diverse suite of native trees for ecological restoration purposes, autogenic regrowth dominated by the non‐native tree Camphor Laurel (Cinnamomum camphora) and management of this regrowth to accelerate the development of a native tree community. These pathways differ considerably in cost: restoration plantings are expensive, autogenic regrowth is free, whilst managing regrowth generally costs much less than restoration plantings. We surveyed five sites within each of three reforestation pathways as well as reference sites in remnant rain forest and pasture. The composition of the seed bank was determined by germinating plants from soil samples collected from each site. Germinants were classified into several functional groups according to life form, origin, dispersal mode and successional stage. The majority of functional groups varied significantly in abundance or richness between rain forest and pasture sites. Most of the functional groups that varied between rain forest and pasture were restored to values similar to rain forest by at least one of the three reforestation pathways examined. The species richness of native woody plants in the soil seed bank was slightly higher in restoration plantings than in autogenic or managed regrowth; nevertheless, the species richness and abundance of native woody plants and vines were higher in the seed bank of autogenic regrowth than pasture, and both attributes were enhanced by the management of regrowth sites. The results of this study show that autogenic regrowth can make an important contribution to rain forest restoration at a landscape scale. The optimal reforestation approach or mix of approaches will depend on the desired rate of recovery and the resources available for restoration.     

Spatio-Temporal Dynamic of Tuber magnatum Mycelium in Natural Truffle Grounds

Tuber magnatum produces the world''s most expensive truffle. This fungus produces very rare ectomycorrhizas which are difficult or even impossible to detect in the field. A “real-time” PCR assay was recently developed to quantify and to track T. magnatum mycelium in soil. Here, this technique was used to investigate the spatial distribution of T. magnatum extra-radical mycelium in soil productive patches and its dynamic across seasons. This study was carried out in four different natural T. magnatum truffle grounds located in different Italian regions. During the fruiting seasons, the amount of T. magnatum mycelium was significantly higher around the fruiting points and decreased going farther away from them. Moreover, T. magnatum mycelium inside the productive patches underwent seasonal fluctuations. In early spring, the amount of T. magnatum mycelium was significantly higher than in summer. In summer, probably due to the hot and dry season, T. magnatum mycelium significantly decreased, whereas in autumn it increased again and was concentrated at the putative fruiting points. These results give new insights on T. magnatum ecology and are useful to plan the most appropriate sampling strategy for evaluating the management of a truffle ground.     

Limited transfer of nitrogen between wood decomposing and ectomycorrhizal mycelia when studied in the field

Transfer of ¹⁵N between interacting mycelia of a wood-decomposing fungus (Hypholoma fasciculare) and an ectomycorrhizal fungus (Tomentellopsis submollis) was studied in a mature beech (Fagus sylvatica) forest. The amount of ¹⁵N transferred from the wood decomposer to the ectomycorrhizal fungus was compared to the amount of ¹⁵N released from the wood-decomposing mycelia into the soil solution as ¹⁵N-NH₄. The study was performed in peat-filled plastic containers placed in forest soil in the field. The wood-decomposing mycelium was growing from an inoculated wood piece and the ectomycorrhizal mycelium from an introduced root from a mature tree. The containers were harvested after 41 weeks when physical contact between the two foraging mycelia was established. At harvest, ¹⁵N content was analyzed in the peat (total N and ¹⁵NH₄ ⁺) and in the mycorrhizal roots. A limited amount of ¹⁵N was transferred to the ectomycorrhizal fungus and this transfer could be explained by ¹⁵NH₄ ⁺ released from the wood-decomposing fungus without involving any antagonistic interactions between the two mycelia. Using our approach, it was possible to study nutritional interactions between basidiomycete mycelia under field conditions and this and earlier studies suggest that the outcomes of such interactions are highly species-specific and depend on environmental conditions such as resource availability.     

Detection and quantification of Plectosphaerella cucumerina,a potential biological control agent of potato cyst nematodes,by using conventional PCR,real-time PCR,selective media,and baiting

Potato cyst nematodes (PCN) are serious pests in commercial potato production, causing yield losses valued at approximately $300 million in the European Community. The nematophagous fungus Plectosphaerella cucumerina has demonstrated its potential as a biological control agent against PCN populations by reducing field populations by up to 60% in trials. The use of biological control agents in the field requires the development of specific techniques to monitor the release, population size, spread or decline, and pathogenicity against its host. A range of methods have therefore been developed to monitor P. cucumerina. A species-specific PCR primer set (PcCF1-PcCR1) was designed that was able to detect the presence of P. cucumerina in soil, root, and nematode samples. PCR was combined with a bait method to identify P. cucumerina from infected nematode eggs, confirming the parasitic ability of the fungus. A selective medium was adapted to isolate the fungus from root and soil samples and was used to quantify the fungus from field sites. A second P. cucumerina-specific primer set (PcRTF1-PcRTR1) and a Taqman probe (PcRTP1) were designed for real-time PCR quantification of the fungus and provided a very sensitive means of detecting the fungus from soil. PCR, bait, and culture methods were combined to investigate the presence and abundance of P. cucumerina from two field sites in the United Kingdom where PCN populations were naturally declining. All methods enabled differences in the activity of P. cucumerina to be detected, and the results demonstrated the importance of using a combination of methods to investigate population size and activity of fungi.     

Arbuscular mycorrhizal propagules in soils from a tropical forest and an abandoned cornfield in Quintana Roo, Mexico: visual comparison of most-probable-number estimates

The present study was aimed at comparing the number of arbuscular mycorrhizal fungi (AMF) propagules found in soil from a mature tropical forest and that found in an abandoned cornfield in Noh-Bec Quintana Roo, Mexico, during three seasons. Agricultural practices can dramatically reduce the availability and viability of AMF propagules, and in this way delay the regeneration of tropical forests in abandoned agricultural areas. In addition, rainfall seasonality, which characterizes deciduous tropical forests, may strongly influence AMF propagules density. To compare AMF propagule numbers between sites and seasons (summer rainy, winter rainy and dry season), a “most probable number” (MPN) bioassay was conducted under greenhouse conditions employing Sorgum vulgare L. as host plant. Results showed an average value of 3.5 ± 0.41 propagules in 50 ml of soil for the mature forest while the abandoned cornfield had 15.4 ± 5.03 propagules in 50 ml of soil. Likelihood analysis showed no statistical differences in MPN of propagules between seasons within each site, or between sites, except for the summer rainy season for which soil from the abandoned cornfield had eight times as many propagules compared to soil from the mature forest site for this season. Propagules of arbuscular mycorrhizal fungi remained viable throughout the sampling seasons at both sites. Abandoned areas resulting from traditional slash and burn agriculture practices involving maize did not show a lower number of AMF propagules, which should allow the establishment of mycotrophic plants thus maintaining the AMF inoculum potential in these soils.     

Aerial Transport of Keratinaceous Substrate and Distribution of the Fungus Geomyces pannorum in Antarctic Soils

Abstract Aerobiological sampling was conducted year-round at three sites on Signy Island, maritime Antarctic, between December 1992 and January 1994, and during the summer at a fourth coastal site. The concentrations of keratinaceous particles were monitored. Feather fragments were the most abundant of all particle types trapped. Seal hairs were also common, particularly on the coast. Numbers of both particle types were most common in the air in summer. The Antarctic soil fungus Geomyces pannorum, which is able to utilize keratin-based substrates, was also present in aerobiological samples on Signy Island. G. pannorum was only found during early winter on the year-round sampling sites. It was more abundant during summer in the air at the coastal site, which was more heavily influenced by seals, birds and humans. Skuas were swabbed when they returned to the island early in summer. G. pannorum was recovered in culture, suggesting that these birds may act as vectors for the transport of microorganisms between Antarctica and more northern landmasses. Organic material deposited on snow was concentrated on the soil at the edge of the ice cap by melt wash, making additional keratin and other organic substrates available to soil microorganisms. Received: 4 January 1998; Accepted: 25 February 1998     

Testing Lobaria pulmonaria (L.) Hoffm. as an indicator of lichen conservation importance of Italian forests

In Italy, many lichen species rare at the national level share their ecological requirements with Lobaria pulmonaria. The aim of this work is to test this lichen as a potential indicator for assessing forest sites which are worthy of conservation for lichens in Italy. The hypothesis to be tested is that stands hosting large and viable populations of this lichen also host nationally rare and sensitive lichen species. The study was carried out in two large forested areas of Italy under different bioclimatic conditions and with different forest types: Cansiglio Forest, in NE Italy, and Cilento in SW Italy. Three types of stands characterized by different abundance levels of L. pulmonaria were identified in each site. Ten plots for each type of stand were surveyed in each site. Macrolichens were surveyed on a total of 180 trees. The abundance of L. pulmonaria proved to be a valuable indicator of forest stands hosting nationally rare lichen species and cyanolichens in different forest types and in different bioclimatic conditions. Significant differences in species richness, in the occurrence and abundance of nationally rare lichen species and cyanolichens, and in species composition were found in both sites among stands with different levels of L. pulmonaria. Results are expected to contribute to the development of more lichen-oriented criteria in nature protection policies.     

Effects of vegetation change and soil disturbance on ectomycorrhizas ofBetula platyphylla var.japonica: A test using seedlings planted in soils taken from various sites

The occurrence and character of different types of ectomycorrhizas of birch seedlings were investigated in soils from three naturally regenerating birch stands: a forest site, a clear-cut site, and a site recently disturbed by plowing. Birch grown in soil from an evergreen broad-leaved forest without birch was also studied. The rate of ectomycorrhizal formation in the soil from the evergreen broad-leaved forest was lower than that in the soil from the other three sites. The ectomycorrhizal formation of seedlings grown in soil from the clear-cut and plowed sites were the same as or higher than that in soil from the birch forest site. The largest number of ectomycorrhizal types were formed in soil from the birch forest site. In the soil from the plowed site, only one type of ectomycorrhiza was formed, and it was different from the dominant type formed in soils from the birch forest site and the clear-cut site. The results of this investigation showed that equal levels of ectomycorrhizas were formed in soils from the different birch stands, but the types formed were different among those sites. It is likely that the different ectomycorrhizal fungi were better adapted to the soil conditions at each of those sites.     

Diversity of pselaphine beetles (Coleoptera: Staphylinidae: Pselaphinae) in eastern Thailand

Pselaphine beetles (Coleoptera: Staphylinidae: Pselaphinae) are cosmopolitan, species‐rich, and yet poorly studied, particularly in the tropics. We sampled beetles in three types of primary forest and two types of disturbed forest habitats in eastern Thailand to assess the utility of pselaphine beetles as bioindicators of forest disturbance. We simultaneously measured leaf litter mass, soil moisture, soil acidity and canopy cover at each site to infer which environmental factors affect pselaphine beetle diversity and abundance. At each site, pselaphine beetles were extracted from ten 1 m² samples of leaf litter and soil with Tullgren funnels. We sampled 1867 adult beetles representing six supertribes, 51 genera and 114 morphospecies; 7% of the genera and 92% of the species were undescribed. Forest types differed significantly in species richness, abundance, diversity and evenness. Primary forest had greater numbers of species and individuals, and higher diversity indices (H′). Teak plantation and secondary forest had substantially fewer individuals and species of pselaphine beetles. Species composition differed between primary and degraded forests. Canopy cover, soil moisture, and leaf litter mass positively correlated with beetle species richness and abundance. Leaf litter mass and soil moisture were the two most important factors affecting the diversity of pselaphine beetle assemblages. Among the 114 morphospecies collected, 43 morphospecies were specific to two or three habitats and 64 morphospecies were found only in a single habitat. Thus pselaphine beetles appear to have rather narrow habitat requirements and their presence/absence was correlated with environmental differences. These traits make pselaphine beetles a suitable bioindicator taxon for assessing forest litter diversity and monitoring habitat change.     

The relationship between invertebrate assemblages and available food at forest and pasture sites in three southeastern Australian streams

1. Levels of ash-free dry matter (AFDM) and chlorophyll a in epilithon, benthic participate organic matter (BPOM), invertebrate assemblage composition, and biomass of functional feeding groups were compared in winter and summer at forest and pasture sites in three Victorian streams. 2. Chlorophyll a concentrations of epilithon were significantly higher at pasture than forest sites in winter but not in summer while BPOM was not significantly greater at forest sites in either season. Epilithic biomass as AFDM did not show consistent differences between land uses or seasons. 3. Total biomass of invertebrates did not differ between forest and pasture sites but the biomass of shredders was significantly higher, and that of grazers significantly lower, at forest than pasture sites. A site shaded with an artificial canopy behaved as a forest site for grazers but as a pasture site for shredders. 4. Cluster analyses of invertebrate assemblages grouped pasture sites with forest sites on the same stream at the same season, indicating that assemblage composition was less influenced by land-use differences than by between-stream and seasonal differences. 5. Biomass of functional feeding groups appeared to be a more sensitive indicator of invertebrate assemblage response to land-use alteration than either species diversity/ richness measures, or multivariate assemblage composition measures.     

Insect Colonisation of Fruiting Bodies of the Wood-decaying Fungus Fomitopsis pinicola at Different Distances from an Old-growth Forest

We studied the colonisation rate of insects inhabiting fruiting bodies of the wood-decaying fungus Fomitopsis pinicola both within and at different distances (up to 1610 m) from an old-growth forest reserve. The colonisation rate of most species was not affected by the distance from the reserve, and none of the species were affected by the size of local sources of fruiting bodies in the managed forest. We suggest that many insect species inhabiting fruiting bodies of wood-decaying fungi can colonise fruiting bodies at a high enough rate to persist in managed forests of Fennoscandia. However, the colonisation rates of the fungivorous beetle Cis quadridens and the predatory fly Medetera apicalis were negatively affected by distance from the reserve. Cis quadridens is rare in many managed forests, but often quite common at sites with high substrate densities. The rarity of this species may therefore be due to weak ability to colonize distant patches. The same may also be true for M. apicalis, but less is known about the biology of this species. Medetera apicalis was the most common insect predator in the old-growth forest, but it was rare at the largest distances from it in the managed forest. Therefore, it seems likely that the overall pressure from natural enemies significantly declined with distance from the reserve.     

Species richness of soil gamasid mites (Acari: Mesostigmata) in fire-damaged mountain sites

Gamasid mites are important regulators of soil food webs in forest ecosystems. Wildfire is a dominant disturbance factor in forest ecosystems. We assessed the impact of fire on the species composition of soil gamasid mites at mountain sites following fires of four different degrees of severity and at one control site (5 years post-fire). In total, 14 families, 28 genera, and 54 species or species complexes were found. The abundance and richness were poor in severely burned sites compared to the less damaged sites. The different species compositions, especially in the medium-burned site, require further ecological study to improve our understanding. The fire response and recovery processes of selected species are also discussed.     

Occurrence and impact of the root-rot biocontrol agent Phlebiopsis gigantea on soil fungal communities in Picea abies forests of northern Europe

The aim of this study was to assess belowground occurrence, persistence and possible impact of the biocontrol agent Phlebiopsis gigantea (Fr.) Jülich on soil fungi. Sampling of soil and roots of Picea abies (L.) H. Karst. was carried out at 12 P. gigantea-treated and five nontreated control sites representing 1- to 60-month-old clear-cuts and thinned forest sites in Finland and Latvia. The 454-sequencing of ITS rRNA from fine roots, humus and mineral soil resulted in 8626 high-quality fungal sequences. Phlebiopsis gigantea represented 1.3% of all fungal sequences and was found in 14 treated and nontreated sites and in all three substrates. In different substrates, the relative abundance of P. gigantea at stump treatment sites either did not differ significantly or was significantly lower than in nontreated controls. No significant correlation was found between the time elapsed since the tree harvesting and/or application of the biocontrol and abundance of P. gigantea in different substrates. In conclusion, the results demonstrate that P. gigantea occasionally occurs belowground in forest ecosystems but that stump treatment with the biocontrol agent has little or no impact on occurrence and persistence of P. gigantea belowground, and consequently no significant impact on soil fungi.     

Structure of microbial communities in red ferralitic soils of Varadero National Park (Matanzas,Cuba)

Comparative study of microbial communities in red ferralitic soil, as well as tree waste and phylloplane of woody plants, of Varadero National Park (Cuba) has been performed. It is shown that the total bacterial abundance and the length of the actinomycete mycelium in the studied soil samples (A horizon) are comparable to and the length of the viable fungal mycelium is lower than the analogous parameters recorded in forest soils of the temperate zone. It is noted that the viability of bacteria is close to that in forest soils of the temperate zone. The maximum concentration of soil biota is found in the A horizon of the studied soils, in contrast to forest biogeocenoses of the temperate zone, where soil biota is concentrated in the litter. It is shown for the first time that prokaryote communities are characterized by a significant presence of filterable forms of bacteria, the content of which increases in the series: soil (A horizon) → tree waste (dry leaves) → phylloplane (green leaves).     

Detection and Quantification of Plectosphaerella cucumerina, a Potential Biological Control Agent of Potato Cyst Nematodes, by Using Conventional PCR, Real-Time PCR, Selective Media, and Baiting

Potato cyst nematodes (PCN) are serious pests in commercial potato production, causing yield losses valued at approximately $300 million in the European Community. The nematophagous fungus Plectosphaerella cucumerina has demonstrated its potential as a biological control agent against PCN populations by reducing field populations by up to 60% in trials. The use of biological control agents in the field requires the development of specific techniques to monitor the release, population size, spread or decline, and pathogenicity against its host. A range of methods have therefore been developed to monitor P. cucumerina. A species-specific PCR primer set (PcCF1-PcCR1) was designed that was able to detect the presence of P. cucumerina in soil, root, and nematode samples. PCR was combined with a bait method to identify P. cucumerina from infected nematode eggs, confirming the parasitic ability of the fungus. A selective medium was adapted to isolate the fungus from root and soil samples and was used to quantify the fungus from field sites. A second P. cucumerina-specific primer set (PcRTF1-PcRTR1) and a Taqman probe (PcRTP1) were designed for real-time PCR quantification of the fungus and provided a very sensitive means of detecting the fungus from soil. PCR, bait, and culture methods were combined to investigate the presence and abundance of P. cucumerina from two field sites in the United Kingdom where PCN populations were naturally declining. All methods enabled differences in the activity of P. cucumerina to be detected, and the results demonstrated the importance of using a combination of methods to investigate population size and activity of fungi.     

Communities of ground-living spiders in six habitats on a mountain in Quebec, Canada

Ground-living spiders were studied, using pitfall traps, in six habitats between 580 and 960 m (deciduous forest, fir forest, forest-line and three alpine mountain top sites) on Mont du Lac des Cygnes. Altogether 88 species of spiders were found during the study summer (June-mid-September 1985), of which 51 belonged to Linyphiidae (s. lat.), 9 to Lycosidae and 8 to Gnaphosidae. The highest species number and diversity were found in the forest-line habitat, the highest individual number on the main summit and the lowest in deciduous forest, the lowest site. Lycosidae and Gnaphosidae species and individuals characterized the alpine habitats. Linyphiidae (especially Linyphiinae) the forested sites and Amaurobiidae and Agelenidae the deciduous forest site. Erigoninae occurred commonly at all sites; their individual numbers were very high at coniferous forest sites. The dominant species in all three alpine habitats was Pardosa concinna , on the forest-line Hybocoptus gibbosus , in balsam fir forest Sisicottus montanus and in deciduous forest Amaurobius borealis . The material included several (sub)arctic-alpine species.     

Habitat associations of imperilled fishes after conservation intervention in the Cape Fold Ecoregion,South Africa

The aim of this study was to examine the habitat associations of a native cyprinid community of the recovering Rondegat River in the Cape Fold Ecoregion of South Africa as part of a long-term native fish abundance monitoring project. Relative abundance data were extracted from underwater video camera footage across the longitudinal gradient of the river in three sampling instances. Using multivariate methods the authors assessed community composition with respect to habitat, its overlap with a protected area and species-specific abiotic predictors of relative abundance. Distance from the uppermost site in the river was the most significant predictor of species abundance, indicating spatial segregation and varying overlap between species. The protected status of sites in the upper reaches, vegetated substrates and the size of individual sites were the most impactful on the relative abundance of the endangered fiery redfin Pseudobarbus phlegethon. The results of this study indicate that underwater video monitoring is an effective and low-cost approach that can inform conservation recommendations. Reducing agricultural runoff and sedimentation in the lower reaches may be useful further interventions to maintain key habitats of submerged vegetation.