Description of Leptopharynx bromelicola n. sp. and characterization of the genus Leptopharynx Mermod, 1914 (Protista, Ciliophora)

Using morphological, morphometrical, and molecular methods, we describe Leptopharynx bromelicola n. sp. from tank bromeliads of Jamaica. We add significant data to Leptopharynx costatus and briefly characterize and review the genus Leptopharynx Mermod, 1914, including four new combinations. Nine species can be distinguished when applying the following main features and assuming that most or all have the ability to produce macrostomes (MAs): distinct ridges along the right side ciliary rows; special features like spines or wings on the body and of the oral basket; dikinetids present vs. absent from somatic kinety 3; number of kinetids in kinety 6 as two for the costatus pattern and ≥ five for the bromelicola pattern; beginning and structure of kinety 9 as either underneath or far underneath the adoral membranelles and with or without dikinetids; postoral complex present vs. absent; and preoral kinety 4 continuous vs. discontinuous. The 18S rDNA sequences of L. bromelicola and L. costatus differ by 1.7% and show that Leptopharynx forms a distinct clade within the Nassophorea Small & Lynn, 1981. Leptopharynx bromelicola is possibly closely related to Leptopharynx euglenivora Kahl, 1926, which, however, lacks the basket nose so typical of the former. Leptopharynx forms thin-walled, non-kinetosome-resorbing resting cysts maintaining most of the trophic organelles.     

Notes on Soil Ciliates (Protozoa, Ciliophora) from The Netherlands, with Description of Keronopsis schminkei nov. spec. and Apobryophyllum schmidingeri nov. spec

Fifty-six ciliate taxa, including three new species, were found in two soil samples from the Hoge Veluwe National Park in The Netherlands. A literature search showed that The Netherlands, Belgium and Denmark are terra incognita with respect to soil ciliates: only about 100 species have been recorded. Likely, a much greater number, including many undescribed species, can be found on more detailed investigations. Two of the three new species are described in detail. Keronopsis schminkei nov. spec. differs from the congeners by the nuclear apparatus and cirral pattern. Keronopsis wetzeli?Wenzel, 1953 is neotypified with the Austrian population described by Berger and Foissner (1987). Apobryophyllum schmidingeri differs from the congeners by body shape, the macronucleus pattern (many nodules), the arrangement of the extrusomes, and various morphometric features. Scanning electron micrographs and protargol preparations of Enchelys polynucleata confirm earlier transmission electron microscopic data on the occurrence of oralized somatic monokinetids and the lack of a circumoral kinety. Extrusome length and morphology of the resting cysts are rather different in various populations of E. polynucleata, indicating high genetic diversity (subspecies?).     

Description of two new marine pleurostomatid ciliates, Loxophyllum choii nov. spec. and L. shini nov. spec. (Ciliophora, Pleurostomatida) from China

The morphology and infraciliature of two pleurostomatid ciliates, Loxophyllum choii nov. spec. and L. shini nov. spec., collected from inshore waters and a shrimp-culturing pond near Qingdao (Tsingtao), China, were investigated using live observations and the protargol-impregnation method. L. choii is distinguished from its congeners by the presence of conspicuous warts and prominent spines along the dorsal margin. L. shini is identified by a combination of characters including the small body size, the presence of two macronuclear nodules and the evenly distributed extrusomes whose tips protrude from the surface along both margins.     

Morphological Description and Molecular Phylogeny of Two Species of Levicoleps (Ciliophora,Prostomatida), L. taehwae nov. spec. and L. biwae jejuensis nov. subspec., collected in Korea

Two colepid ciliates, Levicoleps taehwae nov. spec. and L. biwae jejuensis nov. subspec., were collected from the brackish water of the Taehwa River and a small freshwater pond in Jeju Island, South Korea, respectively. Their living morphology, infraciliature, and small subunit (SSU) rRNA gene sequences were determined using standard methods. Barrel‐shaped L. taehwae nov. spec. is a small ciliate with an average size of 45 × 25 μm in vivo, about 15 ciliary rows each composed of 12 monokinetids and two perioral dikinetids, and two 20 μm‐long caudal cilia. The sequence length and GC content of the SSU rRNA gene are 1,669 bp, 44.5%. This novel species is similar in body size to Coleps hirtus, and has six armor tiers and hirtus‐type tier plates, and the same number of ciliary rows as C. hirtus; however, it can be distinguished from the latter by the absence of armor spines and its sequence similarity of SSU rRNA gene is about 92.8% which indicates that it is a distinct form. Levicoleps biwae jejuensis nov. subspec., is a medium colepid ciliate which has a barrel‐shaped body, about 22 somatic kineties and 16 transverse ciliary rows, three mini adoral organelles, and four 15 μm‐long caudal cilia. The sequence length and GC content of the SSU rRNA gene are 1,666 bp and 44.4%.     

Two new marine pleurostomatid ciliates from China,Amphileptus gui nov. spec. and Amphileptus yuianus nov. spec. (Ciliophora,Pleurostomatida)

The morphology and infraciliature of two pleurostomatid ciliates, Amphileptus gui nov. spec. and A. yuianus nov. spec., collected from mariculture ponds near Qingdao (Tsingtao), China, were investigated using living observations and the protargol impregnation method. These new species are distinguished from their congeners by a combination of characters including their marine habitat and the presence of an apical group of densely packed extrusomes. Amphileptus gui nov. spec. differs from A. yuianus nov. spec. mainly in the number of contractile vacuoles (3–7 vs. 1), the shape of extrusomes (thin bar-like vs. clavate), and the number of left and right somatic kineties (7–11 and 37–50 vs. 4 and 18–22).     

Morphology and Phylogeny of Three Trachelocercid Ciliates,with Description of a New Species,Trachelocerca orientalis spec. nov. (Ciliophora,Karyorelictea)

Three trachelocercid ciliates, Trachelocerca orientalis spec. nov., Prototrachelocerca fasciolata (Sauerbrey, 1928) Foissner, 1996 and Tracheloraphis huangi Xu et al., 2011, isolated from marine coastal habitats at Qingdao, China, were taxonomically studied using observation in vivo and silver staining methods. The new species T. orientalis spec. nov. can be recognized by the combination of its size (600–1,200 μm in vivo), 15–21 somatic kineties and about 13 groups of macronuclear nodules forming a strand and the colorless globular cortical granules. Together with the sequence data of the small subunit ribosomal RNA (SSU rRNA) gene, the information of a new isolate of P. fasciolata and three populations of T. huangi is also documented based on the present work. According to the molecular data, the phylogeny of three species is estimated and the analyses show that they are all found within the trachelocercid assemblage though T. huangi does not cluster with its congeners but with Trachelocerca species. Nonetheless, the monophyly of Trachelocerca is not rejected by the approximately unbiased test (p = 0.345 > 0.05), while that of Tracheloraphis is not confirmed (p = 0.0002 < 0.05).     

Morphology and molecular phylogeny of two new soil ciliates,Hemiurosomoida warreni nov. spec. and Hemiurosoma clampi nov. spec. (Ciliophora,Hypotrichia) from Tibet

Two novel hypotrichous ciliates, Hemiurosomoida warreni nov. spec. and Hemiurosoma clampi nov. spec., isolated from soil in the Lhalu Wetland and Motuo Virgin Forest in Tibet, respectively, were investigated using live observation and protargol staining. Hemiurosomoida warreni nov. spec. strongly resembles the type species H. longa but can be distinguished by its body size in vivo (110–145 × 30–40 μm vs. 50–100 × 18–40 μm), number of adoral membranelles (25–38 vs. 15–22), and numbers of right (29–39 vs. 14–23) and left (26–35 vs. 13–23) marginal cirri, transverse cirri (3 vs. 4 or 5) and macronuclear nodules (4–8 vs. 2). Hemiurosoma clampi nov. spec. is characterized by its vermiform body shape, colourless cortical granules distributed in irregular rows, two macronuclear nodules, three frontal cirri, one buccal cirrus, four frontoventral cirri ranged in a line, two transverse cirri, lacking postoral ventral and pretransverse ventral cirri, and marginal rows that are not posteriorly confluent. Phylogenetic analyses based on SSU rDNA gene sequences suggest that Hemiurosomoida is not monophyletic. A close relationship is revealed between Hemiurosomoida warreni nov. spec., Parakahilella macrostoma, Hemiurosoma clampi nov. spec., and the type species Hemiurosoma terricola. As expected, all these species are classified within the “non-oxytrichid Dorsomarginalia”.     

Taxonomic studies on three marine pleurostomatid ciliates, Litonotus bergeri nov. spec., L. blattereri nov. spec. and L. petzi nov. spec. (Ciliophora, Pleurostomatida) from North China Sea

The morphology and infraciliature of three pleurostomatid ciliates, Litonotus bergeri nov. spec., L. blattereri nov. spec. and L. petzi nov. spec., collected from mariculture ponds near Qingdao (Tsingtao), China, were investigated using live observations and the protargol impregnation method. These new species are distinguished from their congeners by a combination of characters including the typical distribution of extrusomes, i.e., along entire ventral margin, the number of macronuclear nodules, features and number of somatic kineties, living morphology, number and position of contractile vacuoles and their marine biotopes. Considering the distribution of extrusomes and general morphology, five new combinations are suggested, Litonotus vermiforme (Sauerbrey, 1928) nov. comb. [basionym: Loxophyllum vermiforme Sauerbrey, 1928], Litonotus levigatum (Sauerbrey, 1928) nov. comb. [basionym: Loxophyllum levigatum Sauerbrey, 1928], Litonotus undulatum (Sauerbrey, 1928) nov. comb. [basionym: Loxophyllum undulatum Sauerbrey, 1928], Loxophyllum pictus (Gruber, 1884) nov. comb. [basionym: Litonotus pictus Gruber, 1884] and Loxophyllum trichocystiferus (Foissner, 1984) nov. comb. [basionym: Litonotus trichocystiferus Foissner, 1984].     

Amphileptus aeschtae nov. spec. and Amphileptus eigneri nov. spec. (Ciliophora, Pleurostomatida), two new marine pleurostomatid ciliates from China

The morphology and infraciliature of two pleurostomatid ciliates, Amphileptus aeschtae nov. spec. and Amphileptus eigneri nov. spec., collected from shrimp-culturing ponds of the Bohai Sea, China, were investigated using live observations and the protargol impregnation method. The new species A. aeschtae is identified by the presence of 200-300 macronuclear nodules and several contractile vacuoles along the ventral side of the cell. A. eigneri differs from its congeners, inter alia, by the marine habitat, the presence of many contractile vacuoles along the ventral margin and the number of somatic kineties on both sides. Loxophyllum ozakii Shigematsu, 1953 is transferred to Kentrophyllum.     

Two vicariant Semispathidium species from tropical Africa and central Europe: S. fraterculum nov. spec. and S. pulchrum nov. spec. (Ciliophora,Haptorida)

Using standard methods, we describe two new Semispathidium species from semiterrestrial habitats of tropical Africa and central Europe. Semispathidium fraterculum nov. spec. and S. pulchrum nov. spec. differ from each other and from two Namibian (Southwest African) congeners by body size, the shape and location of the extrusomes; the shape of the macronucleus, the number of ciliary rows, the number of cilia within the rows, and the number of dikinetids comprising the dorsal brush rows. The globular resting cyst of S. fraterculum is unique in having countless granules on the inside of the external layer, forming sharp-angled rows. The distribution of these and two further, not yet described south African species indicates that the genus Semispathidium evolved in subtropical Africa. Semispathidium fraterculum and S. pulchrum are highly similar, both morphologically and ecologically, differing in mainly one important feature: the shape and location of the extrusomes used for prey capture. This suggests that they evolved from a common ancestor whose areal was divided by a vicariant event, causing an independent evolution of the split populations. We argue that this and other species pairs indicate that the vicariance speciation model is applicable to protists.     

Morphology and Ontogenesis of Psilotrichides hawaiiensis nov. gen., nov. spec. and Molecular Phylogeny of the Psilotrichidae (Ciliophora,Hypotrichia)

The Psilotrichidae are a family of middle‐sized hypotrichs with unique morphological and ontogenetic features (e.g. the oral primordium develops in a deep pouch) that, however, did not provide a definite phylogenetic signal. Thus, we studied the 18S rRNA gene of Urospinula succisa (Müller 1786) Esteban et al., 2001 as well as the morphology and ontogenesis of Psilotrichides hawaiiensis, a new genus and species from an ephemeral swamp on Oahu Island, Hawaii. The molecular data classify the psilotrichids into the oxytrichids but without clear branching position. A brief revision, using the structure of the oral apparatus, the location of the contractile vacuole, and three ontogenetic features, showed four distinct genera: Psilotricha Stein, 1859; Urospinula Corliss, 1960; Hemiholosticha Gelei, 1954; and Psilotrichides nov. gen., which differs from the confamilials mainly by the obliquely oriented buccal cavity and the shape of the undulating membranes as well as by a distinct ridge along the right buccal margin. The pyriform species, P. hawaiiensis, is about 65 × 45 μm in size and is easily recognized by the table tennis racket‐shaped appearance due to the elongated last cirrus of the left marginal row. Refined diagnoses are provided for the family Psilotrichidae Bütschli, 1889 and the genera contained.     

Morphology and morphogenesis of Holosticha heterofoissneri nov. spec. from the Yellow Sea,China (Ciliophora,Hypotrichida)

The morphology and morphogenesis of the marine hypotrichous ciliate Holosticha heterofoissneri nov. spec. from mollusc culture in Qingdao, China are described based on living and protargol-impregnated specimens. The new species is characterized by: adoral zone slightly bipartite, consisting of on average 43 membranelles; constantly 5 dorsal kineties, and 12 pairs of cirri in midventral rows, and 14–16 macronuclear segments, which differs from the closely related species, H. foissneri. Its morphogenetic process shows the following features: (1) the parental AZM is retained unchanged and will be inherited by the proter, only the old UM reorganized; (2) FVT-cirral anlagen in both division parts derive from the breaking of primary primordia; (3) during the formation of FVT-cirral anlagen, most midventral cirri remain intact; and there appears an 'extra' anlage (EA) between the UMA and other FVT-cirral primordia; (4) the generation type of the dorsal kineties is of 'one group mode', the leftmost one of the 4 primordia fragmentates to form a new kinety; (5) at the early stage of morphogenesis, replication bands of macronuclear segments are apparently present.     

Morphology and infraciliature of Holosticha bradburyae nov. spec. (Ciliophora,Hypotrichida) from the Yellow Sea,China

The living morphology and infraciliature of a new marine hypotrichous ciliate, Holosticha bradburyae nov. spec., collected from the coastal water off Qingdao (Tsingtao), China, are investigated. This species is characterized by: body size 150–320 × 25–75 m with brownish to dark brown cell colour, ca. 53 adoral membranelles and 1 anteriorly positioned buccal cirrus; 3 frontal, 2 frontoterminal and 20–26 transverse cirri; midventral rows comprising 27-32 pairs of cirri; one conspicuous gap always present between anterior and posterior parts of AZM, and 2–5 distinctly elongated membranelles are always present at the posteriormost end; cortical granules conspicuous, round and flattened with central depression, arranged in about 10 lines on dorsal side; 28–33 irregularly arranged macronuclear nodules; 9–11 complete dorsal kineties; caudal cirri absent.     

A new soil hypotrich ciliate (Protozoa, Ciliophora) from Slovakia: Gonostomum albicarpathicum nov. spec

The morphology and infraciliature of the soil hypotrich ciliate, Gonostomum albicarpathicum nov. spec., collected from Biele Karpaty (White Carpathian Mts.), Slovakia, were investigated using living observations and the protargol impregnation method. This new species is distinguished from its congeners by a combination of characters including arrangement of macronuclear nodules forming a pair of nodules each ahead of and behind mid-body; 6-10 frontoventral cirri and 3 frontoterminal cirri forming a short row; first frontoterminal cirrus separated from the second by a slightly greater distance than between second and third.     

Characterization of Euplotes lynni nov. spec., E. indica nov. spec. and description of E. aediculatus and E. woodruffi (Ciliophora,Euplotidae) using an integrative approach

Four species belonging to the genus Euplotes have been investigated, namely: E. lynni nov. spec., E. indica nov. spec., E. aediculatus, and E. woodruffi. All populations are from India and were investigated using morphological and molecular markers. The phylogenetic relationships were inferred from small subunit ribosomal rRNA gene (SSU rRNA), internal transcribed spacer (ITS) region, and mitochondrial cytochrome c oxidase subunit I (COI) gene. Predicted secondary structure models for two new species using the hypervariable region of the SSU rRNA gene and ITS2 region support the distinctness of both species. Morphological characters were subjected to principal component analysis (PCA) and genetic variations were studied in-depth to analyze the relatedness of the two new species with their congeners. An integrative approach combining morphological features, molecular analysis, and ecological characteristics was carried out to understand the phylogenetic position of the reported species within the different clades of the genus Euplotes.     

Morphological and molecular characterization of Aspidisca hongkongensis spec. nov. (Ciliophora,Euplotida) from the South China Sea

The morphology and infraciliature of a new ciliate, Aspidisca hongkongensis spec. nov., a large marine form isolated from the coastal waters near Hong Kong, were investigated. It differs from the congeners by the combination of cell size (about 90×60 μm in vivo), 9–11 conspicuous dorsal ridges, one fine and seven strong frontoventral cirri, six membranelles in anterior portion of adoral zone, and 17–23 membranelles in posterior portion of adoral zone. The comparison with similar congeners clearly supports the distinction of this new species based on morphological and small subunit (SSU) rRNA gene sequence studies. The SSU rRNA gene sequence similarity within the genus is about 75.3–92.1% which indicates that this is a distinct form. Phylogenetic trees based on SSU rRNA gene information show that A. hongkongensis groups with A. leptaspis.     

Schmidingerothrix salinarum nov. spec. is the Molecular Sister of the Large Oxytrichid Clade (Ciliophora,Hypotricha)

In 2012, Foissner described a curious hypotrich: Schmidingerothrix extraordinaria. This ciliate, which he discovered in hypersaline soils (~100‰) from Namibia, had a frayed buccal lip, three‐rowed adoral membranelles, only one frontal cirrus, and a miniaturized first frontal membranelle, while a paroral membrane, dorsal bristle rows and buccal, transverse and caudal cirri were absent. All opisthe structures developed de novo, while parental structures were involved in the proter. When Foissner's study became available, we discovered a similar species in a Portuguese solar saltern, differing from S. extraordinaria mainly by the number of frontoventral cirral rows (3 vs. 1). Furthermore, parental structures were involved in the ontogenesis of both proter and opisthe. The small subunit (SSU) rDNA shows Schmidingerothrix as sister of a large clade containing most classical oxytrichids (e.g. Sterkiella, Oxytricha, Steinia) and many related taxa (e.g. Pattersoniella, Bistichella, Uroleptus). This clade shows a bifurcation named “Oxytricha subclade” and “Uroleptus subclade”. Foissner ( 2012 ) interpreted the peculiarities of Schmidingerothrix as a reduction caused by the extreme habitat. However, the molecular data do not exclude that Schmidingerothrix presents an ancient state. A morphology‐based scheme is presented, showing how the subclades might have evolved from a Schmidingerothrix‐like ancestor.