The influence of habitat homogenization on the trophic structure of fish fauna in tropical streams

Habitat homogenization is one of the most important drivers of change in riverine fauna. Therefore, the aim of this study was to determine whether habitat homogenization influences the trophic structure of fish assemblages in tropical streams. We sampled 78 streams located in pasture and crop lands to examine habitat variables and fish. Principal coordinates analysis, canonical analysis of principal coordinates, and a distance-based test for homogeneity of multivariate dispersions revealed two groups of streams, designated homogeneous and heterogeneous, based on the habitat variables. We determined trophic guilds according to the frequency and biovolume of food items. Seven guilds were identified: aquatic insectivores, terrestrial insectivores, detritivores, herbivores, omnivores, algivores, and detritivores–algivores. Homogeneous streams showed higher abundance and biomass of aquatic insectivores, detritivores, and algivores. Heterogeneous streams showed greater diversity of trophic guilds and higher abundance and biomass of terrestrial insectivores and herbivores than homogeneous streams. Our results demonstrate that trophic structure is influenced by habitat condition. Additionally, the riparian canopy and nearshore vegetation have a modulating role in the trophic structure of stream fishes due to their influence on resource supply and promotion of the physical heterogeneity of the channel.     

Trophic Structure of One Deep-sea Benthic Fish Community in the Eastern Canadian Arctic: Application of Food, Parasites and Multivariate Analysis

Synopsis As new arctic marine fisheries develop there is need for a comprehensive ecosystem approach to long-term management. This approach recognizes the importance of community interactions such as food web structure and trophic patterns. We determined whether hierarchical clustering (guild formation) is an effective method of trophic evaluation in deep-sea Artic fish communities using stomach content and parasite data with size class, and evaluated the application of endohelminth communities (parasite species transmitted in the food) as indicators of trophic status. Cluster analysis using food group abundance with size class of fish revealed the presence of 11 guilds within the community, however the same analysis using parasite data showed little correlation between food and parasites. Redundancy analysis (RDA) within the 11 guilds also revealed no significant correlations between food group and parasite abundance suggesting that this type of ordination is not suited for environments containing mainly generalist feeders. RDA of individual taxa without a priori guild designation found that taxa in benthic deep-sea communities are defined by their ability to exploit prey species in more than one habitat zone. Benthic fish species were significantly correlated with benthic food groups and parasites that utilize benthic intermediate hosts whereas benthopelagic–pelagic species fed on a higher diversity of prey species and were infected by a larger number of non-host specific parasites. Eigenanalysis and Monte Carlo results showed that parasites and food groups are highly correlated, indicating that parasite community analysis is an effective tool for predicting feeding strategies in Arctic marine environments. It also suggests that in most cases endoparasite infections alone could be used for trophic evaluation in the absence of stomach content data.     

Effect of siltation on stream fish communities

Synopsis The effect of siltation on stream fish in northeast Missouri was evaluated using community structural measurements and a functional approach that emphasized feeding and reproductive guilds. As the percentage of fine substrate increased, the distinction among riffle, run, and pool communities decreased, primarily because the number of individuals of typical riffle species decreased. Within the riffle communities the abundance of fish of two feeding guilds — benthic insectivores and herbivores — was reduced as the percent of fine substrate increased. The abundance of fish in other feeding guilds was not affected. The only reproductive guild to be similarly affected was the simple and lithophilous, whose members require a clean gravel substrate for spawning. Species within each guild affected by siltation had significantly similar trends in abundance. The guild analysis indicated that species with similar ecological requirements had a common response to habitat degradation by siltation.     

Indirect effects of the algivorous fish Plecoglossus altivelis altivelis on the growth of two insectivorous benthic fish

1. Animals exploiting different resources may nevertheless interact if one species indirectly alters the abundance and distribution of the food of the other. To analyse this indirect effect, we conducted experiments in artificial pools and in the field to investigate the influence of the algivorous fish Plecoglossus altivelis altivelis (known as the ayu) on two species of insectivorous benthic fish, Pseudogobio esocinus esocinus and the goby Gymnogobius petschiliensis .
2. In the pool experiments, algal biomass was not correlated with the number of ayu, but the percentage of blue-green bacteria rose as the number increased. The number of aquatic macroinvertebrates on the upper surface of ceramic tiles placed in the pool bed decreased as the number of ayu increased.
3. Although ayu and the benthic species did not interact directly, the reduction in invertebrate abundance on the upper surface of tiles in the pool reduced the growth rate of the benthic insectivores.
4. In field experiments, the introduction of ayu into habitats with P. esocinus esocinus or G. petschiliensis reduced the growth rate of these benthic fish. In the field experiment that was carried out over 5 years in the G. petschiliensis habitat, the population density of the goby decreased when ayu were stocked.
5. The ayu is a strong interactor or bioengineer in streams, affecting not only benthic algae but also aquatic invertebrates and fishes. We conclude that to predict the outcome of interspecific interactions amongst fishes in streams with high algal production, possible indirect effects must be considered alongside better known direct effects.     

Fish predation regimes modify benthic diatom community structures: Experimental evidence from an in situ mesocosm study

Diatoms are important primary producers in shallow water environments. Few studies have assessed the importance of biological interactions in structuring these communities. In the present study, benthic diatom community structure in relation to manipulated food webs was assessed using in situ mesocosms, whereby predator‐free environments and environments comprising two different fish species were assessed. Zooplankton abundance, settled algal biomass and the diatom community were monitored over a 12‐day period across each of the three trophic scenarios. Differences among treatments over time were observed in zooplankton abundances, particularly copepods. Similarly, the benthic diatom community structure changed significantly over time across the three trophic treatments. However, no differences in total algal biomass were found among treatments. This was likely the result of non‐diatom phytoplankton contributions. We propose that the benthic diatom community structure within the mesocosms was influenced by trophic cascades and potentially through direct consumption by the fish. The study highlights that not only are organisms at the base of the food web affected by predators at the top of the food web, but that predator identity is potentially an important consideration for predator–prey interaction outcomes with consequences for multiple trophic levels.     

Genetic variation and phenotypic plasticity in a trophically polymorphic population of pumpkinseed sunfish (Lepomis gibbosus)

Summary Adaptive variation can exist at a variety of scales in biological systems, including among species, among local populations of a single species and among individuals within a single population. Trophic or resource polymorphisms in fishes are a good example of the lowest level of this hierarchy. In lakes without bluegill sunfish (Lepomis macrochirus), pumpkinseed sunfish (Lepomis gibbosus) can be trophically polymorphic, including a planktivorous limnetic form found in the pelagic habitat, in addition to the usual benthic form found in the littoral zone. In this paper we examine the degree to which morphological differences between the two forms are caused by genetic differences versus phenotypic plasticity. Adults from pelagic and littoral sites in Paradox Lake, NY, were bred separately and their progeny were raised in cages both in the open water and shallow water habitats of an artificial pond. The experimental design permitted two tests of genetic differences between the breeding stocks (in open and shallow water cages, respectively) and two tests of phenotypic plasticity (in the limnetic and benthic offspring, respectively). Limnetic progeny were more fusiform than benthic progeny raised in the same habitat. In addition, progeny of both stocks displayed limnetic-type characteristics when raised in the open water and benthic-type characteristics in the shallow water. Thus, genetic differences and phenotypic plasticity both contributed to the trophic polymorphism. Phenotypic plasticity and genetic differentiation accounted for 53 and 14%, respectively, of the variation in morphology. This study addresses the nature of subtle phenotypic differences among individuals from a single population that is embedded within a complex community, a condition that is likely to be the norm for most natural populations, as opposed to very large differences that have evolved in relatively few populations that reside in species-poor environments.     

Habitat specialization in tropical continental shelf demersal fish assemblages

The implications of shallow water impacts such as fishing and climate change on fish assemblages are generally considered in isolation from the distribution and abundance of these fish assemblages in adjacent deeper waters. We investigate the abundance and length of demersal fish assemblages across a section of tropical continental shelf at Ningaloo Reef, Western Australia, to identify fish and fish habitat relationships across steep gradients in depth and in different benthic habitat types. The assemblage composition of demersal fish were assessed from baited remote underwater stereo-video samples (n = 304) collected from 16 depth and habitat combinations. Samples were collected across a depth range poorly represented in the literature from the fringing reef lagoon (1-10 m depth), down the fore reef slope to the reef base (10-30 m depth) then across the adjacent continental shelf (30-110 m depth). Multivariate analyses showed that there were distinctive fish assemblages and different sized fish were associated with each habitat/depth category. Species richness, MaxN and diversity declined with depth, while average length and trophic level increased. The assemblage structure, diversity, size and trophic structure of demersal fishes changes from shallow inshore habitats to deeper water habitats. More habitat specialists (unique species per habitat/depth category) were associated with the reef slope and reef base than other habitats, but offshore sponge-dominated habitats and inshore coral-dominated reef also supported unique species. This suggests that marine protected areas in shallow coral-dominated reef habitats may not adequately protect those species whose depth distribution extends beyond shallow habitats, or other significant elements of demersal fish biodiversity. The ontogenetic habitat partitioning which is characteristic of many species, suggests that to maintain entire species life histories it is necessary to protect corridors of connected habitats through which fish can migrate.     

Bird richness and composition along an agricultural gradient in New Guinea: The influence of land use,habitat heterogeneity and proximity to intact forest

Abstract We examined variation in bird species richness, abundance and guild composition along an agricultural gradient in New Guinea, and looked for any additive influence of habitat heterogeneity on these variables. The study was based on a grid of survey plots, six plots wide and 24 plots long with the long axis running from a settlement 2.4 km through active and abandoned agricultural plots towards a large area of forest. Each circular survey plot (25 m radius) was assigned to a broad habitat type, ten habitat measures taken, and birds counted for 1 h in each plot. Principal component analysis (PCA) habitat axis 1 described an axis of decreasing forest alteration (larger trees, greater tree densities, fuller canopy) that was positively correlated with distance from the settlement. Bird richness and abundance were highest at intermediate disturbance levels (plots with mid‐range axis 1 scores). Proportions of insectivores and frugivores increased with decreasing forest alteration, while proportions of nectarivores decreased. We calculated three measures of habitat heterogeneity by comparing each plot's PCA score to those of eight neighbouring plots (50–110 m away). These measures reflected how different the plot was to its neighbours, how variable the habitat was around the plot, and the degree to which the plot bordered less disturbed forest. We related these measures to plot bird variable scores independently, and to residuals following regressions of bird scores against PCA scores. Heterogeneity measures had no significant influence on abundance or richness measures, but there were greater proportions of frugivores in plots showing a given degree of habitat alteration if they bordered more pristine habitat. While we readily identified differences in bird communities along the agricultural gradient, the influences of habitat heterogeneity were not striking for birds at this fine scale.     

Diet and Habitat use by Bluefish, Pomatomus Saltatrix, in a Chesapeake Bay Estuary

Bluefish, Pomatomus saltatrix, are recreationally valuable finfish along the Atlantic seaboard and in the Chesapeake Bay. Diet and habitat use patterns for bluefish life history intervals in Chesapeake Bay estuaries are poorly described although it is widely acknowledged that this apex piscivorous species relies on estuarine habitat for feeding and nursery grounds after oceanic spawning and inshore migration of larvae. Bluefish diet, distribution, and abundance patterns were examined in relation to oyster reef, oyster bar, and sand bottom habitat in the Piankatank River, Virginia. Bluefish from all sites were predominantly piscivorous and were more abundant at reef sites than non-reef sites. Bluefish caught in association with the oyster reef consumed a wider diversity of prey items than fish from other sites; diet diversity may contribute to bluefish success during periods when small pelagic food fish abundance is reduced. Bluefish estuarine habitat use is positively correlated with the presence of oyster shell habitat and the complex trophic communities centering on oyster reefs.     

Benthic communities along a littoral of the Central Adriatic Sea (Italy)

Bacteria, meio- and macrofauna were investigated at different depths in a coastal area of the Central Adriatic Sea, yielding information about the composition and abundance of the benthic community. In particular, 14 nematode genera were recorded for the first time in the Upper Adriatic Sea. All communities resulted as being significantly different between inshore and offshore stations, especially when the season interaction was considered. Sediment grain size seemed to be the main natural variable, along with trophic resources, affecting the distribution and composition of these benthic components, whilst there was no clear evidence of competition for food sources and predatory pressure between the communities. Meiofauna appeared the most useful community for detecting disturbances and river influences. In particular, the lowest copepod abundance in the shallow waters seemed to be related to a greater anthropogenic disturbance inshore, whilst meiofaunal abundance and diversity together with the nematode maturity index suggest the influence of the Foglia and Metauro rivers and the small stream Arzilla.     

An assessment of the sources of error in estimations of bulk sedimentary pigment concentrations and its implications for trophic status assessment

Rates of leaf litter processing and densities of macroinvertebrates in leaf packs were compared at two sites that differed in catchment logging history. The processing rate of leaves of sugar maple (Acer saccharum Marsh.) was significantly faster in a stream draining a catchment that had been logged about 20 years ago than in one that had been undisturbed for 80 years. The faster processing rate was accompanied by significantly higher leaf pack densities of total macroinvertebrates, shredders, and collector-gatherers. The higher densities of leaf pack macroinvertebrates were apparently a result of differences in tree species between the two catchments. These differences resulted in greater inputs of fast-decomposing leaf litter to the stream draining the disturbed catchment and in smaller amounts of leaf litter remaining in the stream draining the disturbed catchment by spring when this study was conducted. The Unit is jointly sponsored by the West Virginia Department of Natural Resources, West Virginia University, the U.S. Fish and Wildlife Service, and the Wildlife Management Institute. The Unit is jointly sponsored by the West Virginia Department of Natural Resources, West Virginia University, the U.S. Fish and Wildlife Service, and the Wildlife Management Institute.     

Spatiotemporal variability of stream habitat and movement of three species of fish

Relationships between environmental variability and movement are poorly understood, due to both their complexity and the limited ecological scope of most movement studies. We studied movements of fantail (Etheostoma flabellare), riverweed (E. podostemone), and Roanoke darters (Percina roanoka) through two stream systems during two summers. We then related movement to variability in measured habitat attributes using logistic regression and exploratory data plots. We indexed habitat conditions at both microhabitat (i.e., patches of uniform depth, velocity, and substrate) and mesohabitat (i.e., riffle and pool channel units) spatial scales, and determined how local habitat conditions were affected by landscape spatial (i.e., longitudinal position, land use) and temporal contexts. Most spatial variability in habitat conditions and fish movement was unexplained by a site’s location on the landscape. Exceptions were microhabitat diversity, which was greater in the less-disturbed watershed, and riffle isolation and predator density in pools, which were greater at more-downstream sites. Habitat conditions and movement also exhibited only minor temporal variability, but the relative influences of habitat attributes on movement were quite variable over time. During the first year, movements of fantail and riverweed darters were triggered predominantly by loss of shallow microhabitats; whereas, during the second year, microhabitat diversity was more strongly related (though in opposite directions) to movement of these two species. Roanoke darters did not move in response to microhabitat-scale variables, presumably because of the species’ preference for deeper microhabitats that changed little over time. Conversely, movement of all species appeared to be constrained by riffle isolation and predator density in pools, two mesohabitat-scale attributes. Relationships between environmental variability and movement depended on both the spatiotemporal scale of consideration and the ecology of the species. Future studies that integrate across scales, taxa, and life-histories are likely to provide greater insight into movement ecology than will traditional, single-season, single-species approaches. The Virginia Cooperative Fish and Wildlife Research Unit is jointly sponsored by the US Geological Survey, Virginia Polytechnic Institute and State University, Virginia Department of Game and Inland Fisheries, and Wildlife Management Institute.     

Restoring Lepidopteran Communities to Oak Savannas: Contrasting Influences of Habitat Quantity and Quality

Ecological restoration is deemed important for the long‐term conservation of biodiversity, but ecologists still lack an understanding of how habitat availability and habitat quality in a restored system interact to determine species diversity. This problem seems particularly apparent in Tallgrass Prairie and savanna ecoregions, where restored management units represent the majority of extant habitat. In this study, we tested three principal hypotheses, each stating that the diversity of Lepidoptera would be greater in (1) patches of savanna habitat that were larger; (2) patches that were of higher habitat quality; and (3) patches that had greater connectivity to management units of similar physiognomy. Lepidoptera were sampled in 2003 from 13 unmanaged woodland remnants within Neal Smith National Wildlife Refuge, a 2,292‐ha prairie and savanna reconstruction project. We also measured 11 environmental variables within each site to assess variation in habitat quantity and quality. Principal components analysis (PCA) was used to identify major gradients of environmental variation among the 13 sites. Our PCA differentiated among woodlands along three environmental gradients, defined by (1) stand size, shape, topography, and oak dominance; (2) degree of disturbance; and (3) isolation. Total lepidopteran species richness, however, was only predicted by variation in the first principal component. Species richness of Lepidoptera known to be oak specialists was significantly affected by variation along all three PCA gradients. Surprisingly, more isolated woodland remnants contained a greater richness of oak feeders. Our results suggest that approaches to restoring oak savannas should emphasize aspects of both habitat quantity and quality. Beyond making individual management units larger, priority sites for restoration should possess a low importance of trees that are indicative of past habitat disturbance (e.g., Honey locust, White mulberry) even if canopy closure is substantial. Connectivity among restored habitats may benefit savanna moth communities only when habitat linkages contain a flora similar in composition to focal patches.     

Intra- and interspecific variation in trophic ecology of ‘predatory’ ants in the subfamily Ponerinae

1. The characterisation of energy flow through communities is a primary goal of ecology. Furthermore, predator–prey interactions can influence both species abundance and community composition. The ant subfamily Ponerinae includes many predatory species that range from generalist insectivores to highly specialised hunters that target a single prey type. Given their high diversity and ubiquity in tropical ecosystems, measuring intra- and interspecific variation in their trophic ecology is essential for understanding the role of ants as predators of insect communities. 2. The stable isotopic composition of nitrogen of 22 species from the ant subfamily Ponerinae was measured, relative to plants and other predatory and herbivorous insects at two Atlantic Forest sites in Argentina. The study tested the general assumption that ponerine ants are all predatory, and examined intra- and interspecific variation in trophic ecology relative to habitat, body size and cytochrome c oxidase subunit 1 sequences (DNA barcoding). 3. Stable isotope analysis revealed that most ponerines occupy high trophic levels (primary and secondary predators), but some species overlapped with known insect herbivores. Species residing at low trophic levels were primarily arboreal and may rely heavily on nectar or other plant-based resources in their diet. In addition, larger species tend to occupy lower trophic positions than smaller species. 4. Although some of the species were divided into two or more genetic clusters by DNA barcoding analysis, these clusters did not correspond to intraspecific variation in trophic position; therefore, colony dietary flexibility most probably explains species that inhabit more than one trophic level.     

Aquatic macroinvertebrate assemblages in mitigated and natural wetlands

Many wetlands have been constructed in West Virginia as mitigation for a variety of human disturbances, but no comprehensive evaluation on their success has been conducted. Macroinvertebrates are extremely valuable components of functioning wetland ecosystems. As such, benthic and water column invertebrate communities were chosen as surrogates for wetland function in the evaluation of 11 mitigation and 4 reference wetlands in West Virginia. Mitigation wetlands ranged in age from 4 to 21 years old. Overall familial richness, diversity, density and biomass were similar between mitigation and reference wetlands (p > 0.05). Within open water habitats, total benthic invertebrate density was higher in reference wetlands, but mass of common taxa from water column samples was higher in mitigation wetlands (p < 0.05) Planorbidae density from benthic samples in emergent habitats was higher in reference than mitigated wetlands. Benthic Oligochaeta density was higher across open water habitats in mitigation wetlands. All other benthic taxa were similar between wetland types. Among the most common water column orders, Isopoda density was higher in reference wetlands, but Physidae density was higher in mitigation wetlands. Within mitigation wetlands, emergent areas contained higher richness and diversity than open areas. These data indicate that mitigation and reference wetlands generally support similar invertebrate assemblages, especially among benthic populations. The few observed differences are likely attributable to differences in vegetative community composition and structure. Mitigation wetlands currently support abundant and productive invertebrate communities, and as such, provide quality habitat for wetland dependent wildlife species, especially waterbirds and anurans.     

Compound‐specific isotope analysis of benthic foraminifer amino acids suggests microhabitat variability in rocky‐shore environments

The abundance and biomass of benthic foraminifera are high in intertidal rocky‐shore habitats. However, the availability of food to support their high biomass has been poorly studied in these habitats compared to those at seafloor covered by sediments. Previous field and laboratory observations have suggested that there is diversity in the food preferences and modes of life among rocky‐shore benthic foraminifera. In this study, we used the stable nitrogen isotopic composition of amino acids to estimate the trophic position, trophic niche, and feeding strategy of individual foraminifera species. We also characterized the configuration and structure of the endobiotic microalgae in foraminifera using transmission electron microscopy, and we identified the origin of endobionts based on nucleotide sequences. Our results demonstrated a large variation in the trophic positions of different foraminifera from the same habitat, a reflection of endobiotic features and the different modes of life and food preferences of the foraminifera. Foraminifera did not rely solely on exogenous food sources. Some species effectively used organic matter derived from endobionts in the cell cytoplasm. The high biomass and species density of benthic foraminifera found in intertidal rocky‐shore habitats are thus probably maintained by the use of multiple nitrogen resources and by microhabitat segregation among species as a consequence.     

Macroinvertebrate assemblages at mesohabitat scale in small sized volcanic siliceous streams of Central Italy (Mediterranean Ecoregion)

According to the guidelines of the European Water Framework Directive, assessment of the ecological quality of streams and rivers should be based on type-specific reference conditions. Moreover to support biological indicators an hydromorphological analysis is also requested for each river type. The rationale for including an habitat assessment in biomonitoring study is that a biological community can be influenced by habitat quality just as water chemistry.In the present work benthic macroinvertebrates were analysed in a specific river type of Central Italy (small-sized streams, volcanic-siliceous), to identify taxa assemblages at the mesohabitat scale and to test how common measures of benthic community used in biomonitoring differ between riffles and pools in order to evaluate if differences may influence water quality classification.Macroinvertebrates were collected in 10 selected streams, covering the whole quality range present in the geographic area from ‘reference sites’ to human-impacted sites, along a pool–riffle sequence following a multihabitat sampling protocol.We compared assemblage of macroinvertebrates found in different mesohabitats using principal component analysis (PCA). Similar site grouping was obtained in riffle, pool and abiotic analysis.The measures of diversity and abundance were used as replicates in ANOVA analysis to test differences between pools and riffles within the groups of sites. There were no significant differences in terms of taxa richness and total abundance.When we compared the abundance of each taxon we found significant differences only in the group of reference sites with 18 taxa (about 25%) that showed a significant habitat preference.Our findings support that macroinvertebrates assemblages reflected primarily the environmental conditions and differences at mesohabitat scale are strongly correlated to hydromorphological condition and are maximized in reference sites. However such differences do not influence the ecological status assessment in this typology.     

Spatial Patterns in the Distribution,Diversity and Abundance of Benthic Foraminifera around Moorea (Society Archipelago,French Polynesia)

Coral reefs are now subject to global threats and influences from numerous anthropogenic sources. Foraminifera, a group of unicellular shelled organisms, are excellent indicators of water quality and reef health. Thus we studied a set of samples taken in 1992 to provide a foraminiferal baseline for future studies of environmental change. Our study provides the first island-wide analysis of shallow benthic foraminifera from around Moorea (Society Archipelago). We analyzed the composition, species richness, patterns of distribution and abundance of unstained foraminiferal assemblages from bays, fringing reefs, nearshore and back- and fore-reef environments. A total of 380 taxa of foraminifera were recorded, a number that almost doubles previous species counts. Spatial patterns of foraminiferal assemblages are characterized by numerical abundances of individual taxa, cluster groups and gradients of species richness, as documented by cluster, Fisher α, ternary plot and Principal Component Analyses (PCA). The inner bay inlets are dominated by stress-tolerant, mostly thin-shelled taxa of Bolivina, Bolivinella, Nonionoides, Elongobula, and Ammonia preferring low-oxygen and/or nutrient-rich habitats influenced by coastal factors such as fresh-water runoff and overhanging mangroves. The larger symbiont-bearing foraminifera (Borelis, Amphistegina, Heterostegina, Peneroplis) generally live in the oligotrophic, well-lit back- and fore-reef environments. Amphisteginids and peneroplids were among the few taxa found in the bay environments, probably due to their preferences for phytal substrates and tolerance to moderate levels of eutrophication. The fringing reef environments along the outer bay are characterized by Borelis schlumbergeri, Heterostegina depressa, Textularia spp. and various miliolids which represent a hotspot of diversity within the complex reef-lagoon system of Moorea. The high foraminiferal Fisher α and species richness diversity in outer bay fringing reefs is consistent with the disturbance-mosaic (microhabitat heterogeneity) hypothesis.Calculations of the FORAM Index (FI), a single metric index to assess reef vitality, indicate that all fore- and most back-reef environments support active carbonate accretion and provide habitat suitability for carbonate producers dependent on algal symbiosis. Lowest suitability values were recorded within the innermost bays, an area where natural and increasing anthropogenic influences continue to impact the reefs. The presence of habitat specific assemblages and numerical abundance values of individual taxa show that benthic foraminifera are excellent recorders of environmental perturbations and good indicators useful in modern and ancient ecological and environmental studies.     

Individual variation in habitat use and growth of male and female brown trout

We examined variation in growth and habitat use of individually PIT‐tagged brown trout Salmo trutta in three stream enclosures, each divided into a fine substrate, deep pool habitat and a coarse substrate, shallow habitat. Habitat use and movements of individual fish were monitored continually by placing PIT detectors between habitats. All fish were measured and weighed biweekly over a three month period. There was no significant relationship between habitat use and initial body size, nor was there a consistent relationship between habitat use and densities of benthic macroinvertebrates or abundance of drifting invertebrates in the two habitats. Most habitat changes occurred at night, with activity peaks just prior to sunrise and after sunset. Trout used pools more at night than during the day. Within any given day, diurnal and nocturnal habitat use of individual fish varied little, with variation greater at night than during the day. Partial habitat segregation by sex was observed; only males used pools extensively during daytime, whereas males and females used riffles.
Growth rate was positively related to use of pools during daytime but not at night. Growth rate was also affected by enclosure, with growth rates being highest in the most downstream enclosure, which had the deepest pool (mean of 42 cm) and lowest in the most upstream enclosure, which had the shallowest pool (mean of 28 cm). A complete exchange of trout between the most upstream and downstream enclosure indicated that the enclosure effect was due to physical differences and not to individual fish differences between enclosures. The effect appears to have been caused by differences in depth as daytime use of pools was correlated with the area of the pool ≥35 cm deep, and production of trout biomass per enclosure was directly related to mean pool depth. Our results suggest that there is a relationship between habitat use and growth of individuals that is independent of body size, but that this relationship is influenced by sex of the fish and by the physical characteristics of the environment. Further, the data indicate that short‐term behavioral decisions on habitat use by brown trout have a potential effect on longer‐term individual fitness through growth rates.     

Declines in littoral species richness across both spatial and temporal nutrient gradients: a palaeolimnological study of two taxonomic groups

1. Using a palaeolimnological approach in shallow lakes, we quantified the species richness responses of diatoms and Cladocera to phosphorus enrichment. We also examined differences in species richness responses between littoral and pelagic assemblages of our focal communities. To address both spatial and temporal relationships, our study includes an analysis of both surface sediments from 40 lakes and of a lake sediment record spanning c. 120 years. The objective of our study was to determine whether similar species richness patterns occurred across trophic levels, as well as along spatial and temporal gradients. 2. We found that both diatom and Cladocera species richness estimates significantly declined with increasing phosphorus across space and through time. When the assemblages were subdivided according to known habitat preferences, littoral biodiversity maintained a negative trend, whereas pelagic species richness tended to show no relationship with phosphorus. 3. Negative productivity–diversity patterns have been observed across almost all palaeolimnological studies that span large productivity gradients. This congruence in patterns is most likely due to the similarity in data collection methods and in focal communities studied. The contrasting responses between littoral and pelagic assemblages may be explained by the differences in physical habitat and the pool of taxa in each of these environments. Consistent with the literature, we found statistical support for the idea that littoral diversity declines could be explained by an interaction between macrophytes and nutrients along strong trophic gradients. The general lack of a diversity response in our pelagic assemblages could be attributable to the limited pool of subfossil taxa. The response of the pelagic diatom could also be related to their broad range of nutrient tolerances. 4. The observed negative response of species richness to phosphorus enrichment, particularly in the littoral assemblages, has implications for ecosystems functioning because communities with reduced biodiversity often are less resilient to anthropogenic change.