Can adult and juvenile European rabbits be differentiated by their pellet sizes?

Recently, a new method for differentiating juvenile and adult rabbits based on faecal pellet size was published. According to this method, pellets >6 mm diameter are inferred to be deposited by adults, while those <6 mm are inferred to be from juveniles or kittens. In this study, we designed a simple experiment to test the accuracy of this methodology. Twelve adult rabbits were housed in individual outdoor cages and their pellets were removed every day for 10 consecutive days. Pellets were separated using a sieve according to their size and counted. Results showed that adult rabbits produce pellets >6 mm diameter in the same proportion as those <6 mm. We also observed a strong influence of the individual rabbit on pellet size; some rabbits produce a high proportion of pellets >6 mm, whereas others deposit mostly pellets <6 mm in size. Our findings demonstrate that pellet size is unsuitable for aging wild rabbits. Field biologists should therefore be cautious when employing the pellet size method of age determination in other wild animals in the absence of validating studies.     

Evidence against the use of fecal pellet size for age determination in European wild rabbits

Techniques for estimating the age of wild animals are crucial to many aspects of the study of population biology. Accurate estimates of the proportion of different age classes in wild rabbit populations would be very useful, and the possibility that it could be obtained from the pellet size holds great appeal. However, this suggestion has created controversy in the literature as this technique has not been validated. This study involved assessment of whether threshold fecal pellet diameters could be used to differentiate adult and juvenile rabbits. The proportion of adults in four wild rabbit populations living in semi-natural conditions was compared with the proportion of animal pellets greater than threshold diameters of 6 mm and 4 mm. Our results suggest that inferring a relationship between the proportion of pellets >6 mm diameter and the proportion of adults in a population is not applicable to European wild rabbits, and that the use of this method could produce erroneous interpretations. The use of a 4 mm pellet diameter threshold appeared to produce even more inaccurate results. Studies that use this technique should include validation, as the results can vary greatly among individuals and populations.     

Population estimation and monitoring of an endangered lagomorph

We conducted the most intensive estimate of the endangered Lower Keys marsh rabbit (Sylvilagus palustris hefneri) metapopulation to date using pellet surveys and capture–recapture methodology. We livetrapped 83 rabbits, evaluated 5 closed population models, and selected the model that best represented the data. We considered the variation in behavioral response model the best model and correlated (r² = 0.913) its patch population estimates to patch pellet densities. From the prediction equation, we generated a range-wide metapopulation estimate of 317 rabbits, a western clade population of 257 rabbits, an eastern clade population of 25 rabbits, and translocated marsh rabbit populations of 35 and zero on Little Pine and Water keys, respectively. A subset of patches whose marsh rabbit subpopulations were last estimated in 1993 exhibited a 46% decline in abundance over 15 yr. Due to the low estimate of the eastern clade population, special effort should be initiated to avoid loss of genetic diversity. The prediction equation suffers from limited data at high pellet densities, patches with ≥5 pellets/m². Future studies should investigate if the slope of the regression is indeed near 1 by sampling patches across the range of pellet densities, especially those with ≥5 pellets/m². The equation provides managers a quick, efficient, and noninvasive method to estimate marsh rabbit abundance from pellet counts but the confidence of predicted rabbit densities from high pellet density patches is low. © 2011 The Wildlife Society     

使用粪堆数量估计日本奄美群岛上琉球兔的种群数量

为了测量奄美岛上濒危物种琉球兔 (Pentalagusfurnessi)的丰盛度 ,我们计数了森林中道路、溪流和森林地被物中的粪堆数量。计算用的模型包括新粪堆的数量及其年龄、总粪堆数量、每天产生的平均粪堆数 ,以及在森林地被物和溪边的粪堆数量的回归方程。估计在 1 993- 1 994年期间该岛上有 2 5 0 0 - 6 1 0 0只琉球兔 ,在 2 0 0 2 - 2 0 0 3年间有 2 0 0 0 - 4 80 0只。通过比较粪便丰盛度和在森林道路旁观察到的琉球兔数量 ,我们考察了该模型的有效性 ,最后将以前调查的数据应用于该模型以确定种群下降的程度     

Optimization and accuracy of faecal pellet count estimates of population size: The case of European rabbits in extensive breeding nuclei

Cost-effective indices to estimate relative abundances of species are crucial for their management and conservation. As an example, population indices are needed to monitor extensive breeding nuclei used for translocating wild rabbit populations. Based on counts of faecal pellets from four high density rabbit nuclei in southwest Spain: (i) we assess the accuracy of this population index in high-density populations; and (ii) present a simulation approach to evaluate how the reduction of the counting effort affects accuracy of the population estimates. Our findings suggest that this method provides a valid estimate in high-density rabbit populations, and, notably, estimates would have not substantially changed after a reduction of 45–65% in the number of counted plots depending on variation on rabbit density between nuclei. We provide a framework that managers and other scientists could use to improve data collection of pellet counts in order to optimize their chances of detecting relative abundance estimates of rabbits. In addition, we present a R function to implement our approach that can easily be applied in a variety of monitoring programmes for other species based on count data. This will likely help to reduce field-effort in different studies without compromising population indices estimates.     

Leader of the pack: faecal pellet deposition order impacts PCR amplification in wombats

DNA sourced from faeces is notoriously less reliable than that from tissue. Hence, understanding whether faecal pellet quality varies within faecal piles may be important for sample selection. We hypothesized that the order in which faecal pellets are deposited may influence microsatellite polymerase chain reaction (PCR) amplification success from sampled faeces, more specifically, that first pellets deposited will have signatures of greater success than later ones. In a first test of the hypothesis, first and later-deposited pellets, as determined from the direction of footprints, were collected from fresh (overnight) faecal piles of northern hairy-nosed wombats (Lasiorhinus krefftii). DNA extracts were typed for seven microsatellite loci. We found that faecal deposition order significantly affected optical density of bands on autoradiographs (a measure of PCR amplification success) when the first faecal pellet was compared with the last one, but not when the first pellet was only distinguishable from later ones. The absence of a difference in amplification rate between first and later pellets is likely a reflection of the overall high amplification success in this study. That first pellets deposited yield more product suggests they contain more intestinal cells. Although further comparisons are needed, these results may inform sample selection in species for which success of microsatellite PCR amplification of faecal DNA is low. Deposition order may have more of an impact on amplification success and genotyping errors as faecal age increases.     

Iberian Rock Lizards (Lacerta monticola cyreni) Assess Conspecific Information Using Composite Signals from Faecal Pellets

A field and laboratory study was performed to analyse the role of excrement deposited on the substrate in intraspecific communication of the Iberian rock-lizard (Lacerta monticola cyreni). In the field, lizards selected specific sites on rocks to deposit faecal pellets, probably in order to facilitate visual location of pellets by conspecifics. Differential tongue flick rates to chemicals presented on cotton swabs demonstrated that male lizards can detect and discriminate between self-produced scents from faecal pellets and those of other conspecific males. In a subsequent experiment, male lizards were tested in a chamber with two platforms containing a faecal pellet of other male on one side and a control artificial pellet on the opposite side. Males spent significantly less time on the side containing the faecal pellet, suggesting that the decision of where to stay may depend on the presence of faecal pellets. Smaller males moved less than larger males on the experimental side whereas on the control side body size did not influence the proportion of time moving. The ability to discriminate chemicals from faeces, and the effects of faecal pellets on lizard behaviour, suggests that faeces might act as composite signals (visual and chemical) in the intraspecific communication of this lizard.     

Size-Dependent Chemosensory Responses to Familiar and Unfamiliar Conspecific Faecal Pellets by the Iberian Rock-Lizard, Lacerta monticola

We conducted a field study to analyse the social relationships between males of the Iberian rock lizard (Lacerta monticola). The degree of familiarity was determined based on the degree of overlap between their home ranges. We then designed a laboratory experiment to test whether the same males were able to discriminate between familiar and unfamiliar conspecifics using faecal pellet odours. Differential tongue‐flick rates suggest that large males (snout‐to‐vent length, SVL > 75 mm), at least, may discriminate between odours of familiar and unfamiliar males. The behavioural responses were dependent on relative differences in body size between the responding male and the male that donated the faecal pellet. Thus, as responding small males increased in size relative to their corresponding familiar male, their rate of tongue‐flicking significantly decreased; this was not the case in response to unfamiliar males. In contrast, there were no significant correlations between the response of large males to familiar or unfamiliar male stimuli, regardless of size differences. These results suggest that chemical cues contained in faecal pellets allow individual recognition in male L. monticola, and that the response depends on body size. We suggest that faecal pellets might be used to scent‐mark home ranges, which would contribute to lowering the costs of aggressive interactions.     

Evaluating the interaction of faecal pellet deposition rates and DNA degradation rates to optimize sampling design for DNA‐based mark–recapture analysis of Sonoran pronghorn

Knowledge of population demographics is important for species management but can be challenging in low‐density, wide‐ranging species. Population monitoring of the endangered Sonoran pronghorn (Antilocapra americana sonoriensis) is critical for assessing the success of recovery efforts, and noninvasive DNA sampling (NDS) could be more cost‐effective and less intrusive than traditional methods. We evaluated faecal pellet deposition rates and faecal DNA degradation rates to maximize sampling efficiency for DNA‐based mark–recapture analyses. Deposition data were collected at five watering holes using sampling intervals of 1–7 days and averaged one pellet pile per pronghorn per day. To evaluate nuclear DNA (nDNA) degradation, 20 faecal samples were exposed to local environmental conditions and sampled at eight time points from one to 124 days. Average amplification success rates for six nDNA microsatellite loci were 81% for samples on day one, 63% by day seven, 2% by day 14 and 0% by day 60. We evaluated the efficiency of different sampling intervals (1–10 days) by estimating the number of successful samples, success rate of individual identification and laboratory costs per successful sample. Cost per successful sample increased and success and efficiency declined as the sampling interval increased. Results indicate NDS of faecal pellets is a feasible method for individual identification, population estimation and demographic monitoring of Sonoran pronghorn. We recommend collecting samples >7 days old and estimate that a sampling interval of 4–7 days in summer conditions (i.e. extreme heat and exposure to UV light) will achieve desired sample sizes for mark–recapture analysis while also maximizing efficiency.     

利用过夜地粪便估计白马雪山黑白仰鼻猴种群大小和组成

介绍了应用过夜地粪便来估计白马雪山黑白仰鼻猴群大小和组成的一种方法。该物种以单雄多雌单元和全雄组的形式在树上过夜。粪粒根据其大小可分为3种类型成年雄性的(最大)、成年雌性的(中等大小)和未成年个体的(最小)。2000—2001年,搜集了滇西北白马雪山国家级自然保护区北部南任村(99°04′E,28°34′N)附近黑白仰鼻猴群每个季节2个过夜地的粪粒。根据2001年11月猴群通过开阔地的数据来确定猴群组成。每个季节,由于单雄多雌单元的成年个体数与其粪粒数正相关,所以二者回归直线的斜率可以看作是每个个体每晚的平均排便量。由于该物种的栖息地主要为高山峡谷,而且能见度较低,因此,利用过夜地粪便比以前通过猴群活动痕迹来估计猴群大小和组成相对准确、可靠。从估计成年雌性个体数的角度看,利用粪粒来估计种群大约有9·4%的偏差。导致偏差的可能原因有杂草和灌丛对粪粒准确计数的影响、个体排粪率的差异以及成年雄性最小粪粒与成年雌性最大粪粒的混淆等。该方法适应于栖息地和主要食物与本文研究种群相似的其他种群。     

Rapid species identification of pygmy rabbits (Brachylagus idahoensis) from faecal pellet DNA

The pygmy rabbit (Brachylagus idahoensis) is a small lagomorph of the western United States that specializes in sagebrush (Artemisia spp.) habitat. Intensive habitat loss and modification have increased the vulnerability of pygmy rabbit populations, but the current geographic distribution and population status remain unclear. To aid in detection and population monitoring, we developed a species identification test that uses mitochondrial DNA species-specific primers to distinguish among six sympatric lagomorph species using DNA isolated from faecal pellets. Applying this test, we successfully identified the species of origin for all pellet samples that produced a positive PCR result (77% of 283 pellets collected). Pellets collected during the winter (December-February) had higher PCR success rate (93%) than pellets collected at other times of the year (72%). This test, using non-invasive genetic sampling of faecal pellets, provides an efficient method for assessing site occupancy and distribution of pygmy rabbits and other lagomorphs across large geographic areas.     

Production and fate of faecal pellets during summer in an East Antarctic fjord

The abundance of small faecal pellets is high in marine waters. Little is known, however, about the processes governing their production and fate in the water column. We investigated faecal pellet production and flux in relation to the phytoplankton and copepod assemblages present in Ellis Fjord, Antarctica. Results show that the phytoplankton community shifted from a dominance of diatoms to that of a cryptomonad species during late January. This coincided with an increase in abundance of the small copepods Paralabidocera antarctica and Oithona similis, although Oncaea curvata was still the dominant species. The mean faecal pellet flux was 9943 pellets m^–2 d^–1. Only 37% of the faecal pellet flux at 5 m sedimented to 10 m depth, 15% to 20 m, and 12% to 40 m depth. Our results suggest that recycling of faecal pellets by copepods contributes to this decreased flux with increasing depth, which concurs with results from large scale oceanic studies. Additionally, we propose that the summer ice melt changes the physical characteristics of the water column and the phytoplankton species abundance and distribution; both of which potentially impact on the distribution and abundance of copepods, thereby regulating faecal pellet flux.     

Dung pellets used to identify the distribution and density of dik‐dik

Estimates of the population density of elusive animals based on counts of dung deposits are often inaccurate. We report a refinement of this technique for territorial ungulates which exploits variation in pellet characteristics between individuals. In a study of Kirk's dik‐dik ( Madoqua kirki ) we found that pellet size and shape were less variable within individuals than between individuals. These findings were used to census a Kenyan population entirely on the basis of uniquely identifiable pellet groups, without any prior knowledge of the identity and location of individuals. The estimates were later compared with the results of an extensive capture and radio telemetry study. Population density estimated by the pellet‐matching method and by telemetry differed by less than 5%. In addition, only one border of 18 territories was incorrectly assigned, and only one territory was not detected. This represents a significant improvement in accuracy over indiscriminate dung counting techniques. We suggest that this method may also provide an accurate and non‐intrusive way of estimating population density in other solitary ungulates.     

ASSESSMENT OF POTENTIAL BIAS WITH SNOWSHOE HARE FECAL PELLET-PLOT COUNTS

Abstract: The fecal pellet-plot method has been used extensively for snowshoe hare (Lepus americanus) population studies across the species' range, but potential biases associated with the technique have not been addressed adequately. We studied hare pellet-plots in northern Idaho to quantify pellet decomposition rates across environmental gradients, and conducted feeding trials on captive hares to assess the role of diet on pellet production rates. We found that across our study area pellet numbers tended to be higher on plots with high vegetative cover, which likely was a reflection of hare habitat choice rather than lesser pellet decomposition in such habitat. A pellet decomposition experiment indicated that pellet persistence was negatively related to moisture level, and that pellets produced by hares during summer decomposed more quickly than those from winter. We found that only 19% of fecal pellets collected from plots located across northern Idaho were produced by hares during winter. There was a correlation between pellet numbers from plots that were pre-cleared 1 year earlier and estimated numbers of hares on 6 study areas. A similar correlation was lacking for pellet counts from uncleared plots, implying that hare population estimation via pellet-plot counts should involve plot pre-clearing. In captive studies, juvenile hares produced slightly fewer pellets per day per gram of food ingested than adults, but pellet production was similar across diets comprised of 10 different browse species. We conclude that for our study area the fecal pellet-plot method may be subject to notable pellet decomposition bias, and therefore recommend that use of the method elsewhere across the species' range be preceded by assessment of both the pellet-hare density relationship and pellet decomposition rates across habitats.     

A mathematical model for the growth of mycelial pellet populations

In liquid culture, filamentous organisms often grow in the form of pellets. Growth result in an increase in radius, whereas shear forces result in release of hyphal fragments which act as centers for further pellet growth and development. A previously published model for pellet growth of filamentous microorganisms has been examined and is found to be unstable for certain parameter values. This instability has been identified as being due to inaccuracies in estimating the numbers of fragments which seed the pellet population. A revised model has been formulated, based on similar premises, but adopting a finite element approach. This considers the population of pellets to be distributed in a range of size classes. Growth results in movement to classes of increasing pellet size, while fragments enter the smallest size class, from which they grow to form further pellets. The revised model is stable and predicts changes in the distribution of pellet sizes within a population growing in liquid batch culture. It considers pellet growth and death, with fragmentation providing new centers of growth within the pellet population, and predicts the effects of shear forces on pellet growth and size distribution. Predictions of pellet size distributions are tested using previously published data on the growth of fungal pellets and further predictions are generated which are suitable for experimental testing using cultures of filamentous fungi or actinomycetes. (c) 1995 John Wiley & Sons, Inc.     

Minimum sampling effort for reliable non-invasive estimations of excretion abundance of Elaphostrongylus cervi L1 in red deer (Cervus elaphus) populations

Faecal surveys are commonly used as non-invasive means to evaluate population abundance of animals as well as comparable indexes of prevalence and intensity of diseases between populations, especially macroparasites. While faecal surveys are among one of the simplest means to perform these evaluations, they are time consuming and labour intensive. The present study evaluated 80 red deer (Cervus elaphus) faecal samples collected in two study sites for the presence and abundance of first-stage larvae of the nematode Elaphostrongylus cervi and established pools of samples for epidemiological analysis. The analysis of 20-30 individual samples would produce a reliable estimate of the 'true' prevalence, and the error of the smaller sample size only doubled that of the 80 reference samples. The analysis of 5 pools of 5 pellet groups each, or of 4 pools of 10 pellet groups each, provided a reliable estimation of the 'true' excretion abundance estimated by the analysis of all 80 samples. These pools comprise a cost-effective and dependable alternative for measuring and obtaining comparable abundances of parasitic faecal excretion stages in red deer populations, which is very valuable for epidemiological and ecological research as well as for management purposes.     

Estimating dung decay rates of roe deer (<Emphasis Type="Italic">Capreolus capreolus</Emphasis>) in different habitat types of a Mediterranean ecosystem: an information theory approach

For elusive species living in concealing habitats (e.g. deer in a forest habitat), indirect methods such as faecal pellet counts are considered more practical means of estimating population density and abundance. Accurate estimation of deer density using the faecal standing crop (FSC) method necessitates the reliable estimation of the mean time to decay of pellet groups present during the survey. Mean time to decay is generally habitat specific, and separate estimations should be made for each habitat type in the study area. In a confined mountainous area of Greece, the habitat-specific mean time to decay of roe deer pellet groups was estimated by locating and marking fresh pellet groups on several dates in the lead up to an FSC survey and returning to the marked signs at the time of the survey to record whether or not each pellet group had survived. Several logistic models were fitted to the data, and estimations were based on a multi-model inference (MMI) approach according to information theory. The highest mean time to decay was estimated in coniferous forests, while mid-ranged values were found in maquis shrubs, and the lowest mean time to decay was observed in open areas. MMI by model averaging, based on Akaike weights, is recommended for making robust parameter estimations and for dealing with uncertainty in model selection.     

Vertical distribution of faecal pellets during FLEX '76

During FLEX '76 (Fladen Ground Experiment), the vertical distribution of faecal pellets was studied at a time station on the Fladen Ground (North Sea). Generally, the faecal pellets showed a clearly-defined maximum above the main thermocline within a depth of 0–30 m. Only in a period of storms was the faeces-maximum lowered to the main thermocline, which occurred at 50–60 m depth. The maximum numbers of the copepodCalanus finmarchicus, the most important producer of faecal pellets, initially occupied the same level as the faeces maximum. However, from the middle of May, theC. finmarchicus population started a diel vertical migration, during which, as a rule, the copepods migrated away from the surface region into deeper waters. On this occasion, the faecal pellet maximum did not break up but remained in the uppermost layer of the water column. The high concentrations of faecal pellets found within the uppermost 30 m of the water column contradict the extremely high sinking rates of faeces reported by various authors. The quotients of the depth-integrated counts of faecal pellets andC. finmarchicus individuals were calculated. The main maximum of faeces per individual occurred in the period between 28 April and 6 May 1976. A second, smaller maximum was documented between 23–28 May 1976. These two maxima coincided with the development of phytoplankton blooms observed at this particular time station.JONSDAP '76 Contribution No. 68.     

Monitoring ungulates in steep non-forest habitat: a comparison of faecal pellet and helicopter counts

Faecal pellet counts have been widely used to monitor the abundances of introduced ungulates in New Zealand, but ground-based sampling cannot be conducted safely in the steep non-forest habitats that are common in New Zealand's Southern Alps. Helicopter counts may be an effective technique for monitoring ungulates in steep non-forest habitat. We evaluated the relationship between faecal pellet and helicopter counts of ungulates (primarily feral goat Capra hircus) at 12 non-forest sites in the Southern Alps. Within each site we counted the numbers of ungulates from a helicopter on three occasions and the number of intact faecal pellets along 30 transects. Mean observed densities of feral goats derived from helicopter counts ranged from 0.0 to 20.2 km^?2. There was a positive curvilinear (concave down) relationship between faecal pellet and helicopter counts. Compared with faecal pellet counts, helicopter counts were cheaper, could identify ungulate species and provided estimates of absolute density. Helicopter counts are a cost-effective method for monitoring ungulates in the steep non-forest habitats of New Zealand's Southern Alps.