Molecular phylogeny of Mugilidae fishes revised

Systematics derived from morphological characters often does not correspond with the evolutionary processes underlying the divergence within a group of organisms. In the family Mugilidae (Teleostei) morphological similarities have resulted in inconsistencies between taxonomy and phylogeny among its species, and particularly for the genera Mugil, Liza and Chelon where both intrageneric and intergeneric phylogenetic clarifications are needed. To address these issues, the direct sequencing of the mitochondrial region that encodes Phenylalanine (69 bp), 12S rRNA (842 bp), cytochrome c oxidase subunit I (651 bp) and cytochrome b (702 bp) was carried out. The data reveal that Mugil platanus and Mugil liza represent a continuum of a single species, closely related to but distinct from Mugil cephalus which itself appears to comprise a grouping of multiple and closely related species. This species complex was genetically distinct from Mugil curema, which, based on three clearly diverged species identified in this study along the Atlantic coast of the Americas, requires extensive taxonomic revision throughout its world-wide distribution. Unlike the monophyly supported within Mugil, relationships within Liza are paraphyletic, and a taxonomic revision of the genera Liza, Chelon and Oedalechilus is needed.     

Phylogenetic relationships of mullets (Mugilidae) in China Seas based on partial sequences of two mitochondrial genes

Phylogenetic analyses of Mugilidae species from the China coast were carried out based on 16S and 12S rRNA mitochondrial gene sequences by maximum parsimony, maximum likelihood, Bayesian inference and neighbor joining analysis in the present study. The results suggested that Mugil cephalus is the most genetically divergent species among the Mugilidae. The four Liza species clustered together and formed a monophyletic group. The genera Osteomugil showed closer affiliation with Valamugil than with Ellochelon; these three genera then grouped together to form a monophyletic clade presenting as the sister group to Liza. Analyses of phylogenetic and genetic distance indicated that Southern and Northern lineages of Liza haematocheila may be two different species; likewise, strong genetic divergence existed between Southern and Northern M. cephalus lineages. In addition, our results supported the Southern origin of Chinese Mugilids, which is contrary to the hypothesis based on morphological characters.     

New latest Permian foraminifers from Laren (Guangxi Province, South China): Palaeobiogeographic implications

Microfacies analyses performed on the latest Permian Wujiaping Formation at Laren (Guangxi Province, South China) show that the bioclastic-rich limestones of Late Permian age contain a rich and well-diversified foraminiferal fauna. This fauna is here revised in order to be compared with time-equivalent levels of southern Iran and southern Turkey. Some new and unexpected phylogenetic trends are highlighted among the biseriamminoids. The new or poorly known genera Retroseptellina, Septoglobivalvulina, Paraglobivalvulinoides, Dagmarita?, Bidagmarita nov. gen., Louisettita, Paradagmaritopsis nov. gen. and Paradagmarita? are concerned. Nevertheless, these newly appeared biseriamminoids are subordinate to abundant Tetrataxis and Climacammina, ultimate survivors of the families Palaeotextulariidae and Tetrataxidae, appeared as old as the Early Carboniferous (“Mississippian”). Algae, miliolids, and nodosarioids are poorly represented. Two genera and four species are here newly described: Globivalvulina curiosa nov. sp., Louisettita ultima nov. sp., Bidagmarita nov. gen., Bidagmarita sinica nov. gen. nov. sp., Paradagmaritopsis nov. gen., Paradagmaritopsis kobayashii nov. gen. nov. sp. The palaeogeographic distribution of these foraminifers is interpreted to be typically of Neo-Tethyan regions, ranging from southern Turkey (Hazro) to South China (Laren) and up to Japan for some species (i.e., Paradagmaritopsis). At Laren, Late Permian strata are generally characterized by Reichelina ex gr. simplex Sheng. Isolated samples of packstones, collected in Tsoteng region (Guangxi Province, South China), contain Sphaerulina sp. together with various smaller foraminifers and numerous representatives of the new species G. curiosa nov. sp. In this study we demonstrate that the regions of Zagros (Iran), Taurus (Turkey), South China and even Japan shared similar foraminiferal assemblages and represented intermittently connected palaeobiogeographic provinces during Late Permian times.     

Lower Carboniferous (middle Visean) foraminifers and algae from an interior sea,Southern Carnarvon Basin,Australia

A moderate diversity biota of foraminifers, algae and calcareous microproblematica is recorded from the Lower Carboniferous Yindagindy Formation within the intracratonic Southern Carnarvon Basin in Western Australia. Very shallow metahaline to hypersaline conditions are suggested. The palaeobotanical components are sporadic calcitarcha, tuberitinaceans, codiaceans Orthriosiphon? sp. 1, dasycladaleans? Koninckopora tenuiramosa, and algosponges Issinella devonica, Serrisinella cf. serrensis, Issinella? sp. 1, Kamaena cf. awirsi, Proninella? sp. and Stacheoides spp. The foraminiferal assemblage is dominated by a new koktjubinid taxon: Praekoktjubina yindagindyensis nov. gen., nov. sp. Subordinate associated foraminifers are more sporadic Salpingothurammina? sp. 1, Plectinopsis michelseni nov. gen., nov. sp., Rectopravina multifida nov. gen., nov. sp. (with 4 morphotypes), and scarce Endothyra spp. Despite many of these taxa being endemic, a middle Visean age is probable, based on: (1) the maximum global geographic extent of K. tenuiramosa reached during the middle Visean, (2) the disappearance of Plectinopsis nov. gen. in Palaeotethys and the Urals, and (3) the first occurrence of Praekoktjubina nov. gen. in Palaeotethys. An age no older than the middle Visean is supported by sparse conodonts from the Formation and comparison to episodes of carbonate deposition in the Bonaparte Basin, further north in the East Gondwana rift system. Absence of middle Visean archaediscoids may be due to high salinity. The following algal and foraminiferal families and superfamilies are emended: Scribroporellaceae (a lectotype is selected for Orthriosiphon saskatchewanense); Palaeospiroplectamminidae (due to the creation of Plectinopsis nov. gen.); Haplophragminoidea (due to the creation of Rectopravina nov. gen.); and Globivalvulinoidea and Koktjubinidae (due to the creation of Praekoktjubina nov. gen.).     

Honghea xui gen. et sp. nov., the second Earliest Jurassic damsel-dragonfly (Odonata: Campterophlebiidae) from the Junggar Basin,NW China

A new campterophlebiid damsel-dragonfly, Honghea xui gen. et sp. nov., is described from the Lower Jurassic Badaowan Formation of the Junggar Basin, NW China. This is the second Chinese Campterophlebiidae recorded for the earliest Jurassic, reflecting the quick diversification and radiation of the damsel-dragonflies during this period. H. nouveau onghea gen. nov. is closely related to Chinese genera Zygokaratawia and Ctenogampsophlebia, both from the Middle Jurassic of the Daohugou Biota; but differs from these genera in having a larger wing size, RP2 slightly distal of Sn, and a narrower area between IR2 and RP3/4.     

A distinct large vole lineage from the Late Pliocene - Early Pleistocene of China

A distinct large vole lineage involving three species from the Late Pliocene - Early Pleistocene of China is morphologically and quantitatively delineated. A special sinuous line (linea sinuosa) pattern, not previously recognized, diagnoses the new lineage, and distinguishes the species in the lineage from all other vole genera known either from China or elsewhere. At present, only two morphologically discrete evolutionary stages can be recognized in the lineage. The primitive stage is represented by rooted Mimomys peii and M. banchiaonicus, and the advanced stage is represented by the newly described rootless Heteromimomys zhengi nov. gen., nov. sp. from the Paleolithic site of Renzidong Cave in Anhui Province. The schmelzmuster of M. peii and Heteromimomys zhengi nov. gen., nov. sp. is also examined to provide more details about the lineage. This lineage diverged from Mimomys by the Late Pliocene within North China. The comparison between the arvicoline species co-existing with Heteromimomys zhengi nov. gen., nov. sp. and those from Haiyan Formation in the Yushe Basin, Shanxi Province, suggests the age of Heteromimomys zhengi nov. gen., nov. sp. can be correlated to or predate the Haiyan Formation, which is in reversely magnetized sediment identified as Chron 2r. The loss of roots in the lineage corresponds with a cooling event at the beginning of the Pleistocene, and seems to characterize the Nihewanian age of the Chinese Land Mammal ages from the perspective of arvicoline biochronology.     

Neue Bodenalgen aus den Dolomiten

Five new genera and five new species of alpine soil algae from S. Tyrol are described from cultures and figured. One of them belongs to theXanthophyceas:Heterothrix sessilis, spec. nova, the remaining to theChlorophyceae:Scotiellopsis rubescens, gen. et spec. nov.,Pseudodictyochloris dissecta, gen. et spec. nov.,Chlorozebra cohaerens, spec. nova,Neochloris bilobata, spec. nova,Myrmecia astigmatica, spec. nova,Trochisciopsis tetraspora, gen. et spec. nov.,Pseudotrochiscia areolata, gen. et spec. nov.,Stichococcus undulatus, spec. nova, andHormidiospora verrucosa, gen. et spec. nov.     

New Ichneumonidae (Hymenoptera) from the Upper Cretaceous ambers of the Taimyr Peninsula

Two new genera and four new species of Ichneumonidae are described from the Upper Cretaceous ambers of the Taimyr Peninsula: Agapia sukatchevae gen. et sp. nov., Agapteron popovi gen. et sp. nov., Eubaeus abdominalis sp. nov., and Urotryphon baikurensis sp. nov. New detailed diagnoses are provided for the genera Urotryphon and Eubaeus. The genera Catachora, Urotryphon, and Eubaeus, previously placed in the subfamily Tryphoninae, are transferred to the subfamily Labenopimplinae, as well as the new genera Agapia and Agapteron. Possible causes of the miniaturization in ichneumonid wasps in the Cretaceous are discussed.     

Molecular phylogeny,analysis of character evolution,and submersible collections enable a new classification of a diverse group of gobies (Teleostei: Gobiidae: Nes subgroup), including nine new species and four new genera

The Nes subgroup of the Gobiosomatini (Teleostei: Gobiiformes: Gobiidae) is an ecologically diverse clade of fishes endemic to the tropical western Atlantic and eastern Pacific oceans. It has been suggested that morphological characters in gobies tend to evolve via reduction and loss associated with miniaturization, and this, coupled with the parallel evolution of adaptations to similar microhabitats, may lead to homoplasy and ultimately obscure our ability to discern phylogenetic relationships using morphological characters alone. This may be particularly true for the Nes subgroup of gobies, where several genera that are diagnosed by ‘reductive characters’ have been shown to be polyphyletic. Here we present the most comprehensive phylogeny to date of the Nes subgroup using mitochondrial and nuclear sequence data. We then evaluate the congruence between the distribution of morphological characters and our molecular tree using maximum‐likelihood ancestral state reconstruction, and test for phylogenetic signal in characters using Pagel's λ tree transformations (Nature, 401 , 1999 and 877). Our results indicate that all of the characters previously used to diagnose genera of the Nes subgroup display some degree of homoplasy with respect to our molecular tree; however, many characters display considerable phylogenetic signal and thus may be useful in diagnosing genera when used in combination with other characters. We present a new classification for the group in which all genera are monophyletic and in most cases diagnosed by combinations of morphological characters. The new classification includes four new genera and nine new species described here, many of which were collected from rarely sampled deep Caribbean reefs using manned submersibles. The group now contains 38 species in the genera Carrigobius gen. nov., Chriolepis, Eleotrica, Gobulus, Gymneleotris, Nes, Paedovaricus gen. nov., Pinnichthys gen. nov., Psilotris, and Varicus. Lastly, we provide a key to all named species of the Nes subgroup along with photographs and illustrations to aid in identification.     

Revision of the antillocaprinid rudist bivalve Antillosarcolites Chubb with a description of a new genus: Implications for evolution of Antillocaprinidae

The antillocaprinid rudist bivalve Antillosarcolites Chubb is revised based on abundant specimens from the Campanian of Jamaica. Two genera are recognised: Antillosarcolites, type species Antillosarcolites macgillavryi Chubb, and Parantillosarcolites nov. gen., type species Parantillosarcolites lenticularis nov. gen., nov. sp. These two genera are characterised by distinct myocardinal arrangements and differ by the nature of the fill of the sockets for the myophores and additional toothlet. This revision indicates that the Antillocaprinidae were already highly diverse in the middle Campanian.     

New tempospondyl amphibians from the basal Triassic of the Obshchii Syrt Highland,Eastern Europe

Two new genera (monotypic Samarabatrachus gen. nov. (S. bjerringi sp. nov.) and Syrtosuchus gen. nov. (including S. samarensis (Sennikov, 1981) and S. morkovini sp. nov) and a new species of the genus Selenocara Bjerring (S. rossica sp. nov.) are described based on revision of the original material of the form previously known as Wetlugasaurus samarensis. The genera Selenocara and Samarabatrachus gen. nov. positioned at the base of radiation of Triassic capitosaurids are combined into a new subfamily, Selenocarinae subfam. nov. The genus Syrtosuchus gen. nov., which is undoubtedly a derivative of early capitosaurids (Selenocara or a closely related genus), shows some typical benthosuchid features and is assigned to a separate benthosuchid subfamily, Syrtosuchinae subfam. nov. The diagnoses of the genera Wetlugasaurus Riabinin and Selenocara are amended. For the territory of the Obschii Syrt Highland, the genera Selenocara, Samarabatrachus gen. nov., and Syrtosuchus gen. nov. are regarded as key members of a separate Early Triassic tetrapod assemblage (Selenocara–Syrtosuchus Fauna), which is intermediate between the Tupilakosaurus and Benthosuchus faunas and dated Late Induan (Dienerian).     

Is Cyclocardia (Conrad) a wastebasket taxon? Exploring the phylogeny of the most diverse genus of the Carditidae (Archiheterodonta,Bivalvia)

The carditid genus Cyclocardia is currently the most diverse genus of the family, including nearly 180 nominal species encompassing wide stratigraphical (Cretaceous–Recent) and geographical (Antarctica, South and North America, Europe, Africa, Alaska, Russia, Japan and New Zealand) ranges. Due to the lack of autapomorphies in the diagnosis of the genus and its large account of species, we re-evaluate the systematic and phylogenetic status of Cyclocardia. We applied three approaches: bibliographic revision, phylogenetic analysis and an exploration of morphological disparity. We used a shell–character matrix comprising 65 taxa (2 outgroups, 29 non-Cyclocardia carditids and 28 species of Cyclocardia) for phylogenetic and disparity analyses. Maximum Observable Rescaled Distances was used to construct a distance matrix to compare Cyclocardia species and other carditid groups. According to our results, Cyclocardia represents a non-monophyletic taxon and is thus a ‘wastebasket taxon’, chiefly because its diagnosis was based mainly on plesiomorphic characters. The European species C. kickxi and C. chameformis are placed within Scalaricardita, and the previously proposed genus Crassicardia is monophyletic (including C. crassidens, C. crebricostata, C. isaotakii and C. rjabininae). Three new genera are proposed for new groups identified by the phylogenetic analysis: South American Oesterheldia gen. nov. (including O. cannada and O. dalek), western North American Coanicardita gen. nov. (including C. ventricosa and C. occidentalis), and North Pacific Hippocampocardia gen. nov. (including H. barbarensis, H. hamiltonensis and H. yakatagensis). The newly defined monophyletic Cyclocardia is restricted to the Atlantic Ocean species C. borealis, C. novangliae and C. compressa.     

Crystallicutis gen. nov. (Irpicaceae,Basidiomycota), including C. damiettensis sp. nov., found on Phoenix dactylifera (date palm) trunks in the Nile Delta of Egypt

The taxonomy of Polyporales is complicated by the variability in key morphological characters across families and genera, now being gradually resolved through molecular phylogenetic analyses. Here a new resupinate species, Crystallicutis damiettensis sp. nov. found on the decayed trunks of date palm (Phoenix dactylifera) trees in the fruit orchards of the Nile Delta region of Egypt is reported. Multigene phylogenetic analyses based on ITS, LSU, EF1α, RPB1 and RPB2 loci place this species in Irpicaceae, and forming a distinct clade with Ceraceomyces serpens and several other hitherto unnamed taxa, which we also incorporate into a new genus Crystallicutis. We name two of these species, Crystallicutis huangshanensis sp. nov. and Crystallicutis rajchenbergii sp. nov. The distinctive feature of Crystallicutis gen. nov. is the presence of crystal-encrusted hyphae in the hymenium and subiculum. Basidiomes are usually honey-yellow with white margins but there is variability in the presence of clamp connections and cystidia, as noted for other genera within Irpicacae. C. damiettensis is hitherto consistently associated with date palms killed by the red palm weevil Rhynchophorus ferrugineus, a highly damaging and invasive pest, recently spread to the Mediterranean region. C. damiettensis causes rapid wood decay by a potentially unusual white-rot mechanism and may play a role in the damage caused by R. ferrugineus.     

Magnetospirillum sulfuroxidans sp. nov., capable of sulfur-dependent lithoautotrophy and a taxonomic reevaluation of the order Rhodospirillales

A spiral-shaped, highly motile bacterium was isolated from freshwater sulfidic sediment. Strain J10^T is a facultative autotroph utilizing sulfide, thiosulfate, and sulfur as the electron donors in microoxic conditions. Despite high 16S rRNA gene sequence sequence identity to Magnetospirillum gryphiswaldense MSR-1 ^T (99.6 %), digital DNA-DNA hybridisation homology and average nucleotide identity between the two strains was of the different species level (25 % and 83 %, respectively). Strain J10^T is not magnetotactic. The DNA G + C content of strain J10^T is 61.9 %. The predominant phospholipid ester-linked fatty acids are C18:1ω7, C16:1ω7, and C16:0. Strain J10^T (=DSM 23205 ^T = VKM B-3486 ^T) is the first strain of the genus Magnetospirillum showing lithoautotrophic growth and is proposed here as a novel species, Magnetospirillum sulfuroxidans sp. nov. In addition, we propose to establish a framework for distinguishing genera and families within the order Rhodospirillales based on phylogenomic analysis using the threshold values for average amino acid identity at ̴ 72 % for genera and ̴ 60 % for families. According to this, we propose to divide the existing genus Magnetospirillum into three genera: Magnetospirillum, Paramagnetospirillum, and Phaeospirillum, constituting a separate family Magnetospirillaceae fam. nov. in the order Rhodospirillales. Furthermore, phylogenomic data suggest that this order should accomodate six more new family level groups including Magnetospiraceae fam. nov., Magnetovibrionaceae fam. nov., Dongiaceae fam. nov., Niveispirillaceae fam. nov., Fodinicurvataceae fam. nov., and Oceanibaculaceae fam. nov.     

A NEW LOOK AT AN ANCIENT ORDER: GENERIC REVISION OF THE BANGIALES (RHODOPHYTA)1

The red algal order Bangiales has been revised as a result of detailed regional studies and the development of expert local knowledge of Bangiales floras, followed by collaborative global analyses based on wide taxon sampling and molecular analyses. Combined analyses of the nuclear SSU rRNA gene and the plastid RUBISCO LSU (rbcL) gene for 157 Bangiales taxa have been conducted. Fifteen genera of Bangiales, seven filamentous and eight foliose, are recognized. This classification includes five newly described and two resurrected genera. This revision constitutes a major change in understanding relationships and evolution in this order. The genus Porphyra is now restricted to five described species and a number of undescribed species. Other foliose taxa previously placed in Porphyra are now recognized to belong to the genera Boreophyllum gen. nov., Clymene gen. nov., Fuscifolium gen. nov., Lysithea gen. nov., Miuraea gen. nov., Pyropia, and Wildemania. Four of the seven filamentous genera recognized in our analyses already have generic names (Bangia, Dione, Minerva, and Pseudobangia), and are all currently monotypic. The unnamed filamentous genera are clearly composed of multiple species, and few of these species have names. Further research is required: the genus to which the marine taxon Bangia fuscopurpurea belongs is not known, and there are also a large number of species previously described as Porphyra for which nuclear SSU ribosomal RNA (nrSSU) or rbcL sequence data should be obtained so that they can be assigned to the appropriate genus.     

New curculionoid beetles (Coleoptera: Curculionoidea) from the Baltic amber

New genera and species of curculionid beetles from the Baltic amber, Pseudoglaesotropis martynovi gen. et sp. nov. (Anthribidae), Palaeometrioxena zherikhini gen. et sp. nov. (Belidae), Eocenorhynchites vossi gen. et sp. nov. (Rhynchitidae), and Archaeosciaphilus marshalli gen. et sp. nov. (Curculionidae), are described.     

Eocene siliceous sponges from the Ebro Basin (Catalonia, Spain)

The Eocene (Bartonian) marls of the La Guixa Member and Gurb Member, Vic Marls Formation (Ebro Basin, Catalonia, Spain), contain a very rich and diversified siliceous sponge fauna. The fauna is dominated by hexactinellids; lithistids and other demosponges are rare. It consists of 16 species representing 16 genera. Eleven new species and two new genera are proposed for these sponges: Reguantella cavernosa nov. gen. nov. sp., Regadrella concinna nov. sp. (both Hexactinellida, Lyssacinosa), Eurete clava nov. sp., Pleuroguettardia iberica nov. sp., Aphrocallistes almeriae nov. sp., Hexactinella informis nov. sp. (all Hexactinellida, Hexactinosa), Brachiolites munterensis nov. sp., Centrosia viquensis nov. sp., Callicylix eocenicus nov. sp., Rhizocheton robustus nov. sp. (all Hexactinellida, Lychniscosa), Propetrosia pristina nov. gen. nov. sp. (Demospongia, Haplosclerida). Some genera of sponges in this fauna are still extant, but, in general, the predominant ones are very close in morphology, and, without doubt, closely related to the Late Cretaceous sponges. This fauna also differs considerably, in terms of composition, from most other described faunas of Tertiary sponges from the Mediterranean region, which are dominated by lithistid sponges. Lithistid sponges are rare in this investigated assemblage, which seems most similar to an as yet undescribed Eocene fauna from Italy. There is ecological differentiation in the proportions of particular sponges in various outcrops and/or stratigraphical levels that is clearly associated with water-depth-related controlling factor(s): Munter, Tona and Sta. Cecilia represent the deepest facies, Gurb is intermediate, and St. Roc and Vespella are the most shallow. The exact bathymetric position of the sponge fauna is difficult to estimate, but it seems that 100 m (but probably 200 m and more in the case of the deepest parts) of water depth may be inferred for this facies.     

Kimmeridgian-Volgian Aporrhaidae (Stromboidea: Gastropoda) of the Russian Platform

Kimmeridgian-Volgian Aporrhaidae from European Russia are described for the first time. They are referred to three genera, including two new genera, Undoriptera gen. nov. and Volgacheilus gen. nov. with three new species, Undoriptera tridactylus sp. nov., Volgacheilus rogovi sp. nov., and Dicroloma tenuistriata sp. nov.     

Intraspecific variation in Triassic Ophthalmidiid Foraminifera from Timor

Four ophthalmidiid species are described as free specimens extracted from mudstones and wackestones of Triassic age: Atsabella bandeiraensis nov. gen. nov. sp., Karaburunia atsabensis nov. sp., Ophthalmidium sp. cf. O. primitivum Ho and Spirophthalmidium grunaui nov. sp. Analysis of morphological variation found in large suites of specimens suggests that, as in modern miliolids, apertural characteristics, chamber shape and adult test size are features that vary within narrow limits and may be used to define species. In genera with milioline coiling in the post-embryonic stage, chamber arrangement may be highly variable. Post-embryonic coiling in K. atsabensis varies from quinqueloculine to almost spiroloculine and encompasses morphotypes that, in thin-section studies, have been attributed to a number of other genera. In Timor Leste, A. bandeiraensis, K. atsabensis and S. grunaui have been found with conodonts indicative of the Carnian, but the full local stratigraphic range of these species is uncertain. K. atsabensis occurs at another locality with conodonts suggestive of the Middle Triassic or less likely Carnian. Ophthalmidium sp. cf. O. primitivum has been found at one locality associated with A. bandeiraensis and K. atsabensis in a stratigraphic succession that suggests a correlation to the Carnian or Norian. The ophthalmidiids are found commonly associated with organic-cemented agglutinated and hyaline foraminifera and at some localities common to abundant ostracods and mollusc debris. They were most common in organic-rich carbonate mud of shallow-marine environments.