The Near-Eastern Roots of the Neolithic in South Asia

The Fertile Crescent in the Near East is one of the independent origins of the Neolithic, the source from which farming and pottery-making spread across Europe from 9,000 to 6,000 years ago at an average rate of about 1 km/yr. There is also strong evidence for causal connections between the Near-Eastern Neolithic and that further east, up to the Indus Valley. The Neolithic in South Asia has been far less explored than its European counterpart, especially in terms of absolute (¹⁴C) dating; hence, there were no previous attempts to assess quantitatively its spread in Asia. We combine the available ¹⁴C data with the archaeological evidence for early Neolithic sites in South Asia to analyze the spatio-temporal continuity of the Neolithic dispersal from the Near East through the Middle East and to the Indian subcontinent. We reveal an approximately linear dependence between the age and the geodesic distance from the Near East, suggesting a systematic (but not necessarily uniform) spread at an average speed of about 0.65 km/yr.     

古猿闭壳龟的新材料及该属的地史分布

云南禄丰古猿产地发现的古猿闭壳龟(Cuora pitheca Yeh,1981),是闭壳龟属的首次化石记录。它的发现,把该属的历史从现代一下追溯至中新世晚期。本文除补充记述古猿闭壳龟的新材料外,并结合近年国内外的新发现,综述了该属龟类的地史分布。     

Ancient DNA from South-East Europe Reveals Different Events during Early and Middle Neolithic Influencing the European Genetic Heritage

The importance of the process of Neolithization for the genetic make-up of European populations has been hotly debated, with shifting hypotheses from a demic diffusion (DD) to a cultural diffusion (CD) model. In this regard, ancient DNA data from the Balkan Peninsula, which is an important source of information to assess the process of Neolithization in Europe, is however missing. In the present study we show genetic information on ancient populations of the South-East of Europe. We assessed mtDNA from ten sites from the current territory of Romania, spanning a time-period from the Early Neolithic to the Late Bronze Age. mtDNA data from Early Neolithic farmers of the Starčevo Criş culture in Romania (Cârcea, Gura Baciului and Negrileşti sites), confirm their genetic relationship with those of the LBK culture (Linienbandkeramik Kultur) in Central Europe, and they show little genetic continuity with modern European populations. On the other hand, populations of the Middle-Late Neolithic (Boian, Zau and Gumelniţa cultures), supposedly a second wave of Neolithic migration from Anatolia, had a much stronger effect on the genetic heritage of the European populations. In contrast, we find a smaller contribution of Late Bronze Age migrations to the genetic composition of Europeans. Based on these findings, we propose that permeation of mtDNA lineages from a second wave of Middle-Late Neolithic migration from North-West Anatolia into the Balkan Peninsula and Central Europe represent an important contribution to the genetic shift between Early and Late Neolithic populations in Europe, and consequently to the genetic make-up of modern European populations.     

The Ban Don Mun artifacts: A chronological reappraisal of human occupations in the Lampang province of Northern Thailand

Despite recent stone tool evidence demonstrating a much older Early Pleistocene human presence in India, the timing and geography of human demographic expansions in continental Southeast Asia remains ambiguous. The recent discovery of a series of stone artifacts spread over a basalt level at Ban Don Mun in the Lampang province of northern Thailand presents an ideal opportunity for reevaluating lithic assemblages documented during the 1970s and 1980s in the same region. Both the position of these stone tools and new absolute dates indicate a Middle Pleistocene age and call into question the status of these artifacts as the oldest yet found in Southeast Asia. The uncertain geo-chronological context and technological analysis of the chopper industry from previous work in the Lampang area prompted us to undertake new surveys in continental Southeast Asia in order to help clarify the route and timing of Pleistocene human expansions in this part of the world.     

Dental perspectives on the population history of Southeast Asia

This article uses metric and nonmetric dental data to test the "two-layer" or immigration hypothesis whereby Southeast Asia was initially occupied by an "Australo-Melanesian" population that later underwent substantial genetic admixture with East Asian immigrants associated with the spread of agriculture from the Neolithic period onwards. We examined teeth from 4,002 individuals comprising 42 prehistoric and historic samples from East Asia, Southeast Asia, Australia, and Melanesia. For the odontometric analysis, dental size proportions were compared using factor analysis and Q-mode correlation coefficients, and overall tooth size was also compared between population samples. Nonmetric population affinities were estimated by Smith's distances, using the frequencies of 16 tooth traits. The results of both the metric and nonmetric analyses demonstrate close affinities between recent Australo-Melanesian samples and samples representing early Southeast Asia, such as the Early to Middle Holocene series from Vietnam, Malaysia, and Flores. In contrast, the dental characteristics of most modern Southeast Asians exhibit a mixture of traits associated with East Asians and Australo-Melanesians, suggesting that these populations were genetically influenced by immigrants from East Asia. East Asian metric and/or nonmetric traits are also found in some prehistoric samples from Southeast Asia such as Ban Kao (Thailand), implying that immigration probably began in the early Neolithic. Much clearer influence of East Asian immigration was found in Early Metal Age Vietnamese and Sulawesi samples. Although the results of this study are consistent with the immigration hypothesis, analysis of additional Neolithic samples is needed to determine the exact timing of population dispersals into Southeast Asia.     

763. GUNDELIA TOURNEFORTII

Gundelia tournefortii L. (Compositae: Gundelieae) is described and illustrated, and its strange inflorescence morphology highlighted. The history of the discovery of this fascinating plant is covered from one of the first natural history collections made in the late 16th century in the Levant. The problematic taxonomy of this genus is discussed, both supragenerically and infragenerically. The species has very rarely been cultivated throughout its recent history, making a commentary on its cultivation and propagation a little difficult. The wide range of uses cover a history dating back at least 10,000 years, from the Neolithic sites of Iraq and Turkey, to its present day usage in the region. The importance of herbarium specimen data, as well as literature, for the ethnobotany of taxa is emphasized. A possible biblical connection is commented on in relation to the Shroud of Turin.     

Dental morphology of the Dawenkou Neolithic population in North China: implications for the origin and distribution of Sinodonty

We compare the incidence of 25 nonmetric dental traits of the people of the Neolithic Dawenkou culture (6300-4500 BP) sites in Shandong Province, North China with those of other East Asian populations. The Dawenkou teeth had an overwhelmingly greater resemblance to the Sinodont pattern typical of Northeast Asia than to the Sundadont pattern typical of Southeast Asia. Multidimensional scaling using Smith's mean measure of divergence (MMD) statistic place the Dawenkou sample near the Amur and the North China-Mongolia populations in the area of the plot indicating typical Sinodonty. The existence of the Sinodont population in Neolithic North China suggests a possible continuity of Sinodonty from the Upper Cave population at Zhoukoudian (about 34000-10000 BP) to the modern North Chinese. The presence of Sinodonty in Shandong Province shows that the Japan Sea and East China Sea were strong barriers to gene flow for at least 3000 years, because at this time the Jomonese of Japan were fully Sundadont. In addition, we suggest that the descendants of the Dawenkou population cannot be excluded as one of the source populations that contributed to sinodontification in Japan.     

Invasion history of the oriental fruit fly, Bactrocera dorsalis, in the Pacific-Asia region: two main invasion routes

The oriental fruit fly, Bactrocera dorsalis, was initially recorded in Taiwan Island in 1912, and has dispersed to many areas in the Pacific-Asia region over the last century. The area of origin of the species may be confidently placed in South-East China. However, routes of range expansion to new areas and underlying population processes remain partially unclear, despite having been the subject of several studies. To explore the invasion history of this species, a partition of the cox1 gene of mitochondrial DNA was used to investigate genetic diversity, haplotype phylogeny and demographic history of 35 populations, covering China and South-East Asia and including marginal populations from Pakistan and Hawaii. Based on neighbor-joining tree analysis and the distribution of haplotypes, two main invasion routes are inferred: one from South-East China to Central China, another from South-East China to South-East Asia, with both routes probably coinciding in Central China. Populations in Taiwan Island and Hainan Island might have originated in South-East China. The marginal populations in Pakistan and Hawaii might have undergone founding events or genetic bottlenecks. Possible strategies for the control of this species are proposed based on the invasion history and reconstructed expansion routes.     

La séquence mésolithique et néolithique du Trou Al’Wesse (Belgique) : résultats pluridisciplinaires

The site of Trou Al’Wesse has been interpreted as a site of possible contact between Mesolithic and Neolithic populations, given the discovery of Neolithic ceramics and Mesolithic tools in stratum 4. However, recent excavations have also revealed the presence of three Early Mesolithic facies overlain by a Neolithic layer, while a Late Mesolithic presence is suggested for a fourth facies at the base of the terrace slope. Lithic and faunal analyses, as well as spatial analysis of the stratigraphic position of material recovered, indicate a clear separation of Mesolithic and Neolithic occupations. We present a new interpretation of the sequence of Holocene human occupations at Trou Al’Wesse in light of these data, arguing that the site was regularly occupied during the Early Mesolithic, forming a palimpsest of these visits, followed by an occupational hiatus and then reoccupation during the Late Mesolithic. The Early Neolithic is a separate occupation clearly unrelated to the Early Mesolithic underlying it, but ongoing fieldwork may recover data concerning the Final Mesolithic and its relation to the Early Neolithic at the site.     

Discovery of a Mesolithic burial near the painted rock-shelter of Ban Tha Si (Lampang province,Northern Thailand): Implications for regional mortuary practices

Although the oldest Neolithic cultures in eastern Asia have for the most part been documented in China and Vietnam, a large number of Early Metal Age sites have been reported in northeastern Thailand. On the other hand, the Hoabinhian, principally identified by its characteristic unifacial tools, is known throughout the Late Pleistocene up until 3000 BP and is spread across the whole of continental Southeast Asia. The chronology of Hoabihnian lithic assemblages is still poorly documented and burials from the period are scarce and often do not provide enough information to allow the evolution of regional mortuary practices to be investigated. Here we describe a burial dated to 7047 ± 53 BP found associated with a Hoabinhian stone tool assemblage and fauna near the painted rock-shelter of Ban Tha Si. This discovery provides important new chrono-cultural information for continental Southeast Asia, especially with regard to changing regional mortuary practices.     

Plaidoyer pour un outillage lithique de l’Âge du fer : le cas des maillets à gorge de l’Ouest de la France

The attention is turned here to one kind of tools, characterized by a special morphology: the grooved hammer-stones. They are known in Europe and all over the world in various cultures, as Neolithic or Bronze Age remains and generally linked to extraction or mining activity; but, the discovery of several of these tools in western France, within pre-roman archaeological contexts, especially in sites devoted to marine salt production, leads us to a discussion on dating and the function of such tools, and feeds a more general reflexion about the existence of a specialised lithic set of tools during the Iron Age.     

Reversal of chloroquine resistance in falciparum malaria

Control of falciparum malaria infections has been increasingly hampered by the emergence of parasites resistant to chloroquine, pyrimethomine and other standard anti-malarials. Chloroquine-resistant strains of Plasmodium falciparum, for example, which originally appeared in South-East Asia and South America are now found in East Asia and sub-Saharan Africa(1). Attempts to combat this alarming development have to date taken two main forms: (1) the judicious use of existing ontimalarials, preferably in combinations, in an attempt to delay the emergence of resistance; and (2) on aggressive research effort aimed at identifying a new generation of antimalarial drugs. But what i f it became possible to administer an antimalarial drug together with a second drug capable of overcoming resistance to the first? A recent report from Samuel Martin and co-workers at The Walter Reed Army Institute of Research in Washington DC raises just such an intriguing possibility.     

Craniometric variation of the Ainu: an assessment of differential gene flow from northeast Asia into northern Japan, Hokkaido

In and after the latest Neolithic period in Japan (approximately B.P. 2,300 years), there were two distinct waves of migration from eastern Asia. One is well known as successive episodes in which indigenous inhabitants of main-island Japan were intruded on by new arrivals with advanced technology, and of a different genetic stock. Another migration of people and culture, identified as the Okhotsk culture, reached the northeastern part of Hokkaido. As opposed to main-island Japan, the morphological continuity from the Neolithic to recent inhabitants in Hokkaido (Ainu) is notable, so that the evidence of admixture easily could have escaped notice. In this study, the effects of gene flow from an outside source on the pattern of among-group variation of Hokkaido Ainu are examined by means of two models. One is the R-matrix model comparing observed and expected craniometric variation for estimating differential external gene flow into a region. The other is a simple simulation model that estimates admixture in a population with two parental populations. The two approaches give similar results. The results suggest the possibility of admixture between the migrants from Northeast Asia, the Okhotsk culture people, and the indigenous inhabitants in Hokkaido during the 5th to 12th centuries A.D., at least in northeastern Hokkaido. Such gene flow may have a certain degree of effect on the genetic structure of recent Ainu. The findings further suggest morphological heterogeneity in Northeast Asia during the Holocene that has relevance for understanding the morphological heterogeneity seen through time in the New World.     

Genetic structure of the global population of banana black leaf streak fungus, Mycosphaerella fijiensis

The genetic structure of Mycosphaerella fijiensis populations around the world was examined using DNA restriction fragment length polymorphism (RFLP) markers. Allele frequencies at 19 nuclear RFLP loci were estimated in a sample of 136 M. fijiensis isolates from five geographical populations representative of banana-producing areas (South-East Asia including the Philippines and Papua New Guinea, Africa, Latin America and Pacific Islands). Within each population, gametic disequilibrium tests between the 19 nuclear RFLP loci were mainly non significant ( P > 0.05), indicating that random sexual reproduction occurred in these populations. All M. fijiensis populations had a high level of genotypic and allelic diversity ( H , gene diversity: 0.25–0.59). The highest levels of gene diversity were found in the two South-East Asian populations ( H : 0.57 and 0.59). Most of the alleles (> 88%) detected in Africa, Latin America and Pacific Islands populations were also detected in South-East Asian populations. Furthermore, a high and significant ( P < 0.05) level of genetic differentiation was observed among M. fijiensis geographical populations (overall estimate of F_st : 0.32). These results were consistent with the hypothesis that M. fijiensis originated in South-East Asia and spread recently to other parts of the world. The level of allelic diversity in M. fijiensis populations from regions other than South-East Asia was drastically reduced, indicating founder effects. The data also suggested rare occurrence of migration of M. fijiensis between continents.     

Les principales étapes de l’occupation humaine en bordure de l’Himalaya occidentale

Lithic industries attest that Western Himalayas, Hindu Kush and Pamir as well as the sub-Himalayan belt that is the Siwalik range, were inhabited during the prehistoric times. However, in thin transition zone between plains and high mountains, distinction is to be kept between low-middle altitude regions and high altitude regions (above 2000 m). In the former regions, the first human occupation tenuously appears around 2 Ma. In the Middle Pleistocene, the Lower Palaeolithic industries belong to two technological facies, the Acheulian and the Early Soanian. In the North-Western Siwaliks, the Soanian occurs in plenty on the river terraces, which were all built after 0.4 Ma, and the Acheulian appears between 0.5 and 0.7 Ma. The Middle Palaeolithic is still rich in cobble tools and therefore named Late Soanian. The Upper Palaeolithic is missing, perhaps due to climatic factors and the Neolithic is characterised by polished axes/adzes, but actually many of the cobble tools usually considered as Early Soanian may well belong to the cobble tool technical tradition common in South-East Asia during the Late Pleistocene and Early Holocene. In the north of the mountain range, the entire Palaeolithic sequence yielded by the loess in Southern Tajikistan is characterised, right from the late Lower Pleistocene, by lithic industries mainly compose of flakes, sometimes with cobble tools. In the high altitude zones, prehistoric sites are unknown before the Holocene and therefore they are contemporaneous with the Neolithic but some technological facies display particular features. The question is to know whether the originality of the industries, observed at different periods of time, is linked to techno-cultural adaptations to particular environments or to the isolation of the mountain populations.     

Phylogeography of Aedes (Stegomyia) aegypti (L.) and Aedes (Stegomyia) albopictus (Skuse) (Diptera: Culicidae) based on mitochondrial DNA variations

Aedes (Stegomyia) aegypti (l.) and Aedes (Stegomyia) albopictus (Skuse) are the most important vectors of the dengue and yellow-fever viruses. Both took advantage of trade developments to spread throughout the tropics from their native area: A. aegypti originated from Africa and a. albopictus from South-East Asia. We investigated the relationships between A. aegypti and A. albopictus mosquitoes based on three mitochondrial-DNA genes (cytochrome b, cytochrome oxidase I and NADH dehydrogenase subunit 5). Little genetic variation was observed for a. albopictus, probably owing to the recent spreading of the species via human activities. For A. aegypti, most populations from South America were found to be genetically similar to populations from South-East Asia (Thailand and Vietnam), except for one sample from Boa Vista (northern Amazonia), which was more closely related to samples from Africa (Guinea and Ivory Coast). This suggests that African populations of A. aegypti introduced during the slave trade have persisted in Boa Vista, resisting eradication campaigns.     

Quand ils ne vivaient pas seulement de la chasse : preuves de domestication ancienne dans les gisements néolithiques d’Atxoste et de Mendandia (Pays Basque)

The combination of use wear analyses on lithic assemblages, palaeontological data and the presence of a quern-stone is considered direct and indirect proof of economic practices of production in the Neolithic sites of Atxoste and Mendandia. We also discuss the role that in this picture is suggested by a recent study on the genetics of the bovids from Mendandia. Both sites are rock-shelters seasonally occupied where the main economic vectors, but not the only ones, are hunting activities: they are integrated in a network created during the Mesolithic but still in use during the Early Neolithic until the mid sixth millennium cal BC when information on farming accumulates in the territory.     

A new light on the evolution and propagation of prehistoric grain pests: the world's oldest maize weevils found in Jomon Potteries, Japan

Three Sitophilus species (S. granarius L., S. oryzae L., and S. zeamais Mots.) are closely related based on DNA analysis of their endosymbionts. All are seed parasites of cereal crops and important economic pest species in stored grain. The Sitophilus species that currently exist, including these three species, are generally believed to be endemic to Asia's forested areas, suggesting that the first infestations of stored grain must have taken place near the forested mountains of southwestern Asia. Previous archaeological data and historical records suggest that the three species may have been diffused by the spread of Neolithic agriculture, but this hypothesis has only been established for granary weevils in European and southwestern Asian archaeological records. There was little archeological evidence for grain pests in East Asia before the discovery of maize weevil impressions in Jomon pottery in 2004 using the "impression replica" method. Our research on Jomon agriculture based on seed and insect impressions in pottery continued to seek additional evidence. In 2010, we discovered older weevil impressions in Jomon pottery dating to ca. 10 500 BP. These specimens are the oldest harmful insects in the world discovered at archaeological sites. Our results provide evidence of harmful insects living in the villages from the Earliest Jomon, when no cereals were cultivated. This suggests we must reconsider previous scenarios for the evolution and propagation of grain pest weevils, especially in eastern Asia. Although details of their biology or the foods they infested remain unclear, we hope future interdisciplinary collaborations among geneticists, entomologists, and archaeologists will provide the missing details.     

CHIKVPRO - a protein sequence annotation database for chikungunya virus

In the recent past, there has been a resurgence of interest in Chikungunya virus (CHIKV) attributed to massive outbreaks of Chikungunya fever in the South-East Asia Region. This has reflected in substantial increase in submission of CHIKV genome sequences to NCBI (National Center for Biotechnology Information) database. Hereby we submit a database "CHIKVPRO" containing structural and functional annotation of Chikungunya virus proteins (25 strains) submitted in the NCBI repository. The CHIKV genome encodes for 9 proteins:4 non-structural and 5 structural. The CHIKVPRO database aims to provide the virology community with a single accession authoritative resource for CHIKV proteome- with reference to physiochemical and molecular properties, proteolytic cleavage sites, hydrophobicity, transmembrane prediction, and classification into functional families using SVMProt and other Expasy tools. AVAILABILITY: The database is freely available at http://www.chikvpro.info/     

Ancient DNA Analysis of 8000 B.C. Near Eastern Farmers Supports an Early Neolithic Pioneer Maritime Colonization of Mainland Europe through Cyprus and the Aegean Islands

The genetic impact associated to the Neolithic spread in Europe has been widely debated over the last 20 years. Within this context, ancient DNA studies have provided a more reliable picture by directly analyzing the protagonist populations at different regions in Europe. However, the lack of available data from the original Near Eastern farmers has limited the achieved conclusions, preventing the formulation of continental models of Neolithic expansion. Here we address this issue by presenting mitochondrial DNA data of the original Near-Eastern Neolithic communities with the aim of providing the adequate background for the interpretation of Neolithic genetic data from European samples. Sixty-three skeletons from the Pre Pottery Neolithic B (PPNB) sites of Tell Halula, Tell Ramad and Dja''de El Mughara dating between 8,700–6,600 cal. B.C. were analyzed, and 15 validated mitochondrial DNA profiles were recovered. In order to estimate the demographic contribution of the first farmers to both Central European and Western Mediterranean Neolithic cultures, haplotype and haplogroup diversities in the PPNB sample were compared using phylogeographic and population genetic analyses to available ancient DNA data from human remains belonging to the Linearbandkeramik-Alföldi Vonaldiszes Kerámia and Cardial/Epicardial cultures. We also searched for possible signatures of the original Neolithic expansion over the modern Near Eastern and South European genetic pools, and tried to infer possible routes of expansion by comparing the obtained results to a database of 60 modern populations from both regions. Comparisons performed among the 3 ancient datasets allowed us to identify K and N-derived mitochondrial DNA haplogroups as potential markers of the Neolithic expansion, whose genetic signature would have reached both the Iberian coasts and the Central European plain. Moreover, the observed genetic affinities between the PPNB samples and the modern populations of Cyprus and Crete seem to suggest that the Neolithic was first introduced into Europe through pioneer seafaring colonization.