Phylogenetic position of the enigmatic myxomycete genus Kelleromyxa revealed by SSU rDNA sequences

The coprophilous myxomycete Kelleromyxa fimicola (Dearn. & Bisby) Eliasson was first described in 1929 as Licea fimicola Dearn. & Bisby. Based on the superficial resemblance of its sporocarps to those of Licea biforis, the species was placed within the Liceales, an order assigned by molecular phylogenies to the bright-spored clade of myxomycetes. However, detailed studies of the morphology and life cycle of K. fimicola revealed several characters of the dark-spored order Physarales. To elucidate the systematic position of Kelleromyxa, we obtained three partial and one complete sequence of the SSU rDNA, which demonstrated a clear relationship of K. fimicola to the order Physarales. However, the obtained sequences are not closely related to any of the two known families of Physarales, supporting the erection of a monotypic family for this species. Along with morphological observations, our data support the exclusion of K. fimicola from the order Liceales and placement among the order Physarales within the dark-spored clade of myxomycetes.     

Chromosomal variation and evolution in Lycoris (Amaryllidaceae) I. Intraspecific variation in the karyotype of Lycoris chinensis Traub

In 188 bulbs from five populations of Lycoris chinensis from Anhui province, China, several chromosomal variations have been discovered. Although their frequencies are low, some rearranged chromosomes which are aberrant have been found. The aberrants are: (1) small metacentrics (m′); (2) submetacentrics (sm); (3) subtelocentrics (st); (4) acrocentrics (t); and (5) satellite chromosomes (SAT). All can be easily suspected as being derived from telocentric chromosomes (T type chromosomes). Some individuals having one or more B chromosomes have been found, and intrapopulational variation of B chromosomes in number has also been observed. Because of having B chromosome, L. chinensis has some different chromosome complement numbers: 2n?=?16, 2n?=?16?+?1B, 2n?=?16?+?2B, 2n?=?16?+?3B, and 2n?=?16?+?5B. In addition, a new triploid karyotype composed of 3n?=?24?=?9m?+?11t(2SAT)?+?4T chromosomes has been found. Vegetative propagation is an efficient means of perpetuating the aberrant chromosomes and the triploids.     

Karyotype variability in species of the genus Zephyranthes Herb. (Amaryllidaceae�CHippeastreae)

In this work, the cytotaxonomic implications of the chromosomal characterization of cultivated and native Zephyranthes species described in northeastern Brazil were studied. All individuals had karyotype formed by a set of metacentric chromosomes, in addition to submetacentric and acrocentric chromosomes. In Zephyranthes robusta, 2n?=?12 was observed and karyotype with formula?4M?+?2SM in somatic cells, representing the most symmetric karyotype among the investigated species. Z.?sylvatica showed three different chromosome complement numbers: 2n?=?12 with formula?1M?+?5SM, 2n?=?12?+?1B with 1M?+?5SM?+?(1B), and 2n?=?18 formed by cracks. The cultivated species Z.?rosea Lindl. presented 2n?=?24 with 4M?+?7SM?+?1A, however Z.?grandiflora Lindl. showed the same chromosome number with 2M?+?5SM?+?5A. Zephyranthes aff. rosea Lindl. presented 2n?=?25 with one small metacentric forming a crack in the fourth metacentric pair. Z.?brachyandra has 2n?=?24?+?(1B) and formula?4M?+?3SM?+?5A?+?(1B). Z.?candida Herb. presented 2n?=?38 and karyotype formula?9M?+?10SM. In Habranthus itaobinus numerical variation was observed, with the majority of populations showing a chromosome complement composed of 2n?=?44?+?1B with 5M?+?12SM?+?5A?+?(1B), or 2n?=?44?+?3B in a single population. Mechanisms involved in the formation of these karyotypes from chromosomal imbalance data are discussed. Taken together, data from this study only partially confirm previous counts for epithets and further enhance the cytological variability data previously reported for the genus.     

Fast Diploidization in Close Mesopolyploid Relatives of Arabidopsis

Mesopolyploid whole-genome duplication (WGD) was revealed in the ancestry of Australian Brassicaceae species with diploid-like chromosome numbers (n = 4 to 6). Multicolor comparative chromosome painting was used to reconstruct complete cytogenetic maps of the cryptic ancient polyploids. Cytogenetic analysis showed that the karyotype of the Australian Camelineae species descended from the eight ancestral chromosomes (n = 8) through allopolyploid WGD followed by the extensive reduction of chromosome number. Nuclear and maternal gene phylogenies corroborated the hybrid origin of the mesotetraploid ancestor and suggest that the hybridization event occurred ~6 to 9 million years ago. The four, five, and six fusion chromosome pairs of the analyzed close relatives of Arabidopsis thaliana represent complex mosaics of duplicated ancestral genomic blocks reshuffled by numerous chromosome rearrangements. Unequal reciprocal translocations with or without preceeding pericentric inversions and purported end-to-end chromosome fusions accompanied by inactivation and/or loss of centromeres are hypothesized to be the main pathways for the observed chromosome number reduction. Our results underline the significance of multiple rounds of WGD in the angiosperm genome evolution and demonstrate that chromosome number per se is not a reliable indicator of ploidy level.     

鼎湖山自然保护区黏菌的物种组成和多样性

为了揭示鼎湖山自然保护区黏菌的物种组成及物种多样性在不同生境的异同,该研究选择6个不同海拔高度的样地,从中收集地面基物和树皮基物进行湿室培养,通过物种鉴定和发生数量统计分析物种的组成和多样性。结果表明:共计获得6目8科18属49种黏菌,其中绒泡菌目(Physarales)最多(17种),其次为团毛菌目15种、发网菌目(Stemonitales)11种、无丝菌目(Lieeales)4种、鹅绒菌目(Ceratiomyxales)和刺轴菌目(Eehinosteliales)分别各1种。主要优势种为灰团网菌(Arcyria cinerea)(RA=27.03%)和垫形双皮菌(Diderma effusum)(RA=21.14%)。随着海拔的升高,黏菌物种多样性逐渐降低,Shannon-Wiener多样性指数最低值出现在海拔300 m处,为1.66±0.12;而其优势集中性指数最高,为0.25±0.05。两个样地的海拔高度相距越大,共有的物种数越少相似性指数越低。雨季共获得黏菌33种,旱季共获得黏菌40种,共有种为22种,相似性系数为60.27%,旱季基物上发生的黏菌Shannon-Wiener多样性指数显著高于雨季。地面基物上的黏菌物种数为39种,高于树皮基物的26种,且两者的Shannon-Wiener多样性指数具有显著性差异,表明黏菌对地面基物的偏好性大于树皮基物。     

More sex chromosomes than autosomes in the Amazonian frog <Emphasis Type="Italic">Leptodactylus pentadactylus</Emphasis>

Heteromorphic sex chromosomes are common in eukaryotes and largely ubiquitous in birds and mammals. The largest number of multiple sex chromosomes in vertebrates known today is found in the monotreme platypus (Ornithorhynchus anatinus, 2n?=?52) which exhibits precisely 10 sex chromosomes. Interestingly, fish, amphibians, and reptiles have sex determination mechanisms that do or do not involve morphologically differentiated sex chromosomes. Relatively few amphibian species carry heteromorphic sex chromosomes, and when present, they are frequently represented by only one pair, either XX:XY or ZZ:ZW types. Here, in contrast, with several evidences, from classical and molecular cytogenetic analyses, we found 12 sex chromosomes in a Brazilian population of the smoky jungle frog, designated as Leptodactylus pentadactylus Laurenti, 1768 (Leptodactylinae), which has a karyotype with 2n?=?22 chromosomes. Males exhibited an astonishing stable ring-shaped meiotic chain composed of six X and six Y chromosomes. The number of sex chromosomes is larger than the number of autosomes found, and these data represent the largest number of multiple sex chromosomes ever found among vertebrate species. Additionally, sequence and karyotype variation data suggest that this species may represent a complex of species, in which the chromosomal rearrangements may possibly have played an important role in the evolution process.     

Chromosome numbers in the genus Mimosa L.: cytotaxonomic and evolutionary implications

Chromosome numbers were determined for 125 accessions of 92 taxa of Mimosa from all five of Barneby??s (Mem New York Bot Gard 65:1?C835, 1991) taxonomic sections. For 69 species, 1 subspecies and 8 varieties, chromosome numbers are presented for the first time, for 6 species and 1 variety previously published data have been confirmed and for 3 species and 2 varieties different numbers were found. Results show that 74% of the accessions were diploid (2n?=?2x?=?26) and 26% polyploid, these mostly tetraploid (2n?=?4x?=?52) but with two triploid (2n?=?3x?=?39). These results double the number of Mimosa species for which the chromosome count is known from less than 10% previously reported to more than 20%, representing an important advance in the cytotaxonomy of this legume genus. These results together with literature data show that ca. 78% of Mimosa species are diploid. Polyploids are present in most of the taxonomic sections and in different lineages across the genus. No particular chromosome number is restricted to a given section or lineage. A possible relation between geography, species distribution, polyploidy and invasiveness was detected, however, further studies based on more accessions, especially from higher latitudes, are required before firm conclusions can be drawn.     

Chromosome numbers of the Australian Cymodoceaceae

The somatic chromosome numbers of the eleven Australian seagrass species belonging to five genera in the Family Cymodoceaceae were determined. The chromosome numbers in Amphibolis and Thalassodendron are reported for the first time. Cymodocea and Halodule species have the following chromosome numbers: Cymodocea angustata Ostenf., 2n = 14, 28; C. rotundata Ehrenb. & Hempr. ex Asch., 2n = 14; C. serrulata (R. Br.) Asch. & Magnus, 2n = 14, 28; Halodule pinifolia (Miki) den Hartog, 2n = 32; H. uninervis (Forsk.) Asch., 2n = 32; H. tridentata (Steinh.) Endl. ex Unger, 2n = 14. Halodule has the highest chromosome numbers among the seagrasses and they are the largest in sizes with a distinct bimodal type in the family. Syringodium isoetifolium (Asch.) Dandy has 2n = 20. Both endemic Amphibolis antarctica (Labill.) Sonder ex Asch. and A. griffithii (J. Black) den Hartog have 2n = ca. 36 and have the smallest chromosomes in the family appearing as small dots. Thalassodendron pachyrhizum den Hartog has 2n = 28. Chromosome numbers appear to be identical or closely related among different species in the same genus but they vary in the five genera in the Cymodoceaceae suggesting that these five genera may have evolved independently in the past.     

Chromosomal rearrangements as the source of variation in the number of chromosomes in Pseudis (Amphibia, Anura)

A cytogenetic study of Pseudis specimens from three localities in Rio Grande do Sul State, the southernmost Brazilian, was performed to identify karyotypic characteristics that could account for differences in vocalization pattern and body size. Individuals from around Tainhas were compared to those of São Jerônimo and Eldorado do Sul. Specimens from these latter two localities were identified as Pseudis minuta, while those from the former were classified as Pseudis sp. (aff. minuta). The populations from São Jerônimo and Eldorado do Sul had 2n?=?24 chromosomes, classified as metacentric, submetacentric and subtelocentric. The population from Tainhas had 2n?=?28 chromosomes, with four pairs of telocentric chromosomes. Modelling of these 28 chromosomes and testing for fusion in the centromeric/telomeric regions yielded a karyotype of 2n?=?24 chromosomes, similar to that of the other populations. The similarity was reinforced by the location of the NORs and heterochromatin. The Tainhas population showed an increase in heterochromatin, as seen by the presence of additional C-bands, especially in the telocentric chromosomes. These data suggest that the two karyotypes described in this work had a common ancestry. There is evidence that the differentiation of these karyotypes may have occurred by chromosome fission and heterochromatin addition. Based on the present karyotype (2n?=?28) and on morphological and vocalization studies by other researchers, we conclude that the Tainhas population may represent a new species.     

A new insight into Serjania Mill. (Sapindaceae, Paullinieae) infrageneric classification: a cytogenetic approach

Serjania (Sapindaceae, Paullinieae) comprises about 230 species, and currently two infrageneric classifications have been proposed but both are difficult to apply. This work tested which infrageneric classification fitted better in relation to cytogenetic traits added to the main morphological features used by the authors of the subgenus arrangements to gain an insight into the evolutionary karyotype relationships. In order to test the relationship between karyotypes and the systematics of this genus, the karyotypes of five species of Serjania belonging to five different sections (sensu Radlkofer) were described. Known karyological information on 26 species was used to complement the results. With these data, a cluster analysis was set up to test which infrageneric classification fitted better. In addition, a principal component analysis (PCA) was performed to examine the relevance of the traits in the subgenus classification. All the karyotypes analyzed (including new as well as previous records) had 2n?=?24 chromosomes, and the karyotypes were asymmetrical: submetacentric and metacentric chromosomes were common, whereas telocentric chromosomes were rare. The PCA revealed seven principal components, the first two explained 52?% of the total variation, and the last ones were related to all the karyotypic features studied. The phenogram obtained reflected a scarce fitting into both infrageneric classifications, with only 3 sections of the 12 proposed by Radlkofer and two of the six sections proposed by Acevedo-Rodríguez being represented. Finally, regarding karyotype evolution, the constancy of chromosome number and the variation in the length of the complement suggest that structural chromosome changes would have played a leading role.     

Comparative Chromosome Painting in Mammals: Human and the Indian Muntjac (Muntiacus muntjak vaginalis)

We have used human chromosome-specific painting probes forin situhybridization on Indian muntjac (Muntiacus muntjak vaginalis,2n= 6, 7) metaphase chromosomes to identify the homologous chromosome regions of the entire human chromosome set. Chromosome rearrangements that have been involved in the karyotype evolution of these two species belonging to different mammalian orders were reconstructed based on hybridization patterns. Although, compared to human chromosomes, the karyotype of the Indian muntjac seems to be highly rearranged, we could identify a limited number of highly conserved homologous chromosome regions for each of the human chromosome-specific probes. We identified 48 homologous autosomal chromosome segments, which is in the range of the numbers found in other artiodactyls and carnivores recently analyzed by chromosome painting. The results demonstrate that the reshuffling of the muntjac karyotype is mostly due to fusions of huge blocks of entire chromosomes. This is in accordance with previous chromosome painting analyses between various Muntjac species and contrasts the findings for some other mammals (e.g., gibbons, mice) that show exceptional chromosome reshuffling due to multiple reciprocal translocation events.     

Coreopsis nuecensis (Compositae) and a related new species from southern Texas

An aneuploid chromosome series ofn = 6, 7, 8, 9, and 10 inCoreopsis nuecensis Heller was analyzed for morphological, distributional, and genetic correlations with the chromosome number classes. The results show that two sets of basic chromosome numbers occur within what has been treated asC. nuecensis: n = 6, 7 andn = 9, 10. Then = 7 class frequently carries a pair of B chromosomes, forming then = 8 class. The base chromosome numbers are correlated with some minor but consistent morphological differences, with distributional differences, and with strong sterility barriers in the F₁ hybrids. It is proposed that then = 9, 10 segment be recognized as a new species,Coreopsis nuecensoides.     

Combining FISH and model-based predictions to understand chromosome evolution in Typhonium (Araceae)

Background and Aims

Since the advent of molecular phylogenetics, numerous attempts have been made to infer the evolutionary trajectories of chromosome numbers on DNA phylogenies. Ideally, such inferences should be evaluated against cytogenetic data. Towards this goal, we carried out phylogenetic modelling of chromosome number change and fluorescence in situ hybridization (FISH) in a medium sized genus of Araceae to elucidate if data from chromosomal markers would support maximum likelihood-inferred changes in chromosome numbers among close relatives. Typhonium, the focal genus, includes species with 2n = 65 and 2n = 8, the lowest known count in the family.

Methods

A phylogeny from nuclear and plastid sequences (96 taxa, 4252 nucleotides) and counts for all included species (15 of them first reported here) were used to model chromosome number evolution, assuming discrete events, such as polyploidization and descending or ascending dysploidy, occurring at different rates. FISH with three probes (5S rDNA, 45S rDNA and Arabidopsis-like telomeres) was performed on ten species with 2n = 8 to 2n = 24.

Key Results

The best-fitting models assume numerous past chromosome number reductions. Of the species analysed with FISH, the two with the lowest chromosome numbers contained interstitial telomeric signals (Its), which together with the phylogeny and modelling indicates decreasing dysploidy as an explanation for the low numbers. A model-inferred polyploidization in another species is matched by an increase in rDNA sites.

Conclusions

The combination of a densely sampled phylogeny, ancestral state modelling and FISH revealed that the species with n = 4 is highly derived, with the FISH data pointing to a Robertsonian fusion-like chromosome rearrangement in the ancestor of this species.     

Polyploidy, B chromosomes, and heterochromatin characterization of Mimosa caesalpiniifolia Benth. (Fabaceae-Mimosoideae)

Eight populations of Mimosa caesalpiniifolia Benth. were investigated using a cytogenetic approach. Here, we describe for the first time details of the karyotype including chromosome morphology, physical mapping of chromomycin A3 (CMA) 4′,6-diamidino-2-phenylindole (DAPI) and silver staining of nucleolar organizer regions (Ag-NOR banding), as well as 45S rDNA sites. All populations studied showed karyotypes with 2n?=?2x?=?26 small metacentric and submetacentric chromosomes, although some individuals exhibited 2n?=?4x?=?52 chromosomes. Moreover, we observed putative additional B chromosomes in some populations. The CMA banding and fluorescent in situ hybridization techniques revealed NOR heteromorphism on the unique pair containing 45 rDNA site (chromosome 12) while the Ag-NOR banding indicated NORs on both cytotypes. Up to two and four nucleoli were observed, respectively, on individuals with 2n?=?2x?=?26 and 2n?=?4x?=?52 chromosomes and the differences in nucleolar size seems to be directly related to NOR heteromorphism in some individuals. The data present new and important information to understand karyotypic evolution of Mimosa and Fabaceae.     

Down,then up: non-parallel genome size changes and a descending chromosome series in a recent radiation of the Australian allotetraploid plant species,Nicotiana section Suaveolentes (Solanaceae)

Background and AimsThe extent to which genome size and chromosome numbers evolve in concert is little understood, particularly after polyploidy (whole-genome duplication), when a genome returns to a diploid-like condition (diploidization). We study this phenomenon in 46 species of allotetraploid Nicotiana section Suaveolentes (Solanaceae), which formed <6 million years ago and radiated in the arid centre of Australia.MethodsWe analysed newly assessed genome sizes and chromosome numbers within the context of a restriction site-associated nuclear DNA (RADseq) phylogenetic framework.Key ResultsRADseq generated a well-supported phylogenetic tree, in which multiple accessions from each species formed unique genetic clusters. Chromosome numbers and genome sizes vary from n = 2x = 15 to 24 and 2.7 to 5.8 pg/1C nucleus, respectively. Decreases in both genome size and chromosome number occur, although neither consistently nor in parallel. Species with the lowest chromosome numbers (n = 15–18) do not possess the smallest genome sizes and, although N. heterantha has retained the ancestral chromosome complement, n = 2x = 24, it nonetheless has the smallest genome size, even smaller than that of the modern representatives of ancestral diploids.ConclusionsThe results indicate that decreases in genome size and chromosome number occur in parallel down to a chromosome number threshold, n = 20, below which genome size increases, a phenomenon potentially explained by decreasing rates of recombination over fewer chromosomes. We hypothesize that, more generally in plants, major decreases in genome size post-polyploidization take place while chromosome numbers are still high because in these stages elimination of retrotransposons and other repetitive elements is more efficient. Once such major genome size change has been accomplished, then dysploid chromosome reductions take place to reorganize these smaller genomes, producing species with small genomes and low chromosome numbers such as those observed in many annual angiosperms, including Arabidopsis.     

Karyological features and banding patterns in Arachis species belonging to the Heteranthae section

The section Heteranthae of Arachis is endemic to Brazil, occurring mainly in the semi-arid northeastern region. The section is considered derived within the genus and includes only annual herbs. Most previous cytological evaluations were restricted to chromosome numbers and morphology. The present approach comprised karyomorphological evaluation in 10 accessions from five species of this section, including standard staining and fluorochrome banding [chromomycin A3 (CMA)/4′,6-diamidino-2-phenylindole (DAPI)]. All accessions presented diploid chromosome numbers (2n = 20) with a prevalence of metacentric to submetacentric chromosome morphology. Arachis dardani, Arachis pusilla, and Arachis interrupta presented karyotypic formula 18m + 4sm and satellite type 2, while Arachis sylvestris and Arachis giacomettii presented 16m + 4sm and satellite type 10. Despite the conserved morphological features, higher diversity was detected in terms of size and number of GC-rich (CMA⁺) heterochromatic blocks among the species; however, all of them were located in the pericentromeric regions. The species A. pusilla presented the highest number of GC-rich blocks, present in all chromosomes of the complement. Based on the data obtained and considering literature data, we suggest that A. dardani and A. interrupta occupy a basal position in the group due to their moderate asymmetry and satellite type. At least in A. pusilla, the constitutive heterochromatin seems to have suffered recent modifications of its constitution, in contrast to other species that present pericentromeric CMA⁺ blocks in all chromosomes. A. giacomettii and A. sylvestris are closely related to each other and also similar to the previously studied Arachis seridoensis, revealing two clear-cut subgroups within the section from the karyological point of view.     

CHROMOSOME NUMBERS IN NORTH AMERICAN LORANTHACEAE: (ARCEUTHOBIUM,PHORADENDRON, PSITTACANTHUS,STRUTHANTHUS)

Chromosome numbers are reported from 67 populations of 36 taxa, mostly in Phoradendron. The basic number is 14 in Phoradendron and probably also in Arceuthobium. The 4 species of Struthanthus for which chromosome numbers are recorded suggest that the basic number is 8. Numbers of n = 8 and n = 10 have been reported for Psittacanthus. In Phoradendron the 22 taxa examined are all diploid, although 1 instance of polyploidy was discovered. Objects interpreted as supernumerary chromosomes were discovered in a number of species of Phoradendron; no evidence of sex chromosomes previously reported in Phoradendron was observed. The Loranthaceae have chromosomes comparable in size to the largest in the plant kingdom.