芘高效降解菌的分离鉴定及其降解特性的研究

以芘为惟一碳源.采用寓集培养方法,从沈抚灌区石油污染土壤中分离得到一株芘降解菌B05.根据形态学观察、生理牛化鉴定和16S rDNA序列分析结果.将菌株B05鉴定为Aminobacter ciceronei.在芘初始浓度为1mg/L的液体无机盐培养基中,培养10d,菌株B05对芘的降解率为51%;在芘初始浓度为1mg/kg的土壤培养基条件下,培养30d,菌株B05对芘的降解率可达51%;在芘初始浓度为50mg/L的乙醇液体培养基条件下,培养5d,菌株B05对芘的降解率可达25.9%.对菌株培养条件进行优化,经SlideWrite统计软件拟合,菌株B05在牛肉膏蛋白胨液体培养基上的最适生长pH值为7.3,最适生长温度为32.5℃,最适装液量为25.4mL(150mL三角瓶).     

芘高效降解菌的分离鉴定及其降解特性

以芘为唯一碳源,采用富集培养方法,从沈抚灌区石油污染土壤中分离得到一株芘降解菌ZQ5.根据形态学观察、生理生化鉴定和16S rDNA序列分析结果,将菌株ZQ₅鉴定为寡养单胞菌属（Stenotrophomonas sp.）.采用摇瓶振荡培养方法研究该菌株降解芘的特性及培养条件对降解效能的影响.结果表明：菌株ZQ₅在30 ℃振荡培养10 d后,对100 mg·L^-1的芘降解率为91.2%,加入水杨酸（100 mg·L^-1）作为共代谢底物可以提高菌株ZQ₅对芘的降解率.当培养基pH为7～8、盐浓度不高于2%时,有利于菌株ZQ₅降解效能的发挥.     

两株具有芘降解功能的植物内生细菌的分离筛选及其特性

从植物体内筛选具有多环芳烃(PAHs)降解功能的内生细菌并定殖于植物体,有望有效地去除植物体内PAHs,从而减低植物污染风险。采用富集培养法,从长期受PAHs污染的植物体内分离筛选出2株能以芘为唯一碳源和能源生长的内生细菌BJ03和BJ05,经形态观察、生理生化特性及16S rDNA序列同源性分析,将2株菌分别鉴定为不动杆菌属(Acinetobacter sp.)和库克氏菌属(Kocuria sp.)。并研究了2株内生细菌对芘的降解能力及环境条件对其降解芘的影响。结果表明,菌株BJ03和BJ05在以浓度为50 mg/L的芘为唯一碳源生长时,于30℃、150 r/min摇床培养15 d后,对芘的降解率分别为65.0%和53.3%。2株菌在pH值(6.0—9.0)、温度(25—40℃)和盐浓度(NaCl含量为0—15 g/L)条件下生长良好,且皆为好氧生长,通气量越大,菌株生长越旺盛,对芘的降解能力越强。添加C、N源可有效促进菌株BJ03和BJ05的生长,加速其对芘的降解速率。当外加C源为蔗糖、N源为酵母膏时,2株菌在30℃摇床培养4 d后,对芘的降解率分别高达71.1%和55.3%。2株菌的细胞表面疏水率最大分别为93.7%和43.9%,对四环素和利福平敏感,而对其它多种抗生素具有较强的抗性。     

底泥中芘高效降解菌株的富集分离及特性研究

从辽河流域浑河沈阳段采集底泥样品,利用吸附性载体,以芘为唯一碳源,筛选到一株芘高效降解菌F8,根据形态。生理生化特性及测序结果鉴定该菌为产碱杆菌(Alcaligenes sp.)。对菌株F8降解率进行测定,结果表明,菌株F8在32℃振荡培养条件下,7d后对50 mg·L~(-1)的芘降解率为62.75%,芘的降解与细菌浓度的增长呈正相关关系?通过对其培养条件优化,确定其生长的最适温度和pH分别为36℃和6.5。对菌株F8在重金属离子胁迫下的生长研究发现,Cd~(2+)对菌株F8有毒性;Zn~(2+)对菌株有一定的抑制作用;Cu~(2+)对菌株生长影响很小。研究了植物-微生物联合修复作用,结果显示水稻促进了菌株F8对芘的降解,使降解率增加了11.85%。     

盐碱土壤PAHs 降解菌的筛选鉴定及其降解特性

采用富集培养的方法,从天津大港油田PAHs污染盐碱化土壤中分离出一株能以菲、芘为唯一碳源和能源的优势菌TJB5。经形态观察和16S rDNA序列分析结果表明,该菌株为成团泛菌(Pantoea agglomerans)。采用液体培养的方法,研究了pH、盐度、菲芘的初始浓度对TJB5菌株降解菲芘效果的影响,确定了最佳降解条件。结果表明,该菌对菲、芘的降解具有较广泛的pH、盐度范围和良好的降解效果。在菲、芘浓度分别为50 mg/L、pH 6.8-9.5、盐度2%-3%、温度30°C条件下,接种15 d后菲降解率在93.3%以上,芘降解率在20%以上。     

高效芘降解菌N12的分离鉴定与降解特性

以芘为目标降解物,利用选择性富集培养方法,从沈抚灌区污染土壤中分离到一株高效芘降解菌N12,经生理生化试验和16S rDNA测序分析,该菌被鉴定为分枝杆菌属（Mycobacterium sp.）.菌株N12能以菲、苊、芴和芘为唯一碳源和能源生长,不能以蒽、萘和苯并芘为唯一碳源和能源生长.在菲和芘共同存在的情况下菌株N12可降解苯并芘,9 d内对苯并芘降解率可达79.0%.摇瓶降解试验表明,菌株N12可在7 d内将100 mg·L^-1的芘降解94.4%,14 d内将其完全降解;可将600 mg·L^-1的芘在7 d内降解56.1%,14 d内降解95.5%.添加葡萄糖可促进N12对芘的降解.菌株N12是一株优良的多环芳烃降解菌,可作为多环芳烃污染土壤生物修复的菌种资源.     

γ-聚谷氨酸高产菌株筛选及发酵条件优化

γ聚谷氨酸是一种生物可降解的高分子材料,可应用于多种领域,因此受到普遍重视。报道了以11株枯草芽孢杆菌菌株为培养菌株,用3种谷氨酸钠含量不同的培养基进行筛选获得1株γ聚谷氨酸高产菌株;再以该菌株为研究对象进行碳源、氮源、谷氨酸钠浓度、初始pH、接种量、通气量等发酵条件的优化实验,结果表明最佳发酵条件为:250ml三角烧瓶装液40ml,接种体积分数5%,麦芽糖50g/L,酵母膏10g/L,谷氨酸钠30g/L,NaCl10g/L,KH₂PO₄5g/L,MgSO₄·7H₂O0.5g/L,初始pH6.0,发酵60h,此时γ聚谷氨酸产量最高,达到30.26g/L,比国外报道的20g/L的产量有显著提高。纯化后产物经红外光谱及核磁共振检测,鉴定为γ聚谷氨酸。     

一株芘降解菌的分离鉴定及其降解效果

以芘为唯一碳源,采用平板升华法,从徐州市卧牛山焦化厂周围污染土壤中分离得到一株芘降解菌SE12.经形态观察、生理生化试验和16S rDNA鉴定,该菌株属于分枝杆菌属(Mycobacterium sp.)菌株,与快速生长型非致病性南非分枝杆菌(M.austroa fricanum ATCC33464)的同源性达到98%.SE12降解芘的最适pH和温度为pH9和30℃.当土壤芘初始含量为100和200mg.kg-1,SE12接种量为107CFU.g-1时,30℃培养28d后土壤芘降解率分别达到97%和99%.利用双加氧酶基因的同源序列引物nidAF/nidAR和nidBF/nidBR进行扩增,得出了该菌株编码双加氧酶大亚基和小亚基的基因片段,它们与已知降解芘的分枝杆菌的双加氧酶基因具有高度同源性.     

一株高效羽毛降解菌的筛选与鉴定

将废弃羽毛制成氨基酸肥,从长期堆积腐烂羽毛的土壤中筛选出2株能降解羽毛的菌株。结果发现,其中X-Y4菌株降解羽毛的效率最高,经16S rDNA和生理生化分析鉴定为产吲哚金黄杆菌(Chryseobacterium indologenes)。以羽毛为唯一碳源和氮源,研究发酵条件对该菌株降解羽毛产可溶性蛋白的影响,通过单因素实验,确定了该菌株最优发酵条件：羽毛填量10 g/L、转速200 r/min、初始pH 9.0、接种量2%、温度35℃,在此条件下,可溶性蛋白产量为(173.27±2.95)μg/mL。将该羽毛降解菌制得的氨基酸肥分别通过叶面喷洒和灌根施加于黑叶葵扇白菜盆栽中,并对其基本指标进行测定分析。结果表明：0.2 L/m²灌根施加,对黑叶葵扇白菜的促生效果最明显,其鲜质量增加了63.48%。     

聚乙烯醇高效降解菌的筛选及降解特性研究

以聚乙烯醇为唯一碳源从环境中筛选获得了高效降解聚乙烯醇的微生物菌株XT11, 初步鉴定为假单胞菌属(Pseudomonas sp.)。对菌株Pseudomonas XT11的生长过程及PVA降解过程进行了研究, 发现该菌株在54 h内可将1 g/L的聚乙烯醇(PVA)降解。同时研究了温度、pH值及酵母膏浓度对该菌株降解PVA的影响, 结果表明其最适温度、pH值和酵母膏浓度分别为30℃、7.0和0.5 g/L。研究了PVA浓度对PVA降解率的影响, 发现随着PVA浓度的增大, PVA的降解率降低。     

Pyrene and benzo(a)pyrene Metabolism by an Aspergillus Terreus Strain Isolated from a Polycylic Aromatic Hydrocarbons Polluted Soil

A strain of Aspergillus terreus was isolated from a polycyclic aromatic hydrocarbons (PAHs) polluted soil. The metabolism of pyrene and benzo(a)pyrene by this fungus was investigated in liquid submerged culture added of 50 and 25 ppm respectively of each compound. Depletion of pyrene and Benzo(a)pyrene was evident during the first stages of growth and was 60% and 27.5% respectively of the added amount after nine days of culture. Solvent extracts of the fermentation broth and mycelium were analysed for presence of metabolites by HPLC-MS technique. Under the present cultural conditions pyrene was mainly metabolised to pyrenylsulfate similarly to benzo(a)pyrene that led to benzo(a)pyrenylsulfate. The structure of 1-pyrenilsulfate was determined after purification of extracts and H-NMR analysis. The result show that the isolated A. terreus strain metabolises PAHs by reaction similar to those previously reported for non lignolinolytic fungi with a mechanism that suggests the hydroxylation by a cytochrome P-450 monooxygenase followed by conjugation with sulfate ion.     

芘降解质粒提取方法的研究

采用碱裂解法、化学改良方法、CTAB法、酚氯法等4种方法提取从泉州红树林沉积物中筛选出多环芳烃降解菌群YL的质粒,并分别转化至大肠杆菌感受态细胞,然后采用富集筛选的手段,最终确立最佳方案得到一组质粒转化菌群.该转化菌群可以利用芘作为其生长的惟一碳源和能源,并能在21 d内将50 mg·L-1的芘降解85.69%.而受体菌E.coli DH5α的芘降解率仅为2.006%.由此可以证明,降解质粒已成功转化进宿主细胞,并发挥降解作用.YL的质粒含有降解芘的基因.     

Mycobacterium Diversity and Pyrene Mineralization in Petroleum-Contaminated Soils

Degradative strains of fast-growing Mycobacterium spp. are commonly isolated from polycyclic aromatic hydrocarbon (PAH)-contaminated soils. Little is known, however, about the ecology and diversity of indigenous populations of these fast-growing mycobacteria in contaminated environments. In the present study 16S rRNA genes were PCR amplified using Mycobacterium-specific primers and separated by temperature gradient gel electrophoresis (TGGE), and prominent bands were sequenced to compare the indigenous Mycobacterium community structures in four pairs of soil samples taken from heavily contaminated and less contaminated areas at four different sites. Overall, TGGE profiles obtained from heavily contaminated soils were less diverse than those from less contaminated soils. This decrease in diversity may be due to toxicity, since significantly fewer Mycobacterium phylotypes were detected in soils determined to be toxic by the Microtox assay than in nontoxic soils. Sequencing and phylogenetic analysis of prominent TGGE bands indicated that novel strains dominated the soil Mycobacterium community. Mineralization studies using [¹⁴C]pyrene added to four petroleum-contaminated soils, with and without the addition of the known pyrene degrader Mycobacterium sp. strain RJGII-135, indicated that inoculation increased the level of degradation in three of the four soils. Mineralization results obtained from a sterilized soil inoculated with strain RJGII-135 suggested that competition with indigenous microorganisms may be a significant factor affecting biodegradation of PAHs. Pyrene-amended soils, with and without inoculation with strain RJGII-135, experienced both increases and decreases in the population sizes of the inoculated strain and indigenous Mycobacterium populations during incubation.     

Pyrene and Phenanthrene Influence on Soil Microbial Populations

Two studies were conducted to evaluate microbial populations in polycyclic aromatic hydrocarbon-contaminated soil. Captina silt loam was freshly exposed to (1) 0 or 2000?mg pyrene/kg and sampled after 10- and 61-wk incubation and (2) 0 or 505?mg pyrene + 445?mg phenanthrene/kg and sampled after a 21-wk incubation. Microbial numbers were determined by plate-count techniques. Isolated bacteria, selected degraders, and wholesoil extracts were analyzed by fatty acid methyl ester analysis (FAME). In the pyrene experiment, pyrene did not affect total bacterial or fungal numbers, but pyrene degraders increased from undetectable levels to 7.09 log₁₀ degraders/g in the contaminated soil. The FAME analysis of bacterial isolates detected no pyrene effect, but wholesoil FAME indicated an increase in the contaminated soil of a fatty acid characteristic of protozoa and a major fatty acid detected in isolated degraders. In the pyrene + phenanthrene experiment, the contaminants had no impact on bacterial, fungal, or actinomycete numbers but increased degrader numbers. No effect of pyrene + phenanthrene was detected by isolate FAME, but whole-soil FAME indicated an effect similar to that in the pyrene experiment. The results indicate that pyrene, although not impacting microbial numbers, may have altered the soil microbial composition and that Captina silt loam can develop an effective degrader population under tested conditions.     

Pyrene and Phenanthrene Influence on Soil Microbial Populations

Two studies were conducted to evaluate microbial populations in polycyclic aromatic hydrocarbon-contaminated soil. Captina silt loam was freshly exposed to (1) 0 or 2000 mg pyrene/kg and sampled after 10- and 61-wk incubation and (2) 0 or 505 mg pyrene + 445 mg phenanthrene/kg and sampled after a 21-wk incubation. Microbial numbers were determined by plate-count techniques. Isolated bacteria, selected degraders, and wholesoil extracts were analyzed by fatty acid methyl ester analysis (FAME). In the pyrene experiment, pyrene did not affect total bacterial or fungal numbers, but pyrene degraders increased from undetectable levels to 7.09 log₁₀ degraders/g in the contaminated soil. The FAME analysis of bacterial isolates detected no pyrene effect, but wholesoil FAME indicated an increase in the contaminated soil of a fatty acid characteristic of protozoa and a major fatty acid detected in isolated degraders. In the pyrene + phenanthrene experiment, the contaminants had no impact on bacterial, fungal, or actinomycete numbers but increased degrader numbers. No effect of pyrene + phenanthrene was detected by isolate FAME, but whole-soil FAME indicated an effect similar to that in the pyrene experiment. The results indicate that pyrene, although not impacting microbial numbers, may have altered the soil microbial composition and that Captina silt loam can develop an effective degrader population under tested conditions.     

Pyrene mineralization capacity increases with compost maturity

Experiments were conducted to determine the effects of composting or simple addition of compost to the mineralization of n-hexadecane, pyrene and benzo(a)pyrene in soil. Soil (contaminated or clean) was composted with maple leaves and alfalfa. Samples from different composting phases were spiked with radiolabeled and cold n-hexadecane, pyrene or benzo(a)pyrene, placed in aerated microcosms at different temperatures, and monitored for mineralization. It was determined that neither composting nor the addition of compost had any effect on n-alkane or benzo(a)pyrene mineralization. In contrast, the pyrene mineralization rate increased dramatically with the amount of time that soil had been composted. Highest pyrene mineralization rates and extents (more than 60% after 20 days) were obtained when pyrene was in contact with composted soil from the curing stage. Neither thermophiles (55 °C) nor fungi were responsible for pyrene mineralization.     

Biodegradation of Pyrene in Marine Beach Sediments

The potential of chitosan (0.1% dry weight equivalent) as a bioremediation additive for removal of the recalcitrant polycyclic aromatic hydrocarbon (PAH) pyrene in marine beach sediments was investigated using an open irrigation system over a 63-day period. Osmocote, a slow release fertilizer, was used as the key nutrient supplement at a concentration of 1% in sediment (dry weight equivalent). Osmocote significantly (p < .05) enhanced nutrient levels, and the metabolic activity of the indigenous microbial biomass. Both additives were comparable in stimulating pyrene biodegradation rates; with chitosan (0.062 day^?1) being slightly more effective as an amendment than Osmocote (0.051 day^?1). Loss of pyrene in a control sediment (i.e., pyrene, without additives) was 66.6% over a 63-day period. The concurrent application of additives yielded the greatest biodegradation rates (0.072day^?1), resulting in a 98.2% loss of pyrene over 63 days. The treatment of oil contaminated beach sediments with both osmocote (1%) and chitosan (0.1%) is therefore recommended as an effective treatment for the intrinsic biodegradation of recalcitrant PAHs in oil-contaminated beach sediments.     

New Pyrene Derivatives for Fluorescent Labeling of Oligonucleotides

Abstract

A series of pyrene-containing reagents have been synthesized and used for the fluorescent labeling of oligonucleotides.     

Influence of Surfactants on Pyrene Desorption and Degradation in Soils

Four surfactants were tested at five concentrations to determine their abilities to solubilize soil-adsorbed pyrene. Inoculation with pyrene degraders in the presence of the surfactant Witconol SN70 was the most effective treatment for pyrene mineralization (46 to 80%) under unsaturated conditions, but the surfactant inhibited the effectiveness of these inoculants in soil slurries.     

Pyrene intercalating nucleic acids with a carbon linker

We have synthesized a carbon linker analogue of INA (oligonucleotides containing insertions of 1-O-(1-pyrenylmethyl)glycerol). Thermal stability studies showed an increase in melting temperature in favor of the carbon linker analogue. We also synthesized a carbon linker analogue with two pyrenes geminally attached. Fluorescence studies of this intercalating nucleic acid with the pyrene moieties inserted as a bulge showed formation of an excimer band. When a mismatch was introduced at the site of the intercalator, an excimer band was formed for the destabilized duplexes whereas an exciplex band was observed when the stability of the duplex was retained.