脂肪醇氧化酶基因缺失对热带假丝酵母生理功能的影响

为考察热带假丝酵母(Candida tropicalis)脂肪醇氧化酶(FAO)基因缺失对菌株自身的影响,利用同源重组的方法敲除或回补FAO1和FAO2基因,研究突变株的生长情况和胞内脂肪醇氧化酶活性变化,并进-步评价细胞利用烷烃合成脂肪醇的能力.结果表明:成功构建了基因缺失突变株FTYT(ΔFAO11/ΔFAO12)...     

热带假丝酵母对癸烯—1及十二烯—1的两端氧化

研究了热带假丝酵母突变株SD。分别对癸烯—1及十二烯—1的两端氧化。在癸烯—1的主要代谢物中有癸二酸、壬二酸和辛二酸,而在十二烯—1的主要代谢物串含十二碳二元酸、十一碳二元酸、癸二酸和壬二酸。这些产物均通过GC和GC—MS分析确定。根据这些结果提出了烯烃—1的微生物两端氧化途径。从烯烃—l得到同碳链的及比其少一个碳原子的饱和二元酸表明,在该菌的烯烃—l代谢中,除末端甲基的氧化外,另一末端双键的水合作用可能起着重要作用。     

N+离子注入热带假丝酵母对长链二元酸产量的影响*

用热带假丝酵母（Ｃａｎｄｉｄａ ｔｒｏｐｉｃａｌｉｓ）ＳＣＢ４１２作为出发菌株,经能量５０ＫｅＶ、剂量１× １０^１１～５ ×１０^１５ ｉｏｎｓ／ｃｍ^２的Ｎ^＋离子注入诱变处理,以产生可遗传的诱变。 Ｎ^＋离子注入后,存活率与剂量呈指数衰减关系：ｌｏｇ（存活率％）＝ ８．２３－ ０．６０４ × ｌｏｇ（剂量）,在培养过程中可观察到酵母菌菌落和细胞形态均发生了变化。经筛选,获得了一株能够利用     

N~ 离子注入热带假丝酵母对长链二元酸产量的影响

用热带假丝酵母（Ｃａｎｄｉｄａ ｔｒｏｐｉｃａｌｉｓ）ＳＣＢ４１２作为出发菌株,经能量５０ＫｅＶ、剂量１× １０~１１～５ ×１０~１５ ｉｏｎｓ／ｃｍ~２的Ｎ~＋离子注入诱变处理,以产生可遗传的诱变。 Ｎ~＋离子注入后,存活率与剂量呈指数衰减关系：ｌｏｇ（存活率％）＝ ８．２３－ ０．６０４ × ｌｏｇ（剂量）,在培养过程中可观察到酵母菌菌落和细胞形态均发生了变化。经筛选,获得了一株能够利用正十二烷烃发酵产生长链二元酸的高产菌热带假丝酵母ＳＣＢ６０９。在初始正十二烷烃浓度为１５％（ｖ／ｖ）下产酸量由４３．５ｇ／Ｌ上升到７３．２ｇ／Ｌ。比较两株菌发酵生长特性的差异,产酸过程有一定的变化。     

利用可重复使用的URA3标记基因建立热带假丝酵母基因敲除系统

热带假丝酵母(Candida tropicalis)在发酵工业中具有重要的应用潜力,但二倍体遗传结构和较低的遗传转化效率限制了其代谢工程育种技术的应用。建立可靠的遗传转化技术并高效的删除目的基因是代谢工程改造热带假丝酵母的重要前提。文章以C. tropicalis ATCC 20336为出发菌株,通过化学诱变筛选获得了尿嘧啶缺陷型突变株C. tropicalis XZX(ura3/ura3)。以丙酮酸脱羧酶(Pyruvate decarboxylase,PDC)基因作为靶基因构建了两端包含同源臂并在选择性标记C. tropicalis URA3(Orotidine-5′-phosphate decarboxylase,乳清酸核苷-5-磷酸脱羧酶)基因两侧同向插入源于沙门氏菌(Salmonella typhimurium)的hisG序列的基因敲除盒PDC1-hisG-URA3-hisG- PDC1(PHUHP),并转化宿主菌株C. tropicalis XZX,筛选获得PHUHP片段正确整合到染色体的PDC基因位点的转化子XZX02。在此基础上,将转化子XZX02涂布于5-FOA(5-氟乳清酸)选择培养基上,筛选得到URA3基因从PHUHP片段中丢失的营养缺陷型菌株XZX03。进一步构建了第2个PDC等位基因的删除表达盒PDCm- URA3-PDCm,并转化C. tropicalis XZX03菌株,获得转化子C. tropicalis XZX04。经PCR和DNA测序确认转化子C. tropicalis XZX04细胞染色体上的两个PDC等位基因被成功敲除。文章建立了一种营养缺陷型标记可重复使用的热带假丝酵母遗传转化技术,利用该技术成功敲除了细胞的PDC基因,为进一步利用代谢工程改造热带假丝酵母奠定了基础。     

产长链二元酸热带假丝酵母酸分泌过程研究

热带假丝酵母（C．tropicalis）是长链二元酸发酵生产中常用菌种。其二元酸分泌过程是烧烃代谢过程中的重要步骤,pH在7．4～8．2范围内,足够高的pH对分泌和产酸是必需的。二元酸钠盐明显不利于分泌过程。二元酸的分泌相对于胞内ω一氧化过程是快速过程。建立了一种用于研究分泌过程的方法,利用静息细胞在缓冲溶液中分泌所引起的溶液pH变化来获得酸分泌量的在线数据。     

钙离子对热带假丝酵母CT 1-12细胞生长影响的初步研究

研究了Ca^2 对热带假丝酵母增殖的影响,发现钙离子的加入对细胞增殖是有促进作用的,可以加快细胞周期,促进作用的强弱依Ca^2 浓度不同而异,最适浓度在10^-4-10^02mol/L之间。浓度过高（高于10^-1mol/L）会对生长起抑制作用。最佳钙离子浓度下同期菌浓比空白样高出34％。     

热带假丝酵母ctpxa1基因缺失菌的构建及对长链二元酸积累的影响

Pxa1p为酿酒酵母Saccharomyces cerevisiae过氧化物酶体上的膜蛋白,与Pxa2p组成二聚体,参与转运长链脂肪酸进入过氧化物酶体过程。热带假丝酵母能够发酵烷烃和脂肪酸生产长链二元酸,而过氧化物酶体中发生的β-氧化会消耗产生的长链二元酸造成产率降低。本研究以热带假丝酵母Candida tropicalis 1798为宿主菌,通过基于PCR片段的同源单交换法,快速构建ctpxa1基因敲除菌株C.tropicalis 1798-pxa1。利用半定量RT-PCR技术,检测ctpxa1基因在C.tropicalis 1798、C.tropicalis 1798-pxa1的表达量,灰度值比值为2.03,表明ctpxa1在C.tropicalis 1798-pxa1中的表达被弱化。经144 h发酵,C.tropicalis 1798-pxa1比C.tropicalis 1798的十二碳二元酸产量明显提升,其产出浓度为10.3 g/L,比野生型菌株C.tropicalis 1798提高了94.3%。     

表型相似的热带假丝酵母和麦芽糖假丝酵母在脉冲电泳核型上的差异

热带假丝酵母Ｃａｎｄｉｄａ ｔｒｏｐｉｃａｌｉｓ （Ｃａｓｔｅｌｌａｎｉ ）Ｂｅｒｋｈｏｕｔ和麦芽糖假丝酵母Ｃ． ｍａｌｔｏｓａＫｏｍａｇａｔａ, Ｎａｋａｓｅ ＆ Ｋａｔｓｕｙａ是两种可利用烃类作为碳和能量来源的酵母菌,前者还是一种条件致病菌,可引起系统感染。这两种假丝酵母菌在形态和生理生化性状上非常相似,用常规分类方法不易准确地鉴别。本研究对Ｃ． Ｔｒｏｐｉｃａｌｉｓ和Ｃ ｍａｌｔｏｓａ的模式菌株以及中国普通微生物菌种保藏中心（ＣＧＭＣＣ）保藏的归于这两个种名下的其它菌株进行了脉冲电泳核型比较分析。发现这两个表型相似的种具有明显不同的染色体ＤＮＡ分子带型,而同一种内的不同菌株却具有相同或相似的分子核型。Ｃ．Ｔｒｏｐｉｃａｌｉｓ的特异染色体ＤＮＡ分子带谱为２条８．５—１．２ Ｍｂ的带, ４条２．３－３．４ Ｍｂ的带。 Ｃ ｍａｌｔｏｓａ的特异带谱为： ３～４条分子量在１．１－１．３Ｍｂ范围内的带, １条约为２．２Ｍｂ的带以及２－３条大小为３．２－３．５Ｍｂ的带。 Ｃ ｔｒｏｐｉｃａｌｉｓ与Ｃ ｍａｌｔｏｓａ在染色体ＤＮＡ分子带型上的差异与二者在可溶性淀粉的同化能力和４０℃下的生长能力上的差异具有明显的相关性…     

代谢工程改造热带假丝酵母生产1,2,4-丁三醇

【背景】 1,2,4-丁三醇属于手性多羟基醇,是一种重要的有机合成的化学中间体,以木糖为原料经四步酶反应是目前研究最多的生物合成路线。然而大肠杆菌的鲁棒性较弱,对发酵液中一些抑制剂的耐受性不是很好,同时存在严重的碳代谢抑制。近年来,鲁棒性较好的酵母菌成为更有吸引力的宿主,其中热带假丝酵母具有天然的木糖代谢途径,可以更好地利用木糖。【目的】在热带假丝酵母中构建从木糖到1,2,4-丁三醇的代谢途径。【方法】在热带假丝酵母中敲除木糖还原酶基因GRE3,从而阻断自身的木糖代谢途径。将来源于Caulobacter crescentus的木糖脱氢酶基因(xylB)和木糖酸脱水酶基因(xylD)及来源于Lactococcus lactis的酮酸脱羧酶基因(kdcA)克隆至C. tropicalis 207中,得到重组菌C. tropicalis BT,在此基础上考察重组菌代谢木糖合成1,2,4-丁三醇的能力,确定限速步骤,并通过增加关键基因xylD与kdcA的拷贝数提高1,2,4-丁三醇产量。【结果】在30℃、200 r/min、接种量1%、以30 g/L木糖为底物的情况下,重组菌的1,2,4-丁三醇的产量达到了1.2 g/L,在5 L发酵罐中的产量达到了3.7 g/L。【结论】在热带假丝酵母中实现以木糖为底物的1,2,4-丁三醇代谢途径,并通过在基因组上增加关键基因xylD与kdcA的拷贝数,获得了一株高产1,2,4-丁三醇的重组酵母菌株,这为后续在热带假丝酵母中进一步提高1,2,4-丁三醇产量奠定了基础。     

Candida amazonensis FLP/FRT基因敲除系统的构建及初步验证

【目的】构建一个适用于Candida amazonensis抗性标记可重复使用的FLP/FRT基因敲除系统,并通过敲除C.amazonensis的丙酮酸脱羧酶基因(Pyruvate decarboxylase,PDC)对该系统进行初步验证。【方法】以gfpm(绿色荧光蛋白基因)为报告基因,通过添加相应诱导剂评估Spathaspora passalidarum来源启动子(SpXYLp、SpMAL6p、SpMAL1p、SpGAL1p)和Saccharomyces cerevisiae来源Sc GAL1p启动子在C.amazonensis中的诱导调控性能。选择严格诱导型启动子调控FLP重组酶的表达,并在FLP表达盒和潮霉素(Hygromycin B)抗性标记基因(hphm)两端添加同向重复的FRT位点,以PDC基因作为靶基因构建敲除盒PRFg HRP,转化宿主菌C.amazonensis CBS 12363,筛选得到阳性转化子后,通过添加诱导剂,表达FLP重组酶,实现FRT位点间片段切除。【结果】诱导调控实验表明启动子SpGAL1p(受半乳糖诱导)和SpMAL1p(受麦芽糖诱导)是适用于C.amazonensis的严格诱导型启动子。以SpGAL1p调控FLP基因表达,构建的敲除盒PRFg HRP成功转化宿主菌,获得阳性转化子C.amazonensis PDC01,通过添加半乳糖诱导,成功切除基因组中FLP表达盒和抗性标记盒,获得突变株C.amazonensis PDC02。【结论】首次建立了一个适用于C.amazonensis抗性标记可重复使用的FLP/FRT基因敲除系统,并利用该系统成功敲除了C.amazonensis内的PDC基因,为进一步利用代谢工程改造C.amazonensis酵母奠定了良好基础。     

氟康唑对热带念珠菌活性氧和线粒体膜电位的影响

为了探讨氟康唑作用机制,观察它对热带念珠菌作用后存活率、活性氧(Reactive oxygen species,ROS)、线粒体膜电位(Mitochondrial membrane potential,△Ψm)和细胞周期的变化。参照NCCLS M27-A方案的微量稀释法测定氟康唑对热带念珠菌的最低抑菌浓度(MIC);热带念珠菌与不同浓度氟康唑共同培养后用流式细胞术(Flow cytometry,FCM)分析热带念珠菌存活率、ROS、线粒体膜电位△Ψm和细胞周期的变化。结果表明,氟康唑作用后,热带念珠菌氟康唑耐药株的存活率、ROS、线粒体膜电位△Ψm和细胞周期各期比例均没有明显变化;而热带念珠菌氟康唑敏感株的存活率和线粒体膜电位△Ψm明显下降,ROS明显升高,而且大部分热带念珠菌阻滞于G2/M期,并出现明显凋亡峰,呈一定的时间剂量依赖关系。自由基清除剂谷胱甘肽抑制热带念珠菌ROS的产生,阻止细胞周期G2/M期阻滞和降低凋亡。由此可见,氟康唑可能通过刺激热带念珠菌产生过多ROS,并使线粒体膜电位△Ψm下降,从而诱导热带念珠菌凋亡。     

Isolation of Hem3 mutants from Candida albicans by sequential gene disruption

Summary Molecular methods for directed mutagenesis in Candida albicans have relied on a combination of gene disruption by transformation to inactivate one allele and UV-induced mitotic recombination or point mutation to produce lesions in the second allele. An alternate method which uses two sequential gene disruptions was developed and used to construct a C. albicans mutant defective in a gene essential for synthesizing tetrapyrrole (uroporphyrinogen I synthase). The Candida gene was cloned from a random library by complementation of the hem3 mutation in Saccharomyces cerevisiae. The complementing region was limited to a 2.0 kb fragment by subcloning and a BglII site was determined to be within an essential region. Linear fragments containing either the Candida URA3 or LEU2 gene inserted into the BglII site were used to disrupt both alleles of a leu2, ura3 mutant by sequential transformation. Ura⁺, Leu⁺ heme-requiring strains were recovered and identified as hem3 mutants by Southern hybridization, transformation to heme independence by the cloned gene, and enzyme assays.     

Subcellular localization of long-chain alcohol dehydrogenase and aldehyde dehydrogenase in n-alkane-grown Candida tropicalis

Long-chain alcohol dehydrogenase and longchain aldehyde dehydrogenase were induced in the cells of Candida tropicalis grown on n-alkanes. Subcellular localization of these dehydrogenases, together with that of acyl-CoA synthetase and glycerol-3-phosphate acyltransferase, was studied in terms of the metabolism of fatty acids derived from n-alkane substrates. Both longchain alcohol and aldehyde dehydrogenases distributed in the fractions of microsomes, mitochondria and peroxisomes obtained from the alkane-grown cells of C. tropicalis. Acyl-CoA synthetase was also located in these three fractions. Glycerol-3-phosphate acyltransferase was found in microsomes and mitochondria, in contrast to fatty acid -oxidation system localized exclusively in peroxisomes. Similar results of the enzyme localization were also obtained with C. lipolytica grown on n-alkanes. These results suggest strongly that microsomal and mitochondrial dehydrogenases provide long-chain fatty acids to be utilized for lipid synthesis, whereas those in peroxisomes supply fatty acids to be degraded via -oxidation to yield energy and cell constituents.     

Recombinant Candida rugosa LIP2 expression in Pichia pastoris under the control of the AOX1 promoter

The LIP2 isoenzyme gene from Candida rugosa has been completely synthesised and functionally expressed under the AOX1 promoter control in Pichia pastoris. The on-line monitoring and control of methanol, the key inducer carbon source in fed-batch cultures, has enhanced the yield product/biomass 7.8-fold and the productivity 12.8-fold compared to the best batch cultivation with the Pichia system and, 10-fold compared to the fed-batch cultivation process using the native C. rugosa strain.Nevertheless, the high ionic strength of culture broth favoured aggregation of Lip2, leading to total loss of lipolytic activity. After cultivation, a diaultrafiltration process was implemented to diminish ionic strength, allowing for the recovery of lipolytic activity in the diaultrafiltrate. The developed bioprocess resulted into a reproducible product in terms of quality and productivity.     

A genetic map of Xenopus tropicalis

We present a genetic map for Xenopus tropicalis, consisting of 2886 Simple Sequence Length Polymorphism (SSLP) markers. Using a bioinformatics-based strategy, we identified unique SSLPs within the X. tropicalis genome. Scaffolds from X. tropicalis genome assembly 2.0 (JGI) were scanned for Simple Sequence Repeats (SSRs); unique SSRs were then tested for amplification and polymorphisms using DNA from inbred Nigerian and Ivory Coast individuals. Thus identified, the SSLPs were genotyped against a mapping cross panel of DNA samples from 190 F2 individuals. Nearly 4000 SSLPs were genotyped, yielding a 2886-marker genetic map consisting of 10 major linkage groups between 73 and 132 cM in length, and 4 smaller linkage groups between 7 and 40 cM. The total effective size of the map is 1658 cM, and the average intermarker distance for each linkage group ranged from 0.27 to 0.75 cM. Fluorescence In Situ Hybridization (FISH) was carried out using probes for genes located on mapped scaffolds to assign linkage groups to chromosomes. Comparisons of this map with the X. tropicalis genome Assembly 4.1 (JGI) indicate that the map provides representation of a minimum of 66% of the X. tropicalis genome, incorporating 758 of the approximately 1300 scaffolds over 100,000 bp. The genetic map and SSLP marker database constitute an essential resource for genetic and genomic analyses in X. tropicalis.     

分别利用产甘油假丝酵母抗逆转录因子CgSTB5和CgSEF1对酿酒酵母菌株糠醛耐受改造

【背景】纤维素是生物转化解决能源问题的主要原料之一,其水解物中存在严重影响抑制菌株生长的糠醛,需脱毒才可应用于发酵,提高菌株耐受性是解决纤维素水解液实际生产应用的关键。【目的】酿酒酵母(Saccharomyces cerevisiae)是主要的纤维素水解液发酵工业菌株,但糠醛耐受性较低,通过分子改造获得具有高糠醛耐受性的菌株。【方法】利用新获得的产甘油假丝酵母(Candidaglycerinogenes)的相关抗逆转录因子CgSTB5、CgSEF1和CgCAS5,通过分子技术进行S.cerevisiae改造,考察其对酿酒酵母糠醛耐受性的影响,并尝试应用于未脱毒纤维素乙醇发酵。【结果】单个表达CgSTB5和CgSEF1的酿酒酵母,通过菌株点板实验表明菌株的糠醛耐受性提高25%以上,并且摇瓶发酵结果显示糠醛降解性能明显提高,生长延滞期明显缩短,S.cerevisiae W303/p414-CgSTB5的未脱毒纤维素乙醇发酵生产效率提高12.5%左右。【结论】转录因子CgSTB5和CgSEF1均能对提高酿酒酵母糠醛耐受性起到重要作用,并且有助于提高酿酒酵母菌株未脱毒纤维素乙醇发酵性能。     

Kinetic and structural evidence for the identification of 11-hydroxythromboxane B2 dehydrogenase as cytosolic aldehyde dehydrogenase

We have recently purified 11-hydroxythromboxane B₂ dehydrogenase from porcine kidney and identified it as cytosolic aldehyde dehydrogenase (EC 1.2.1.3) based on amino acid analysis and other protein characteristics. In the present paper we have studied the catalytic interaction of thromboxane B₂ (TXB₂) with different aldehyde substrates and a potent aldehyde dehydrogenase inhibitor, disulfiram. TXB₂ was a competitive inhibitor of the aldehyde dehydrogenase reaction in assays with 3,4-dihydroxyphenylacetaldehyde, a high affinity substrate. The conversion of TXB₂ to 11-dehydro-TXB₂ was also inhibited by propanal and disulfiram.

The protein characteristics of the enzyme have also been further studied. The native enzyme is a tetramer and has an isoelectric point of 7.0 which is comparable with that of cytosolic aldehyde dehydrogenases from other species. Taken together the present data further indicate that 11-hydroxythromboxane B₂ dehydrogenase is identical with cytosolic aldehyde dehydrogenase and that substrates and inhibitors of aldehyde dehydrogenase interact with thromboxane metabolism in vitro.