Absorption Enhancements in Plasmonic Solar Cells Coated with Metallic Nanoparticles

We find that three mechanisms lead to the absorption enhancements of light in a thin-film amorphous silicon solar cell coated with a periodic array of silver nanoparticles on the rear surface according to our simulation. They are localized surface plasmon modes of the silver nanoparticles, Fabry–Pérot resonant cavity modes and waveguide effects. Each enhancing mechanism can yield a maximum absorption enhancement of over two times at the corresponding resonant wavelengths when the nanoparticles cover 20 % of the solar cell surface, and an average absorption enhancement of up to 57 % can be achieved in the AM 1.5 G solar spectrum. The absorption enhancements can also be tuned in spectrum to optimize the total absorption in a plasmonic solar cell.     

Sulfur-Specific Microbial Desulfurization of Sterically Hindered Analogs of Dibenzothiophene

Dibenzothiophenes (DBTs) bearing alkyl substitutions adjacent to the sulfur atom, such as 4,6-diethyldibenzothiophene (4,6-DEDBT), are referred to as sterically hindered with regard to access to the sulfur moiety. By using enrichment cultures with 4,6-DEDBT as the sole sulfur source, bacterial isolates which selectively remove sulfur from sterically hindered DBTs were obtained. The isolates were tentatively identified as Arthrobacter species. 4,6-DEDBT sulfone was shown to be an intermediate in the 4,6-DEDBT desulfurization pathway, and 2-hydroxy-3,3(prm1)-diethylbiphenyl (HDEBP) was identified as the sulfur-free end product.     

High-Temperature Microbial Sulfate Reduction Can Be Accompanied by Magnetite Formation

The hyperthermophilic sulfate-reducing archaeon Archaeoglobus fulgidus was found to be capable of lithoautotrophic growth on medium containing molecular hydrogen, sulfate, and amorphous Fe(III) oxide. During the growth of this microorganism, amorphous Fe(III) oxide was transformed into black strongly magnetic precipitate rich in magnetite, as shown by Moessbauer studies. Experiments involving inhibition of microbial sulfate reduction and abiotic controls revealed that magnetite production resulted from chemical reactions proceeding at elevated temperatures (83°C) between molecular hydrogen, amorphous Fe(III) oxide, and sulfide formed enzymatically in the course of dissimilatory sulfate reduction. It follows that magnetite production in this system can be characterized as biologically mediated mineralization. This is the first report on magnetite formation as a result of activity of sulfate-reducing microorganisms.     

Stimulation of Carotenogenesis by Microbial Cells

Spent mycelia of Blakeslea trispora recovered from a previous fermentation enhanced carotene production by mated cultures of the same organism. Peak yields of 107 to 142 mg of carotene per 100 ml of medium were achieved in 6 days. β-Carotene constituted 92% of the total carotenoids produced. The enhancing substance was found present in an aqueous extract of the mycelium. Part of its activity was due to an organic acid fraction. Other microbial cells, molds, yeasts, and bacteria were also capable of enhancing carotene production.     

Microbial Processes Associated with Roots of Bulbous Rush Coated with Iron Plaques

Bulbous rush (Juncus bulbosus) is a pioneer species in acidic, iron-rich, coal mining lakes in the eastern part of Germany. Juncus roots are coated with iron plaques, and it has been suggested that microbial processes under the iron plaques might be supportive for Juncus plant growth. The objectives of this work were to enumerate the microbes involved in the turnover of iron and organic root exudates in the rhizoplane, to investigate the effect of oxygen and pH on the utilization of these exudates by the rhizobacteria, and to study the ability of the root-colonizing microbiota to reduce sulfate. Enumeration studies done at pH 3 demonstrated that 10⁶ Fe(III) reducers and 10⁷ Fe(II) oxidizers g (fresh wt root)^–1 were associated with Juncus roots. When roots were incubated in goethite-containing medium without and with supplemental glucose, Fe(II) was formed at rates approximating 1.1 mmol g (fresh wt root) ^–1 d^–1 and 3.6 mmol g (fresh wt root)^–1 d^–1 under anoxic conditions, respectively. These results suggest that a rapid microbially mediated cycling of iron occurs in the rhizosphere of Juncus roots under changing redox conditions. Most-probable-number estimates of aerobes and anaerobes capable of consuming root exudates at pH 3 were similar in the rhizosphere sediment and in Juncus roots, but numbers of aerobes were significantly higher than those of anaerobes. At pH 3, supplemental organic exudates were primarily subject to aerobic oxidation to CO₂ and not subject to fermentation. However, at pH 4.5, root exudates were also rapidly utilized under anoxic conditions. Root-associated sulfate reduction was not observed at pH 3 to 4.5 but was observed at pH 4.9. The pH increased during all root-incubation studies both under oxic and anoxic conditions. Thus, as result of the microbial turnover of organic root exudates, pH and CO₂ levels might be elevated at the root surface and favor Juncus plants to colonize acidic habitats.     

Antibacterial Activity of Polymer Coated Cerium Oxide Nanoparticles

Cerium oxide nanoparticles have found numerous applications in the biomedical industry due to their strong antioxidant properties. In the current study, we report the influence of nine different physical and chemical parameters: pH, aeration and, concentrations of MgSO₄, CaCl₂, KCl, natural organic matter, fructose, nanoparticles and Escherichia coli, on the antibacterial activity of dextran coated cerium oxide nanoparticles. A least-squares quadratic regression model was developed to understand the collective influence of the tested parameters on the anti-bacterial activity and subsequently a computer-based, interactive visualization tool was developed. The visualization allows us to elucidate the effect of each of the parameters in combination with other parameters, on the antibacterial activity of nanoparticles. The results indicate that the toxicity of CeO₂ NPs depend on the physical and chemical environment; and in a majority of the possible combinations of the nine parameters, non-lethal to the bacteria. In fact, the cerium oxide nanoparticles can decrease the anti-bacterial activity exerted by magnesium and potassium salts.     

Biodesulfurization of dibenzothiophene by microbial cells coated with magnetite nanoparticles

Microbial cells of Pseudomonas delafieldii were coated with magnetic Fe3O4 nanoparticles and then immobilized by external application of a magnetic field. Magnetic Fe3O4 nanoparticles were synthesized by a coprecipitation method followed by modification with ammonium oleate. The surface-modified Fe3O4 nanoparticles were monodispersed in an aqueous solution and did not precipitate in over 18 months. Using transmission electron microscopy (TEM), the average size of the magnetic particles was found to be in the range from 10 to 15 nm. TEM cross section analysis of the cells showed further that the Fe3O4 nanoparticles were for the most part strongly absorbed by the surfaces of the cells and coated the cells. The coated cells had distinct superparamagnetic properties. The magnetization (delta(s)) was 8.39 emu.g(-1). The coated cells not only had the same desulfurizing activity as free cells but could also be reused more than five times. Compared to cells immobilized on Celite, the cells coated with Fe3O4 nanoparticles had greater desulfurizing activity and operational stability.     

Plasmonic Scattering by Metal Nanoparticles for Solar Cells

We investigate on absorption and scattering from metal nanoparticles in view of possible applications to photovoltaic cells. The analysis, accounting for most of the parameters involved in the physical mechanism of scattering, is split into two parts. In the first part, scattering from a metallic sphere is treated analytically to investigate the dependence on sphere size, sphere metal, and surrounding medium. In the second part, scattering from a metallic particle is investigated as a function of particle shape (spheroids, hemispheres, and cylinders) via numerical simulations based on the finite-difference time-domain method. The aim of the work is to provide a systematic study on scattering and absorption by metal nanoparticles, exploring several combinations of material and geometrical parameters in order to identify those combinations that could play a key role in solar cell efficiency improvement.     

Mechanism of Dimercaptosuccinic Acid Coated Superparamagnetic Iron Oxide Nanoparticles with Human Serum Albumin

To research the mechanism of dimercaptosuccinic acid coated‐superparamagnetic iron oxide nanoparticles (SPION) with human serum albumin (HSA), the methods of spectroscopy, molecular modeling calculation, and calorimetry were used in this paper. The inner filter effect of the fluorescence intensity was corrected to obtain the accurate results. Ultraviolet–visible absorption and circular dichroism spectra reflect that SPION changed the secondary structure with a loss of α‐helix and loosened the protein skeleton of HSA; the activity of the protein was also affected by the increasing exposure of SPION. Fluorescence lifetime measurement indicates that the quenching mechanism type of this system was static quenching. The isothermal titration calorimetry measurement and molecular docking calculations prove that the predominant force of this system was the combination of Van der Waals’ force and hydrogen bonds.     

Toxicity Assessment of Silica Coated Iron Oxide Nanoparticles and Biocompatibility Improvement by Surface Engineering

We have studied in vitro toxicity of iron oxide nanoparticles (NPs) coated with a thin silica shell (Fe₃O₄/SiO₂ NPs) on A549 and HeLa cells. We compared bare and surface passivated Fe₃O₄/SiO₂ NPs to evaluate the effects of the coating on the particle stability and toxicity. NPs cytotoxicity was investigated by cell viability, membrane integrity, mitochondrial membrane potential (MMP), reactive oxygen species (ROS) assays, and their genotoxicity by comet assay. Our results show that NPs surface passivation reduces the oxidative stress and alteration of iron homeostasis and, consequently, the overall toxicity, despite bare and passivated NPs show similar cell internalization efficiency. We found that the higher toxicity of bare NPs is due to their stronger in-situ degradation, with larger intracellular release of iron ions, as compared to surface passivated NPs. Our results indicate that surface engineering of Fe₃O₄/SiO₂ NPs plays a key role in improving particles stability in biological environments reducing both cytotoxic and genotoxic effects.     

Interaction of SiFe Nanoparticles with Epithelial and Lymphoid Cells

Russian Journal of Bioorganic Chemistry - Silicon and silicon-based nanoparticles (SiNP) attract scientific attention due to the biocompatibility and assimilation of silicon by body tissues....     

Reliable Detection of Dead Microbial Cells by Using Fluorescent Hydrazides

We have developed a new method for accurate quantification of dead microbial cells. This technique employs the simultaneous use of fluorescent hydrazides and nucleic acid dyes. Fluorescent hydrazides allow detection of cells that cannot be detected with currently used high-affinity nucleic acid dyes. This is particularly important for nongrowing bacterial populations and for multicellular communities containing physiologically heterogeneous cell populations, such as colonies and biofilms.Many different approaches are used to assess the viability of bacterial cells. Currently, the most-used method is determination of the number of CFU, which reflects the ability of cells to reproduce. However, this method is not reliable because a fraction of live bacterial cells cannot divide under standard growth conditions (2) and because some bacteria are killed due to oxidative stress that occurs upon plating (3). Another approach detects dead cells through staining with fluorescent dyes that have high affinities for nucleic acids (RNA and DNA). Examples of this class of dye include Sytox Green (SG) (7). Cells incorporating these stains are then identified using flow cytometry or fluorescence microscopy. Discrimination between live and dead cells is based on the selective entry of dyes such as SG into dead cells, whose membrane integrity is compromised. However, the accessibility of DNA to SG staining also depends on the bacterial cell cycle stage. Cells that die during stationary phase are poorly stained by SG, probably because the DNA topology is altered (7). In addition, it is not possible to detect dead cells whose nucleic acids are degraded.In order to detect dead cells that escape detection by the methods described above, we used an Alexa Fluor hydrazide (AFH) dye. AFH dyes are low-molecular-weight, bright, photostable fluorescent molecules that are generally used as cell tracers by microinjection into eukaryotic cells. Because hydrazine components interact with carbonyl groups (aldehydes and ketones), AFH can be used for the detection of carbonylated proteins (1, 10). The quantity of carbonylated proteins, which are irreversibly damaged, increases after various lethal stresses such as oxidative stress, heat shock, and acidic stress (4). In stationary phase, bacteria also accumulate carbonylated proteins (5). As AFH cannot pass freely across the functional membranes of living cells, we hypothesized that it can be used for the detection of dead cells by tagging carbonylated proteins even when cells are devoid of nucleic acids. For the development of this method, we used Escherichia coli as a model organism.We first compared the results of staining E. coli cells killed by heat treatment with SG and Alexa Fluor 633 hydrazide (AF633H; both purchased from Invitrogen, Carlsbad, CA). Cells from 1- and 15-day-old liquid cultures were killed by incubation at 95°C for 10 min, which reduced the CFU counts in the cultures from approximately 2 × 10⁸/ml to undetectable levels (below 10 CFU/ml). Aliquots of cells taken before and after heat treatment were stained with the two dyes and analyzed with a FACSAria cell sorter and flow cytometer (Becton Dickinson Biosciences, San Jose, CA) (Fig. ​(Fig.1).1). Among cells from the 1-day-old cultures, less than 1% collected before treatment and 99.5% collected after treatment were stained with the two dyes. The 15-day cultures contained large proportions of dead cells even before treatment, as indicated by a decrease in the CFU count from approximately 2 × 10⁹/ml on day 1 to 1 × 10⁸/ml on day 15 (a reduction of 95%). In 15-day cultures, 26 and 89% of cells before heat treatment were stained with SG and AF633H dyes, respectively. After heat treatment, CFU levels were again undetectable, and 99.9% of cells from 15-day cultures were stained with AF633H, while only 36% were stained with SG. This difference in staining of dead cells by SG and AF633H indicates that the ability of dead cells to be stained by SG decreases dramatically with cell age but that the staining of dead cells by AF633H increases with cell age. This may be due at least partly to the fact that AF633H can stain cells devoid of nucleic acids while SG cannot. Reconstruction experiments in which heat-treated and untreated cells from 1- and 15-day-old cultures were mixed in fixed ratios and stained by the two dyes gave expected values (Table ​(Table1),1), showing that AF633H can be used for precise quantification of dead cells. In addition, we observed that AF633H staining remained stable after cell fixation with paraformaldehyde (see Fig. S1 in the supplemental material).Open in a separate windowFIG. 1.Levels of fluorescence of heat-killed microbial cells stained by AF633H and SG are indicated by fluorescence intensity histograms for untreated microbial cells (white histograms) and heat-treated cells (brown histograms). Cells were stained with AF633H (left panels) and SG (right panels). E. coli (MG1665) cells were from 1- and 15-day-old cultures. D. radiodurans, B. subtilis, and S. cerevisiae cells were from 1-day-old liquid cultures. The presence of two peaks of fluorescence for cells stained with SG probably indicates the existence of cells with different numbers of copies of the chromosome.

TABLE 1.

Detection of dead E. coli cells in liquid cultures by AF633H and SG staining^a

A Comparative Study of the Biodesulfurization Efficiency of Acidithiobacillus ferrooxidans LY01 Cells Domesticated with Ferrous Iron and Pyrite

The high-sulfur coal desulfurization process completed by A. ferrooxidans LY01 cells domesticated with either ferrous iron [Fe(II)] or pyrite (FeS₂) was investigated in this article. The desulfurization rate for 13 d was as high as 67.8% for the LY01 cells domesticated with pyrite but was only 45.6% for the LY01 cells domesticated with Fe(II). Bacterial adsorption experiments indicated that the bacterial adsorption quantity onto the pyrite particles was similar to the desulfurization efficiency. FTIR analysis showed that chemical composition of the two cell types was similar, but the LY01 cells domesticated with pyrite had higher levels of hydrophobic aromatic R-O groups than cells domesticated with Fe(II). The amount of extracellular polymeric substances (EPS) from the pyrite-domesticated LY01 cells was 1820 μg C/10¹⁰ cells, which was five times more than the amount of EPS in the Fe(II)-domesticated cells; the EPS readily bound Fe(III) with a maximum binding capacity of 0.21 mg Fe(III) per mg C EPS. Strains of pyrite-domesticated LY01 with a high amount of Fe(III) in their EPS possess greater oxidation activity than Fe(II)-domesticated strains with fewer Fe(III). These experiments showed the importance of the substrate-specific differences in the oxidative activity of A. ferrooxidans LY01. In addition, this study provides theoretical guidance for the future optimization of the biodesulfurization process.     

Neurotoxic Organophosphate Degradation with Polyvinyl Alcohol Gel-Immobilized Microbial Cells

A genetically engineered strain of Escherichia coli that expresses organophosphorus hydrolase (OPH) was immobilized in a polyvinyl alcohol (PVA) cryogel to form a porous biocatalyst that successfully degrades organophosphorus (OP) neurotoxins. The impacts of both diffusion and reaction on biocatalyst efficiency were determined to enable prediction and optimization of the biocatalyst performance. The kinetic rate parameters and activation energies of pure OPH, free cell suspensions, and the immobilized cell biocatalyst were compared. Diffusion was a determining factor for paraoxon hydrolysis because of the very rapid OPH kinetics for its model substrate. Both the paraoxon diffusion through the PVA matrix and the diffusion associated with microbial transport of paraoxon were shown to impact the biocatalyst reaction. However, the enhancement in storage stability resulting from diffusional limitations provides an advantage to diffusion-limited operation. This research may serve as a guide to define the influence of diffusion in biological reaction systems. The broad substrate specificity and hydrolytic efficiency of OPH coupled with the ability to genetically engineer the enzyme for specific target OP neurotoxins enhance the suitability of OPH-based technologies for detoxification of these compounds. Cryoimmobilization provides a suitable vehicle as a cost-effective, efficient technology for bioremediation of environmental media contaminated with OP compounds.     

Selective Desulfurization of Dibenzothiophene by Rhodococcus erythropolis D-1

A dibenzothiophene (DBT)-degrading bacterium, Rhodococcus erythropolis D-1, which utilized DBT as a sole source of sulfur, was isolated from soil. DBT was metabolized to 2-hydroxybiphenyl (2-HBP) by the strain, and 2-HBP was almost stoichiometrically accumulated as the dead-end metabolite of DBT degradation. DBT degradation by this strain was shown to proceed as DBT → DBT sulfone → 2-HBP. DBT at an initial concentration of 0.125 mM was completely degraded within 2 days of cultivation. DBT at up to 2.2 mM was rapidly degraded by resting cells within only 150 min. It was thought this strain had a higher DBT-desulfurizing ability than other microorganisms reported previously.     

Uptake of Fluorescent Iron Oxide Nanoparticles by Oligodendroglial OLN-93 Cells

To investigate the cellular accumulation and intracellular localization of dimercaptosuccinate-coated iron oxide nanoparticles (D-IONPs) in oligodendroglial cells, we have synthesized IONPs that contain the fluorescent dye BODIPY (BP) in their coat (BP-D-IONPs) and have investigated the potential effects of the absence or presence of this dye on the particle uptake by oligodendroglial OLN-93 cells. Fluorescent BP-D-IONPs and non-fluorescent D-IONPs had similar hydrodynamic diameters and ζ-potentials of around 60 nm and ?58 mV, respectively, and showed identical colloidal stability in physiological media with increasing particle size and positivation of the ζ-potential in presence of serum. After exposure of oligodendroglial OLN-93 cells to BP-D-IONPs or D-IONPs in the absence of serum, the specific cellular iron content increased strongly to around 1,800 nmol/mg. This strong iron accumulation was lowered for both types of IONPs by around 50 % on exposure of the cells at 4 °C and by around 90 % on incubation in presence of 10 % serum. The accumulation of both D-IONPs and BP-D-IONPs in the absence of serum was not affected by endocytosis inhibitors, whereas in the presence of serum inhibitors of clathrin-dependent endocytosis lowered the particle accumulation by around 50 %. These data demonstrate that oligodendroglial cells efficiently accumulate IONPs by an endocytotic process which is strongly affected by the temperature and the presence of serum and that BP-D-IONPs are a reliable tool to monitor by fluorescence microscopy the uptake and cellular fate of D-IONPs.     

Production of Microbial Cells from Hydrocarbons

Hydrocarbon-assimilating yeasts and bacteria were isolated from soil and sewage. The optimal conditions of cell yield from liquid paraffine by a Torulopsis yeast and a Pseudomonas strain were studied. A Torulopsis yeast gave, in optimal condition, 70 percent cell yield on a weight conversion basis from light oil fraction. In a strain of Pseudomonas the additions of amino acids, Fe^{+ +}, Mg^{+ +} and Ca^{+ +} ions were effective for cell production. This strain showed, in optimal condition, 80 percent cell yield (wt%) from kerosene.     

利用异化金属还原菌构建含糖微生物燃料电池

环境中的一些微生物通过还原金属氧化物进行无氧呼吸,而石墨电极与金属氧化物相似,也可以作为这类微生物呼吸作用的最终电子受体,利用这类微生物构建微生物燃料电池,以糖类物质为燃料,对电池产电情况、产电原理进行研究。实验结果表明,以Rhodoferaxferrireducens为产电微生物,在外接电阻510Ω条件下,以葡萄糖为燃料,常温下产生的电流密度达158mAm2(平台电压为0.46V,电极有效接触表面积为57cm2),且循环性能良好。更换燃料为其它糖,发现微生物可以利用多种糖进行产电;通过SEM观察发现大量微生物吸附在石墨电极上,用Bradford法对运行20d后电池的细胞量进行定量,测得悬浮细胞蛋白浓度为140mgL,吸附在电极上的生物量为1180mgm2。通过数据采集分析和细菌还原实验,发现吸附在电极上的微生物对电压的产生贡献最大,具有电化学和生物学活性;悬浮细胞对产电贡献很小,不具有电化学和生物学活性。     

Microbial Community Analysis of Anodes from Sediment Microbial Fuel Cells Powered by Rhizodeposits of Living Rice Plants

By placing the anode of a sediment microbial fuel cell (SMFC) in the rhizosphere of a rice plant, root-excreted rhizodeposits can be microbially oxidized with concomitant current generation. Here, various molecular techniques were used to characterize the composition of bacterial and archaeal communities on such anodes, as influenced by electrical circuitry, sediment matrix, and the presence of plants. Closed-circuit anodes in potting soil were enriched with Desulfobulbus-like species, members of the family Geobacteraceae, and as yet uncultured representatives of the domain Archaea.Living plants release substantial amounts of carbon in the soil as rhizodeposits, which are to a large extent transformed into the greenhouse gas methane in wetlands (21). It was recently demonstrated (8, 33) that the rhizodeposits can be harvested by plant microbial fuel cells (plant MFCs) and transformed into electricity. In its most straightforward form, a plant MFC is an adaptation of a sediment MFC (SMFC), which has an anode buried in (planted) sediment, allowing (microbial) oxidation of reduced compounds, and a cathode in the overlying water.The roots and surrounding rhizosphere in a plant SMFC add an extra parameter to the as yet multifaceted SMFC system. In the present study, two molecular profiling techniques (denaturing gradient gel electrophoresis [DGGE] and terminal restriction fragment length polymorphism [T-RFLP]) will be applied to evaluate the effect of plant presence, support material, operation of the electrical circuit, and anode depth on the bacterial and archaeal communities associated with rice SMFC anodes. Phylogenetic analysis will give further insight in their composition.     

Biodesulfurization of water-soluble coal-derived material by Rhodococcus rhodochrous IGTS8

Rhodococcus rhodochrous IGTS8 was previously isolated because of its ability to use coal as its sole source of sulfur for growth. Subsequent growth studies have revealed that IGTS8 is capable of using a variety of organosulfur compounds as sources of sulfur but not carbon. In this article, the ability of IGTS8 to selectively remove organic sulfur from water-soluble coal-derived material is investigated. The microbial removal of organic sulfur from coal requires microorganisms capable of cleaving carbon-sulfur bonds and the accessibility of these bonds to microorganisms. The use of water-soluble coal-derived material effectively overcomes the problem of accessibility and allows the ability of microorganisms to cleave carbon-sulfur bonds present in coal-derived material to be assessed directly. Three coals, two coal solubilization procedures, and two methods of biodesulfurization were examined. The results of these experiments reveal that the microbial removal of significant amounts of organic sulfur from water-soluble coal-derived material with treatment times as brief as 24 h is possible. Moreover, the carbon content and calorific value of biotreated products are largely unaffected. Biotreatment does result, however, in an increased hydrogen and nitrogen content and a decreased oxygen content of the coal-derived material. The aqueous supernatant obtained from biodesulfurization experiments does not contain sulfate, sulfite, or other forms of soluble sulfur at increased concentrations in comparison with control samples. Sulfur removed from water-soluble coal-derived material appears to be incorporated into biomass. (c) 1992 John Wiley & Sons, Inc.