Extensive Genetic Polymorphism of Peptidases A, B, C, and D, in Wild Rabbit (Oryctolagus cuniculus) Populations from the Iberian Peninsula

Genetic polymorphism of peptidases A, B, C, andD in the wild rabbit (Oryctolagus cuniculus)was assessed by horizontal starch gel electrophoresis,in a total of 1003 individuals comprising 16 Iberian and 2 French populations and 1 domestic stock.Twenty-five different alleles were detected: 6 in PEPA,4 in PEPB, 8 in PEPC, and 7 in PEPD. The highest valuesof observed heterozygosity averaged over the four loci were obtained for the southwestern Iberianpopulations and a clinal loss of variability in anortheastern direction was detected. A clear separationbetween the two putative subspecies O. c.cuniculus and O. c. algirus was notobtained.     

Genetic diversity in populations of Sphagnum capillifolium from the mountains of Bulgaria,and their possible refugial role

Abstract

Genetic diversity in eight populations of Sphagnum capillifolium from different Bulgarian mountains was investigated by means of isozyme electrophoresis. High levels of allelic diversity were found (H_S = 0.119), comparable to earlier estimates for northern European populations (H_S = 0.116). Strong differentiation among populations and a low number of widespread genotypes suggest a high degree of isolation and restricted gene flow between populations, which is consistent with generally small and scattered populations. The large proportion of distinguishable genotypes (mean 0.498) suggests high levels of out-crossing either currently or in the past. Introgression between S. capillifolium and S. rubellum, a species not found in Bulgaria, was suggested by the occurrence of rubellum-alleles in five populations from different mountains. This could be explained by an ancient hybridization event in a sympatric population. Based on (1) the high genetic diversity, (2) the fairly wide distribution of alien alleles, and (3) the isolated distribution of populations even within one mountain, a possible survival of S. capillifolium in the Balkan area during the Quaternary ice periods is hypothesized.     

Chromosome dynamic changes in two cultured chinese human embryonic stem cell lines: Single nucleotide polymorphism, copy number variation and loss of heterozygosity

The quality and safety of human embryonic stem cells (hESCs) in clinical application depend on gene stability. Two Chinese hESC lines, Zh1 and Zh21, were incubated over a long period. We observed and compared the gene stability in the passage numbers 20, 17 for Zh1 cell line and passage numbers 27, 60, 68 for Zh21 cell line. Single nucleotide polymorphisis analysis indicated that hESCs in early passages had relative gene stability; and with the increase in passage number, gene instability became strong. We also found that there were copy number variations (CNVs) in both Zh21 and Zh1. We analyzed the CNVs of Chinese Han Beijing man (CHB; normal Chinese people) and found that the all CNV forms were the loss in Zh21, Zh1, and CHB. We also analyzed and compared the related pathways of the mutant genes. We propose three steps to ensure hESC safety. Firstly, besides the conventional methods such as pluripotent genes, chromosome G‐banding and teratoma, high‐resolution DNA chip analysis should also be adopted; secondly, chromosomal properties are monitored every 10 passages in less than passage 50 and every 5 passages in more than passage 50; thirdly, the related pathways of mutant genes should be observed because only the mutant genes with variations of their related pathways may affected cell functions. J. Cell. Biochem. 113: 3520–3527, 2012. © 2012 Wiley Periodicals, Inc.     

Taxon delimitation and genetic similarities of the Sphagnum imbricatum complex,as revealed by enzyme electrophoresis

Abstract

Isozyme electrophoretic studies were used to assess genetic variation in the Sphagnum imbricatum complex in a sample of 1332 plants from 39 populations from western Europe, eastern North America and Japan. Mean pairwise genetic distance among populations clustered and depicted in a UPGMA phenogram correspond to the recognition of four species, viz. Sphagnum portoricense , S. affine , S. imbricatum and S. austinii. The mean pairwise genetic identity among conspecific populations were 0.976, 0.847 and 0.841 for S. austinii , S. affine and S. portoricense, respectively. The mean pairwise genetic identity among taxa was 0.525 (S. austinii–S. affine), 0.476 (S. affine –S. portoricense), 0.600 (S. affine–S. imbricatum), 0.484 (S. imbricatum–S. austinii), 0.629 (S. imbricatum –S. portoricense) and 0.285 (S. austinii–S. portoricense). Populations of S. austinii in Europe are found to be genetically eroded (Hs = 0.001 ± 0.000), (P₉₅ = 0.00), probably due to severe bottlenecks caused by a series of founder effects during postglacial migration from a limited number of glacial refugia in S.W. Europe. The mean genetic diversity of S. affine (Hs = 0.122 ± 0.020) is at the same level as up to now reported for the more variable congeneric species. Among individuals of S. affine, 0.27% displayed mixed markers, indicating that, on rare occasions, hybridization may occur between S. affine and S. austinii. Preliminary genetic analysis of S. steerei supports the recognition of this taxon.     

Differential effects of abscisic acid on desiccation tolerance and carbohydrates in three species of liverworts

Tissues of three species of in vitro grown liverworts, Riccia fluitans, Pallavicinia lyellii, and Marchantia polymorpha, were subjected to rapid drying with and without preculture for 1 week on medium containing 10 μM ABA. ABA preculture initiated total desiccation tolerance in R. fluitans, whereas control tissues were killed after 30 min of drying. Survival was also improved in P. lyellii, whereas ABA did not affect survival of M. polymorpha after rapid drying. ABA treatment did, however, reduce the rate of water loss in M. polymorpha. Total soluble carbohydrates were increased in ABA-treated R. fluitans and P. lyellii, but not in M. polymorpha, although there was no correlation between survival and changes in the percentage of these carbohydrates as reducing sugars. These differences in response to ABA and desiccation likely reflect different adaptations of these three species to conditions in situ.     

The cultivation of mosses and liverworts

Abstract

Rhynchostegium confusum, a new species from Spain and the Iberian Peninsula is described. It is closely related to R. confertum, from which it differs in its noticeably wider stem leaves with wider and apically spurred costa, more flexuous branch leaves, and shorter seta. It also differs in its habit and habitat: the plants are tightly attached to siliceous rocks just over the water level in rivulets that dry out during the summer in the Mediterranean region. Molecular data show that the new species derives from R. confertum, but is clearly differentiated from the studied populations of the latter in a number of missing haplotypes.     

Determination of root biomasses of three species grown in a mixture using stable isotopes of carbon and nitrogen

A method is evaluated that employs variation in stable C and N isotopes from fractionations in C and N acquisition and growth to predict root biomasses of three plant species in mixtures. Celtis laevigata Willd. (C₃), Prosopis glandulosa Torr. (C₃, legume) and Schizachyrium scoparium (Michx.) Nash (C₄), or Gossypium hirsutum L. (C₃), Glycine max (L.) Merr. (C₃ legume), and Sorghum bicolor (L.) Moench (C₄) were grown together in separate, three-species combinations. Surface roots (0–10 cm depth) of each species from each of the two combinations were mixed in various proportions, and the relative abundances of ¹⁵N and ¹⁴N and ¹³C and ¹²C in prepared mixtures, surface roots of single species, and roots extracted from the 80-cm soil profile in which each species combination was grown were analyzed by mass spectrometry. An algebraic determination which employed the δ ¹³C, % ¹⁵N, and C and N concentrations of root subsamples of individual species accounted for more than 95% of the variance in biomass of each species in prepared mixtures with G. max, G. hirsutum, and S. bicolor. A similar analysis demonstrated species-specific differences in rooting patterns. Root biomasses of the C₄ monocots in each combination, S. scoparium and S. bicolor, were concentrated in the upper 20 cm of soil, while those of G. hirsutum and the woody P. glandulosa were largest in lower soil strata. Analyses of stable C and N isotopes can effectively be used to distinguish roots of species which differ in ratios of ¹⁵N to ¹⁴N and ¹³C to ¹²C and thus to study belowground competition between or rooting patterns of associated species with different C and N isotope signatures. The method evaluated can be extended to quantify aboveground and belowground biomasses of component species in mixtures with isotopes of other elements or element concentrations that differ consistently among plants of interest.     

Modelling production and biomasses of zoobenthos in lakes

This work presents a dynamic model to predict zoobenthos in lakes. The model has been developed within the framework of a more comprehensive lake ecosystem model, LakeWeb, which also accounts for the following functional groups of organisms, phytoplankton, bacterioplankton, two types of zooplankton (herbivorous and predatory), macrophytes, prey fish and predatory fish. This work also presents a new data-base for zoobenthos in lakes. Many of the lakes included in this study are situated in the former Soviet Union. They were investigated during the Soviet period and those results have been largely unknown in the West. Using this data-base, this work also presents new empirical models for zoobenthos. The new dynamic model gives seasonal variations (the calculation time, dt, is 1 week using Euler's method and enough iterations to get stable solutions). The basic aim of the dynamic model is that it should capture general functional and structural patterns in lakes. We have demonstrated by several model tests along limnological gradients (total phosphorus concentrations, pH, lake colour, latitude and lake size) that the dynamic model gives predictions that agree well with the values given by the empirical regressions, and also expected and requested divergences from these regressions when they do not provide sufficient resolution. It would have been very difficult indeed to carry out such tests regarding ecosystem responses using traditional methods with extensive field studies in a few lakes. We have given algorithms for (1) production of zoobenthos from eating macrophytes, benthic algae and sediments, (2) elimination (related to the turnover time of zooplankton), and (3) zoobenthos consumption by prey fish, and the factors influencing these processes/rates. The model is driven by data easily accessed from standard monitoring programs or maps a prerequisite for practical utility in contexts of lake management.     

Cuparane- and isocuparane-type sesquiterpenoids in liverworts of the genus Herbertus

Canadian and Japanese Herbertus aduncus, Japanese H. sakuraii and Colombian H. subdentatus belonging to the Jungermanniales (Hepaticae) were chemically investigated. The previously known entcuparane- and novel isocuparane-type sesquiterpenoids are the major components which are of importance as chemical markers in the Herbertaceae.     

The systematic identity of Chiloscyphus trichocoleoides,a new liverwort species from New Zealand,uncovered by morphological and molecular evidence

Abstract

A new liverwort species from Western Nelson Ecological Province of New Zealand known from a single sterile specimen is described. It is unusual in having well-developed stem paraphyllia, and the leaves and underleaves are divided with three levels of ciliate division in a pinnate manner. This morphology suggested membership of Trichocoleaceae or Trichotemnomaceae, but other features of the plant made placement in either family seem unnatural. We determined its position by conducting phylogenetic analyses of rbcL, rps4 and trnL–F sequence datasets from 35 exemplars, and further confirmation of the position was carried out by an extended analysis using rbcL sequence dataset of 59 exemplars. The surprising result is that it belongs within the genus Chiloscyphus, where it is unique in these features. We describe this new species as Chiloscyphus trichocoleoides. Placing the new species in Chiloscyphus has broadened the generic concept of Chiloscyphus, and its phylogenetic relationship within and to other genera such as Clasmatocolea and Heteroscyphus needs further investigation. The results also show that the same morphological features seen in Chiloscyphus and in Trichocoleaceae and Trichotemnomaceae have developed independently.     

Genetic Background of Hirschsprung Disease: A Bridge Between Basic Science and Clinical Application

Hirschsprung's disease (HSCR) is a congenital disorder, defined by partial or complete loss of the neuronal ganglion cells in the intestinal tract, which is caused by the failure of neural crest cells to migrate completely during intestinal development during fetal life. HSCR has a multifactorial etiology, and genetic factors play a key role in its pathogenesis; these include mutations within several gene loci. These have been identified by screening candidate genes, or by conducting genome wide association (GWAS) studies. However, only a small portion of them have been proposed as major genetic risk factors for the HSCR. In this review, we focus on those genes that have been identified as either low penetrant or high penetrant variants that determine the risk of Hirschsprung's disease. J. Cell. Biochem. 119: 28–33, 2018. © 2017 Wiley Periodicals, Inc.     

Bryophytes of St Helena,South Atlantic Ocean. 4. Kurzia nemoides (Hook.f. et Taylor) Grolle and Lepidozia africana Steph. (Jungermanniales,Lepidoziaceae) described from the island

Abstract

The little known species Kurzia nemoides (Hook.f. et Taylor) Grolle and Lepidozia africana Steph. (Lepidoziaceae) are described and illustrated from St Helena, South Atlantic Ocean. Details are given of their distributions on the island, and the differences between related species are discussed. This is the first report of the genus Lepidozia from St Helena.     

Regeneration capacity of oceanic-montane liverworts: implications for community distribution and conservation

Abstract

Scotland’s mountains are home to a rare and unique liverwort community, ‘the oceanic-montane liverwort-rich heath’, but its component species are absent from regions where they could potentially thrive. Many biological characteristics of these species are unknown, making it impossible to explain the reasons for their rarity; however, they have not been observed to produce sporophytes within Britain. We use ex situ cultivation of whole liverworts and fragments, and in situ cultivation of fragments, to assess the growth rate and the potential for vegetative reproduction of several species. Most of the species grew from both fragments and as whole plants, indicating that the rarity of the liverwort heath is not due to poor powers of regeneration. We propose that growth rate and the potential to regenerate from fragments are important factors structuring the liverwort heath community, at least locally. Furthermore, this study demonstrates that there is potential for ex situ conservation of rare liverwort species, in situ enhancement of existing populations, and creation of new ones.     

On the occurrence of lignin or polyphenols in some mosses and liverworts

Six species of mosses (Musci) and two species of liverworts (Hepaticae) have been investigated for the presence of lignin by oxidative degradation. The results clearly demonstrate that these species are devoid of ligrin, but contain other types of phenolic cell wall material.     

Exploitation of underground bee nests by three sympatric consumers in Loango National Park,Gabon

Honey represents a highly nutritious resource for animals, but is difficult to obtain given bees' defensive strategies. We investigated exploitation of the underground nests of stingless bees (Meliplebeia lendliana) by three sympatric consumers in Loango National Park, Gabon: the central African chimpanzee (Pan troglodytes troglodytes), forest elephant (Loxodonta cyclotis) and honey badger (Mellivora capensis). Given the differences in their respective morphological traits and sensory abilities, we hypothesized that chimpanzees would be more limited in digging out the bee nests, compared to the other two competitors, and would show behavioral strategies to overcome such constraints. Our dataset comprised camera trap footage recorded over 60 mo at 100 different bee nests. Chimpanzees visited the nests more often than the other consumers, showing a frequency of extraction success comparable to that observed in honey badgers, the most efficient digger. Both chimpanzees and honey badgers increased their extractive attempts across the dry season, whereas elephants did not. The soil hardness was greater during the dry season than the wet season and, possibly in order to compensate for this, chimpanzees showed a tendency toward digging at nests found in relatively softer soil. They also seemed to be inhibited by indirect cues left by other consumers, possibly as a risk‐avoidance strategy. Overall, chimpanzees and honey badgers extracted the underground nests of stingless bees with similar frequencies, whilst forest elephants did so only occasionally. Moreover, chimpanzees can use tools and other behavioral strategies to overcome the physical limitations that may constrain their exploitation of this resource.     

Sesquiterpene constituents from the essential oils of the liverworts Mylia taylorii and Mylia nuda

The essential oils and extracts of Mylia taylorii and M. nuda were investigated by gas chromatography, mass spectrometry, NMR spectroscopy and chemical correlations. Beside several known compounds 13 new constituents including three new carbon skeletons could be identified. Four hydrocarbons with a molecular formula of C₁₅H₂₂ (m/z 202) were identified as myli-4(15)-ene (1), aromadendra-1(10),4(15)-diene (19), aromadendra-4,10(14)-diene (20) and aromadendra-4,9-diene (21). Three oxaspiro-compounds were identified as 7-epi-bourbon-3-en-5,11-oxide (22), guai-3,10(14)-dien-5,11-oxide (23) and guai-3,9-dien-5,11-oxide (24). The absolute configuration of myli-4(15)-en-3-one (5) could be established by chemical correlation. Together with α-taylorione (7) the corresponding 6,11-seco-compound taylopyran (25) with a new carbon skeleton was identified which serves as a precursor to taylocyclane (26) and taylofuran (27). Taynudol (28) contains a new carbon skeleton with a cyclobutenyl structure.     

A key to the growthforms of mosses and liverworts and guide to their educational value

Mosses and liverworts have considerable potential as a resource for use in environmental studies. However, these small plants are seldom studied in the field, mainly because they can be difficult to identify. It is suggested that this identification problem may be circumvented by using a system of classification of growth-form types, similar to the kind used for lichens in atmospheric pollution studies. Each growth-form is related to a characteristic range of environmental conditions. This article outlines the value of bryophyte growth-forms as an educational resource and includes a key to growth-forms, developed and tested with teachers, students, and naturalists. The key is easy to use and one does not need to be familiar with bryophyte taxonomy or theories on the adaptive significance of structural characteristics.     

Using FTIR spectroscopy to model alkaline pretreatment and enzymatic saccharification of six lignocellulosic biomasses

Fourier transform infrared, attenuated total reflectance (FTIR-ATR) spectroscopy, combined with partial least squares (PLS) regression, accurately predicted solubilization of plant cell wall constituents and NaOH consumption through pretreatment, and overall sugar productions from combined pretreatment and enzymatic hydrolysis. PLS regression models were constructed by correlating FTIR spectra of six raw biomasses (two switchgrass cultivars, big bluestem grass, a low-impact, high-diversity mixture of prairie biomasses, mixed hardwood, and corn stover), plus alkali loading in pretreatment, to nine dependent variables: glucose, xylose, lignin, and total solids solubilized in pretreatment; NaOH consumed in pretreatment; and overall glucose and xylose conversions and yields from combined pretreatment and enzymatic hydrolysis. PLS models predicted the dependent variables with the following values of coefficient of determination for cross-validation (Q2): 0.86 for glucose, 0.90 for xylose, 0.79 for lignin, and 0.85 for total solids solubilized in pretreatment; 0.83 for alkali consumption; 0.93 for glucose conversion, 0.94 for xylose conversion, and 0.88 for glucose and xylose yields. The sugar yield models are noteworthy for their ability to predict overall saccharification through combined pretreatment and enzymatic hydrolysis per mass dry untreated solids without a priori knowledge of the composition of solids. All wavenumbers with significant variable-important-for-projection (VIP) scores have been attributed to chemical features of lignocellulose, demonstrating the models were based on real chemical information. These models suggest that PLS regression can be applied to FTIR-ATR spectra of raw biomasses to rapidly predict effects of pretreatment on solids and on subsequent enzymatic hydrolysis.     

浙江乌岩岭国家级自然保护区叶附生苔类及附主植物多样性

叶附生苔类植物是一类主要生长在热带雨林和亚热带常绿阔叶林维管植物叶片表面的苔类植物, 具有重要的生态价值, 是苔藓植物中最需要关注和保护的一个类群。但由于其个体细小、分类困难等原因, 此前针对我国叶附生苔类植物的采样可能存在低估其多样性的情况。为了解采样方式可能对叶附生苔类植物多样性的影响, 本研究在乌岩岭国家级自然保护区对叶附生苔开展了系统的采样及比较研究。根据叶附生苔附主植物的叶片特性、分布位置等因素, 对保护区内的叶附生苔类植物及附主植物开展沿海拔梯度的系统调查和取样, 分析了叶附生苔类植物和附主植物的多样性及物种组成情况。结果显示, 该保护区共有叶附生苔类植物5科14属49种, 叶附生苔附主植物57科84属119种。与历史数据相比, 本研究区新增叶附生苔2科5属35种, 其中浙江省新记录苔类4种。叶附生苔物种丰富度表现出随海拔升高呈单峰型分布的模式, 在500-900 m海拔段的种数最多。基于叶片数的物种累积曲线及随机抽样分析表明, 该保护区叶附生苔在不同生境及同一附主植物不同叶片间表现出较大的种类组成差异。鉴于本研究采集方法获得的较高叶附生苔物种多样性, 建议在我国叶附生苔多样性其他分布中心开展类似的研究, 以进一步摸清我国叶附生苔类植物物种多样性。