Local visual homing by matched-filter descent in image distances

In natural images, the distance measure between two images taken at different locations rises smoothly with increasing distance between the locations. This fact can be exploited for local visual homing where the task is to reach a goal location that is characterized by a snapshot image: descending in the image distance will lead the agent to the goal location. To compute an estimate of the spatial gradient in the distance measure, its value must be sampled at three noncollinear points. An animal or robot would have to insert exploratory movements into its home trajectory to collect these samples. Here we suggest a method based on the matched-filter concept that allows one to estimate the gradient without exploratory movements. Two matched filters – optical flow fields resulting from translatory movements in the horizontal plane – are used to predict two images in perpendicular directions from the current location. We investigate the relation to differential flow methods applied to the local homing problem and show that the matched-filter approach produces reliable homing behavior on image databases. Two alternative methods that only require a single matched filter are suggested. The matched-filter concept is also applied to derive a home-vector equation for a Fourier-based parameter method.     

Responses of brainstem lateral line units to different stimulus source locations and vibration directions

We recorded responses of lateral line units in the medial octavolateralis nucleus in the brainstem of goldfish, Carassius auratus, to a 50 Hz vibrating sphere and studied how responses were affected by placing the sphere at various locations alongside the fish and by different directions of vibration. In most units (88%), stimulation with the sphere from one or more spatial locations caused an increase and/or decrease in discharge rate. In few units (10%), discharge rate was increased by stimulation from one location and decreased by stimulation from an adjacent location in space. In a minority of the units (2%), changing sphere location did not affect discharge rates but caused a change in phase coupling. Units sensitive to a distinct sphere vibration direction were not found. The data also show that the responses of most brainstem units differ from those of primary afferent nerve fibers. Whereas primary afferents represent the pressure gradient pattern generated by the sphere and thus encode location and vibration direction of a vibrating sphere, most brainstem units do not. This information may be represented in the brainstem by a population code or in higher centers of the ascending lateral line pathway.     

Shifts of Gamma Phase across Primary Visual Cortical Sites Reflect Dynamic Stimulus-Modulated Information Transfer

Distributed neural processing likely entails the capability of networks to reconfigure dynamically the directionality and strength of their functional connections. Yet, the neural mechanisms that may allow such dynamic routing of the information flow are not yet fully understood. We investigated the role of gamma band (50–80 Hz) oscillations in transient modulations of communication among neural populations by using measures of direction-specific causal information transfer. We found that the local phase of gamma-band rhythmic activity exerted a stimulus-modulated and spatially-asymmetric directed effect on the firing rate of spatially separated populations within the primary visual cortex. The relationships between gamma phases at different sites (phase shifts) could be described as a stimulus-modulated gamma-band wave propagating along the spatial directions with the largest information transfer. We observed transient stimulus-related changes in the spatial configuration of phases (compatible with changes in direction of gamma wave propagation) accompanied by a relative increase of the amount of information flowing along the instantaneous direction of the gamma wave. These effects were specific to the gamma-band and suggest that the time-varying relationships between gamma phases at different locations mark, and possibly causally mediate, the dynamic reconfiguration of functional connections.     

Effect of Cercospora zeae-maydis infested maize residue on progress and spread of grey leaf spot of maize in central Uganda

The spread of grey leaf spot caused by Cercospora zeae‐maydis from infested maize residue on the soil surface and progress over time were studied under tropical conditions at two locations in central Uganda, Kabanyolo and Namulonge, using a susceptible local cultivar, LP16. Infested maize residue collected the previous season was used as the inoculum source in varying amounts; 80% coverage, 40% coverage and 0% soil coverage were used to simulate no tillage, minimum tillage and maximum tillage with complete burial of residues. In all the seasons, disease spread was adequately described by a power law model, whereas disease progress over time was equally well represented by both Gompertz and logistic models. The time factor was highly significant (P < 0.05) for disease development, indicating both increases in disease intensity over time and change in gradients with time. The amount of infested residue on the soil surface in the maize planting was highly significant (P < 0.05) for slope (b) and intercept (a) of the linearised disease gradient. The gradient parameter (b) based on the average for the four directions from the residue source ranged from ?0.96 to ?0.08 in the second cropping season of 1999, from ?2.16 to ?0.01 and from ?0.87 to ?0.03 in the first and second seasons of 2000, respectively. The distance from the infested residue significantly affected foliar disease, but the direction from the residue inoculum source did not, nor was the distance by direction interaction significant. However, interactions between amount of residue and distance were significant. Percentage leaf area affected by grey leaf spot, the areas under disease progress curves and disease intercepts decreased with distance at both locations, but rate of disease increase (r) was generally constant with distance from residue source at Kabanyolo, but not at Namulonge. The relationship between disease severity and amount of residue cover appeared to be affected by the level of background inoculum. At Kabanyolo, where little background inoculum was present, differences were detected in disease severity parameters between the no‐residue plots and residue plots, whereas at Namulonge, where high background levels existed, there was no effect of residue on disease.     

Decoding seen and attended motion directions from activity in the human visual cortex

Functional neuroimaging has successfully identified brain areas that show greater responses to visual motion and adapted responses to repeated motion directions. However, such methods have been thought to lack the sensitivity and spatial resolution to isolate direction-selective responses to individual motion stimuli. Here, we used functional magnetic resonance imaging (fMRI) and pattern classification methods to show that ensemble activity patterns in human visual cortex contain robust direction-selective information, from which it is possible to decode seen and attended motion directions. Ensemble activity in areas V1-V4 and MT+/V5 allowed us to decode which of eight possible motion directions the subject was viewing on individual stimulus blocks. Moreover, ensemble activity evoked by single motion directions could effectively predict which of two overlapping motion directions was the focus of the subject's attention and presumably dominant in perception. Our results indicate that feature-based attention can bias direction-selective population activity in multiple visual areas, including MT+/V5 and early visual areas (V1-V4), consistent with gain-modulation models of feature-based attention and theories of early attentional selection. Our approach for measuring ensemble direction selectivity may provide new opportunities to investigate relationships between attentional selection, conscious perception, and direction-selective responses in the human brain.     

Effects of roads on alpine and subalpine plant species distribution along an altitudinal gradient on Mount Norikura, central Japan

We investigated the effects of roads on alpine and subalpine plant species distribution along an altitudinal gradient on Mount Norikura (3026 m a.s.l.), Japan. We examined the vegetation of herb and tree species shorter than 1.3 m along roadsides and adjacent natural vegetation at 200 m intervals between 1600 and 3000 m a.s.l. The timberline was at 2500 m a.s.l. Although the canopy opening was greater at the roadsides than in the natural vegetation, it was similar above the timberline. Soil cover and litter depth of the soil surface were less at roadsides than the natural vegetation, and gravel and rock cover were greater at roadsides. Species composition changed in similar directions from natural vegetation to roadsides along the altitudinal gradient. This direction was related to canopy opening and litter depth. Liliaceae, Ericaceae and Pinaceae were dominant families in the natural vegetation, and Asteraceae and Poaceae were greatest at the roadsides. Roadside plants were mostly herb species, while tree species increased in natural vegetation. Five exotic species were also observed at the roadsides. Sunny plant species gradually increased with altitude in the natural vegetation, indicated by the increase in canopy opening. By contrast, roadside plants were mostly sunny plant species irrespective of altitude. The number of lowland and montane species increased at the roadsides in the subalpine zone. Thus, roads strongly altered species composition of the natural vegetation along the altitudinal gradient probably because of changes in light and soil-surface conditions for growth and seedling establishment.     

Radial electric field and rotation of the ensemble of plasma particles in tokamak

The velocity of macroscopic rotation of an ensemble of charged particles in a tokamak in the presence of an electric field has been calculated in a collisionless approximation. It is shown that the velocity of toroidal rotation does not reduce to a local velocity of electric drift and has opposite directions on the inner and outer sides of the torus. This result is supplemented by an analysis of the trajectories of motion of individual particles in the ensemble, which shows that the passing and trapped particles of the ensemble acquire in the electric field, on the average, different toroidal velocities. For the trapped particles, this velocity is equal to that of electric drift in the poloidal magnetic field, while the velocity of passing particles is significantly different. It is shown that, although the electric-field-induced shift of the boundaries between trapped and passing particles in the phase space depends on the particle mass and charge and is, in the general case, asymmetric, this does not lead to current generation.     

Honeybee navigation: critically examining the role of the polarization compass

Although it is widely accepted that honeybees use the polarized-light pattern of the sky as a compass for navigation, there is little direct evidence that this information is actually sensed during flight. Here, we ask whether flying bees can obtain compass cues derived purely from polarized light, and communicate this information to their nest-mates through the ‘waggle dance’. Bees, from an observation hive with vertically oriented honeycombs, were trained to fly to a food source at the end of a tunnel, which provided overhead illumination that was polarized either parallel to the axis of the tunnel, or perpendicular to it. When the illumination was transversely polarized, bees danced in a predominantly vertical direction with waggles occurring equally frequently in the upward or the downward direction. They were thus using the polarized-light information to signal the two possible directions in which they could have flown in natural outdoor flight: either directly towards the sun, or directly away from it. When the illumination was axially polarized, the bees danced in a predominantly horizontal direction with waggles directed either to the left or the right, indicating that they could have flown in an azimuthal direction that was 90° to the right or to the left of the sun, respectively. When the first half of the tunnel provided axial illumination and the second half transverse illumination, bees danced along all of the four principal diagonal directions, which represent four equally likely locations of the food source based on the polarized-light information that they had acquired during their journey. We conclude that flying bees are capable of obtaining and signalling compass information that is derived purely from polarized light. Furthermore, they deal with the directional ambiguity that is inherent in polarized light by signalling all of the possible locations of the food source in their dances, thus maximizing the chances of recruitment to it.     

Studies on the formation mechanism and the structure of the anisotropic collagen gel prepared by dialysis-induced anisotropic gelation

We have found that dialysis of 5 mg/mL collagen solution into the phosphate solution with a pH of 7.1 and an ionic strength of 151 mM [corrected] at 25 °C results in a collagen gel with a birefringence and tubular pores aligned parallel to the growth direction of the gel. The time course of averaged diameter of tubular pores during the anisotropic gelation was expressed by a power law with an exponent of 1/3, suggesting that the formation of tubular pores is attributed to a spinodal decomposition-like phase separation. Small angle light scattering patterns and high resolution confocal laser scanning microscope images of the anisotropic collagen gel suggested that the collagen fibrils are aligned perpendicular to the growth direction of the gel. The positional dependence of the order parameter of the collagen fibrils showed that the anisotropic collagen gel has an orientation gradient.     

Novel method to correct displacement profile images and calculate flow vector fields using saturation-tagging MR imaging.

Saturation-tagging Magnetic Resonance (MR) imaging provides a simple and robust means to directly visualize displacement profiles within fluid flow fields. Although useful for velocity quantitation as well as for qualitative depiction of flow patterns in certain well-defined flow fields, the technique is prone to distortions due to oblique flow (misregistration artifact) and ambiguity of fluid vector trajectories in complex flow situations. A novel method is proposed whereby two images are acquired, differing in the temporal position of the phase encoding gradient. Theoretical analysis shows that from the paired images, distortion of the two-dimensional displacement profile can be corrected and fluid velocity vectors extracted, even if the flow directions are unknown. In the simpler case of flow oblique to the gradient principal axes, but with a known trajectory, only one image is necessary to correct the displacement profile distortion and extract the velocity information. MRI experiments in a straight tube model have been carried out to evaluate the feasibility of this method. Good agreement is achieved between the results from MR imaging and those predicted via computer simulation.     

Local direction change of surface gliding microtubules

In vitro gliding assay, microtubule translocation by kinesin motor proteins on a surface, has been used as an engineering tool in analyte detection, molecular cargo transport, and other applications. Although controlling the moving direction is often necessary to realize these applications, current direction control methods focus largely on lithographic microfabrication of tracks or external fields on the microtubules. These methods are effective, but are relatively complicated. In addition, they cannot target particular microtubules without affecting others. In this study, we propose a facile approach that can make local direction changes for selected microtubules using a polystyrene particle as a circular motion center and a DNA double helix with streptavidin as a capture arm. The DNA arm captures a microtubule in the close proximity of the immobilized particle via biotin–streptavidin interaction and changes the moving direction ~10° on average. In contrast, no significant direction changes are observed other than random variations with streptavidin-less DNA arms (normal distribution centered at 0°), similar to regular motility assay. The particle-assisted local direction change scheme is compared with a flow field-based ensemble method. The combination of flow and kinesin interactions with each microtubule exerts a force to change the direction, ultimately aligning it to the flow field, regardless of its initial direction. A simple model based on the force balance predicts the time needed for such an alignment. Overall, the particle-based local scheme is distinct and different from ensemble methods such as crossflow that changes directions of all microtubules in the field, thus offering unique utility in engineering applications.     

In vivo determination of normal and anterior cruciate ligament-deficient knee kinematics

The objective of the current study was to use fluoroscopy to accurately determine the three-dimensional (3D), in vivo, weight-bearing kinematics of 10 normal and five anterior cruciate ligament deficient (ACLD) knees. Patient-specific bone models were derived from computed tomography (CT) data. 3D computer bone models of each subject's femur, tibia, and fibula were recreated from the CT 3D bone density data. Using a model-based 3D-to-2D imaging technique registered CT images were precisely fit onto fluoroscopic images, the full six degrees of freedom motion of the bones was measured from the images. The computer-generated 3D models of each subject's femur and tibia were precisely registered to the 2D digital fluoroscopic images using an optimization algorithm that automatically adjusts the pose of the model at various flexion/extension angles. Each subject performed a weight-bearing deep knee bend while under dynamic fluoroscopic surveillance. All 10 normal knees experienced posterior femoral translation of the lateral condyle and minimal change in position of the medial condyle with progressive knee flexion. The average amount of posterior femoral translation of the lateral condyle was 21.07 mm, whereas the average medial condyle translation was 1.94 mm, in the posterior direction. In contrast, all five ACLD knees experienced considerable change in the position of the medial condyle. The average amount of posterior femoral translation of the lateral condyle was 17.00 mm, while the medial condyle translation was 4.65 mm, in the posterior direction. In addition, the helical axis of motion was determined between maximum flexion and extension. A considerable difference was found between the center of rotation locations of the normal and ACLD subjects, with ACLD subjects exhibiting substantially higher variance in kinematic patterns.     

A musculoskeletal model of the equine forelimb for determining surface stresses and strains in the humerus-part II. Experimental testing and model validation

The first objective of this study was to experimentally determine surface bone strain magnitudes and directions at the donor site for bone grafts, the site predisposed to stress fracture, the medial and cranial aspects of the transverse cross section corresponding to the stress fracture site, and the middle of the diaphysis of the humerus of a simplified in vitro laboratory preparation. The second objective was to determine whether computing strains solely in the direction of the longitudinal axis of the humerus in the mathematical model was inherently limited by comparing the strains measured along the longitudinal axis of the bone to the principal strain magnitudes and directions. The final objective was to determine whether the mathematical model formulated in Part I [Pollock et al., 2008, ASME J. Biomech. Eng., 130, p. 041006] is valid for determining the bone surface strains at the various locations on the humerus where experimentally measured longitudinal strains are comparable to principal strains. Triple rosette strain gauges were applied at four locations circumferentially on each of two cross sections of interest using a simplified in vitro laboratory preparation. The muscles included the biceps brachii muscle in addition to loaded shoulder muscles that were predicted active by the mathematical model. Strains from the middle grid of each rosette, aligned along the longitudinal axis of the humerus, were compared with calculated principal strain magnitudes and directions. The results indicated that calculating strains solely in the direction of the longitudinal axis is appropriate at six of eight locations. At the cranial and medial aspects of the middle of the diaphysis, the average minimum principal strain was not comparable to the average experimental longitudinal strain. Further analysis at the remaining six locations indicated that the mathematical model formulated in Part I predicts strains within +/-2 standard deviations of experimental strains at four of these locations and predicts negligible strains at the remaining two locations, which is consistent with experimental strains. Experimentally determined longitudinal strains at the middle of the diaphysis of the humerus indicate that tensile strains occur at the cranial aspect and compressive strains occur at the caudal aspect while the horse is standing, which is useful for fracture fixation.     

Studies of directional sensitivity of neurons in the cat primary auditory cortex

A set of impulsive transient signals has been synthesized for earphone delivery whose waveform and amplitude spectra, measured at the eardrum, mimic those of sounds arriving from a free-field source. The complete stimulus set forms a "virtual acoustic space" (VAS) for the cat. VAS stimuli are delivered via calibrated earphones sealed into the external meatus in cats under barbiturate anesthesia. Neurons recorded extracellularly in primary (AI) auditory cortex exhibit sensitivity to the direction of sound in VAS. The aggregation of effective sound directions forms a virtual space receptive field (VSRF). At about 20 dB above minimal threshold, VSRFs recorded in otherwise quiet and anechoic space fall into categories based on spatial dimension and location. The size, shape and location of VSRFs remain stable over many hours of recording and are found to be shaped by excitatory and inhibitory interactions of activity arriving from the two ears. Within the VSRF response latency and strength vary systematically with stimulus direction. In an ensemble of such neurons these functional gradients provide information about stimulus direction, which closely accounts for a human listener's spatial acuity. Raising stimulus intensity, introducing continuous background noise or presenting a conditioning stimulus all influence the extent of the VSRF but leave intact the gradient structure of the field. These and other findings suggest that such functional gradients in VSRFs of ensembles of AI neurons are instrumental in coding sound direction and robust enough to overcome interference from competing environmental sounds.     

Longitudinal and transverse deformation of human Achilles tendon induced by isometric plantar flexion at different intensities

The present study determined in vivo deformation of the entire Achilles tendon in the longitudinal and transverse directions during isometric plantar flexions. Twelve young women and men performed isometric plantar flexions at 0% (rest), 30%, and 60% of the maximal voluntary contraction (MVC) while a series of oblique longitudinal and cross-sectional magnetic resonance (MR) images of the Achilles tendon were taken. At the distal end of the soleus muscle belly, the Achilles tendon was divided into the aponeurotic (ATapo) and the tendinous (ATten) components. The length of each component was measured in the MR images. The widths of the Achilles tendon were determined at 10 regions along ATapo and at four regions along ATten. Longitudinal and transverse strains were calculated as changes in relative length and width compared with those at rest. The ATapo deformed in both longitudinal and transverse directions at 30%MVC and 60%MVC. There was no difference between the strains of the ATapo at 30%MVC and 60%MVC either in the longitudinal (1.1 and 1.6%) or transverse (5.0～11.4 and 5.0～13.9%) direction. The ATten was elongated longitudinally (3.3%) to a greater amount than ATapo, while narrowing transversely in the most distal region (-4.6%). The current results show that the magnitude and the direction of contraction-induced deformation of Achilles tendon are different for the proximal and distal components. This may be related to the different functions of Achilles tendon, i.e., force transmission or elastic energy storage during muscle contractions.     

Scene content selected by active vision

The primate visual system actively selects visual information from the environment for detailed processing through mechanisms of visual attention and saccadic eye movements. This study examines the statistical properties of the scene content selected by active vision. Eye movements were recorded while participants free-viewed digitized images of natural and artificial scenes. Fixation locations were determined for each image and image patches were extracted around the observed fixation locations. Measures of local contrast, local spatial correlation and spatial frequency content were calculated on the extracted image patches. Replicating previous results, local contrast was found to be greater at the points of fixation when compared to either the contrast for image patches extracted at random locations or at the observed fixation locations using an image-shuffled database. Contrary to some results and in agreement with other results in the literature, a significant decorrelation of image intensity is observed between the locations of fixation and other neighboring locations. A discussion and analysis of methodological techniques is given that provides an explanation for the discrepancy in results. The results of our analyses indicate that both the local contrast and correlation at the points of fixation are a function of image type and, furthermore, that the magnitude of these effects depend on the levels of contrast and correlation present overall in the images. Finally, the largest effect sizes in local contrast and correlation are found at distances of approximately 1 deg of visual angle, which agrees well with measures of optimal spatial scale selectivity in the visual periphery where visual information for potential saccade targets is processed.     

Relative contribution of dispersal and natural selection to the maintenance of a hybrid zone in Littorina

Habitat preference behavior may play an important role in nonallopatric speciation. However, most examples of habitat preference contributing to differentiation within natural populations correspond to parasites or herbivores living in the discrete environments constituted by their animal or plant hosts. In the present study we investigated migration guided by habitat preference in the intertidal snail Littorina saxatilis in a hybrid zone associated with an ecotone across the shore, which is therefore a continuously varying environment. First, we found evidence for this behavior in one of the two locations studied. Second, we made reciprocal transplants to suppress the phenotypic gradient observed across the hybrid zone and measured the relative contributions of selection and migration to its regeneration. Selection played an important role at the two locations studied, but migration was only important at one, where it accounted for between a third and a half of the regenerated gradient. This overall minor effect of migration was relevant for theoretical models dealing with nonallopatric speciation, because it suggested that variation for habitat preference did not have an important role in the initiation of the differentiation process. The preference behavior observed in the hybrid zone would have evolved secondarily, as a consequence of habitat-dependent fitness differences between phenotypes.     

Convergent patterns of long-distance nocturnal migration in noctuid moths and passerine birds

Vast numbers of insects and passerines achieve long-distance migrations between summer and winter locations by undertaking high-altitude nocturnal flights. Insects such as noctuid moths fly relatively slowly in relation to the surrounding air, with airspeeds approximately one-third of that of passerines. Thus, it has been widely assumed that windborne insect migrants will have comparatively little control over their migration speed and direction compared with migrant birds. We used radar to carry out the first comparative analyses of the flight behaviour and migratory strategies of insects and birds under nearly equivalent natural conditions. Contrary to expectations, noctuid moths attained almost identical ground speeds and travel directions compared with passerines, despite their very different flight powers and sensory capacities. Moths achieved fast travel speeds in seasonally appropriate migration directions by exploiting favourably directed winds and selecting flight altitudes that coincided with the fastest air streams. By contrast, passerines were less selective of wind conditions, relying on self-powered flight in their seasonally preferred direction, often with little or no tailwind assistance. Our results demonstrate that noctuid moths and passerines show contrasting risk-prone and risk-averse migratory strategies in relation to wind. Comparative studies of the flight behaviours of distantly related taxa are critically important for understanding the evolution of animal migration strategies.     

A common frame of reference for learned and communicated vectors in honeybee navigation

Humans draw maps when communicating about places or verbally describe routes between locations. Honeybees communicate places by encoding distance and direction in their waggle dances. Controversy exists not only about the structure of spatial memory but also about the efficiency of dance communication. Some of these uncertainties were resolved by studies in which recruits' flights were monitored using harmonic radar. We asked whether the two sources of vector information--the previously learned flight vector to a food source and the communicated vector--are represented in a common frame of spatial reference. We found that recruits redirect their outbound flights and perform novel shortcut flights between the communicated and learned locations in both directions. Guidance by beacons at the respective locations or by the panorama of the horizon was excluded. These findings indicate a spatial reference based on either large-scale vector integration or a common geocentric map-like spatial memory. Both models predict a memory structure that stores the spatial layout in such a way that decisions are made according to estimated distances and directions. The models differ with respect to the role of landmarks and the time of learning of spatial relations.     

Multimodal nonlinear optical imaging of collagen arrays

We report multimodal nonlinear optical imaging of fascia, a rich collagen type I sheath around internal organs and muscle. We show that second harmonic generation (SHG), third harmonic generation (THG) and Coherent anti-Stokes Raman scattering (CARS) microscopy techniques provide complementary information about the sub-micron architecture of collagen arrays. Forward direction SHG microscopy reveals the fibrillar arrangement of collagen type I structures as the main matrix component of fascia. SHG images detected in the backward direction as well as images of forward direction CARS microscopy show that the longitudinal collagen fiber bundles are further arranged in sheet-like bands. Forward-THG microscopy reveals the optically homogeneous content of the collagen sheet on a spatial scale of the optical wavelength. This is supported by the fact that the third harmonic signal is observed only at the boundaries between the sheets as well as by the CARS data obtained in both directions. The observations made with THG and CARS microscopy are explained using atomic force microscopy images.