Phylogenetic relationships among genera of Aphidiinae (Hymenoptera: Braconidae) based on DNA sequence of the mitochondrial 16S rRNA gene

Phylogenetic relationships among forty‐nine taxa representing twenty‐four genera of Aphidiinae (Hymenoptera: Braconidae) were investigated using DNA sequence of a portion of the mitochondrial 16S rRNA gene and parsimony analysis. Seven species in six other subfamilies of Braconidae were used as outgroup. The results suggested that members of Aphidiinae are monophyletic. The basal lineage of Aphidiinae was Aclitus in weighted and unweighted parsimony analyses and Praini was basal relative to Ephedrini. With the exception of Pauesia and Aphidius, all genera were monophyletic. The results support generic status for Euaphidius, but not for Lysaphidus. Diaeretus leucopterus was internal to a clade composed of three Pauesia species, suggesting that the latter genus may be paraphyletic. A combined analysis that included DNA sequence of 16S rRNA, NADH1 dehydrogenase and 28S rRNA resulted in more robust cladograms with topologies similar to those inferred from the 16S rRNA gene sequence alone. The results are compared to previously proposed phylogenies of Aphidiinae based on morphological and molecular characters.     

Nomimoscolex semenasae n sp (proteocephalidea: Monticelliidae), a cestode parasite of Diplomystes viedmensis (Pisces: Siluriformes) from the Patagonian region of Argentina

Nomimoscolex semenasae n. sp. is described from the primitive fish Diplomystes viedmensis (Siluriformes) from the Patagonian region of Argentina. The new species is placed in Nomimoscolex because of the cortical position of the vitelline follicles, medullary position of the testes, ovary and uterus, and having a scolex with four uniloculate suckers. N. semenasae differs from all other species in the genus by the following combination of characters: (1) apical organ absent; (2) strobila acraspedote; (3) vagina anterior or posterior to cirrus-sac and lacking a sphincter; (4) testes in one irregular layer and in two fields connected anteriorly; (5) uterine stem cortical in immature proglottides, growing from cortical stem into medullary region in mature proglottides; (6) long uteroduct; and (7) presence of spiniform microtriches on all regions of the scolex, proliferation zone and immature proglottis. This is the first record of a proteocephalidean tapeworm in D. viedmensis and in the family Diplomystidae.     

An integrative approach to the evolution of shrimps of the genus Palaemon (Decapoda,Palaemonidae)

Shrimps of the genus Palaemon Weber, 1795 comprise of 86 species with a wide morphological and ecological variability along the tropical and temperate regions. Studies based on molecular data have indicated that despite a recent taxonomic rearrangement, it may remain not monophyletic. On the other hand, cladistic, morphological analyses have suggested the presence of synapomorphies, implying a natural status for the genus. In this work, a broad taxonomic and molecular sampling is applied to verify whether Palaemon is a monophyletic taxon and, based on the recovered phylogeny, identify geographical and morphological patterns related to the lineages. Partial sequences of 16S rRNA, histone H3 and 18S rRNA from 60 species of Palaemon and 15 species from other genera of Palaemonidae were analysed. In addition, previously used characters as well as novel diagnostic characters were scrutinized. The present phylogeny indicates that the species of Palaemon fall into three distinct lineages and that the colonization of America and Europe likely occurred multiple times. Morphological characters allow for the identification of at least four monophyletic groups in Palaemon; two of which are monospecific at the moment. Based on the present results, it may become necessary to establish two new genera (to accommodate Palaemon concinnus and Palaemon mercedae, respectively), as well as re‐erect the genus Alaocaris Holthuis, 1949 for Palaemon antrorum, potentially including a further six American species.     

Phylogeny of the American silverfish Cubacubaninae (Hexapoda: Zygentoma: Nicoletiidae): a combined approach using morphology and five molecular loci

Relationships within the subfamily Cubacubaninae, the dominant subfamily of Nicoletiidae in America, are appraised based on parsimony analysis of 20 morphological characters and sequence data from five loci (nuclear 18S and 28S rRNA, mitochondrial 16S rRNA, nuclear protein coding gene histone H3, and mitochondrial protein coding gene cytochrome c oxidase subunit I). The data, analyzed under direct optimization for a range of analytical parameter sets, indicated that species may show some biogeographical structure. It also indicated that the presence of articulated submedian appendages on urosternum IV is not a valid discriminating character in taxonomy. Species within the traditional genera Anelpistina, Cubacubana and Neonicoletia were found to belong to a group in which no clear morphological or molecular distinction was present. It is proposed that members of these three genera should be united within a single taxon. On the contrary, the genus Prosthecina is well supported by the data. © The Willi Hennig Society 2006.     

Morphological and molecular description of new species of squat lobster (Crustacea: Decapoda: Galatheidae) from the Solomon and Fiji Islands (South‐West Pacific)

The family Galatheidae is among the most diverse families of anomuran decapod crustaceans, and the South‐West Pacific is a biodiversity hot spot for these squat lobsters. Attempts to clarify the taxonomic and evolutionary relationships of the Galatheidae on the basis of morphological and molecular data have revealed the existence of several cryptic species, differentiated only by subtle morphological characters. Despite these efforts, however, relationships among genera are poorly understood, and the family is in need of a detailed systematic review. In this study, we assess material collected in different surveys conducted in the Solomon Islands, as well as comparative material from the Fiji Islands, by examining both the morphology of the specimens and two mitochondrial markers (cytochrome oxidase subunit I, COI, and 16S rRNA). These two sources of data revealed the existence of eight new species of squat lobster, four of which were ascribed to the genus Munida, two to the genus Paramunida, one to the genus Plesionida, and the last species was ascribed to the genus Agononida. These eight species are described along with phylogenetic relationships at the genus level. Our findings support the taxonomic status of the new species, yet the phylogenetic relationships are not yet fully resolved. Further molecular analysis of a larger data set of species, and more conserved genes, will help clarify the systematics of this group. © 2009 The Linnean Society of London, Zoological Journal of the Linnean Society, 2009, 156 , 465–493.     

Cladistic analysis of morphological characters in the eulophine tribe Cirrospilini (Hymenoptera: Eulophidae)

A total of 56 morphological characters were analyzed for 53 cirrospiline species that represent all of the 17 described genera of the tribe. The other taxa of the Eulophinae included in the analysis were six species of six representative genera in the tribe Eulophini, a species of Elasmus (the only genus comprising the tribe Elasmini), and a species of Trichospilus (unplaced). Trichospilus and two of the six genera of Eulophini examined were placed within Cirrospilini. Monophyly of Cirrospilini (when these two genera of Eulophini and Trichospilus are included) and of the cirrospiline genera for which more than one species were examined was supported, but the relationships between the genera were poorly resolved. An exception was Cirrospilus, the largest genus in the Cirrospilini, monophyly of which was not supported to any extent.     

Molecular phylogeny of Eastern Pacific porcelain crabs, genera Petrolisthes and Pachycheles, based on the mtDNA 16S rDNA sequence: phylogeographic and systematic implications

Porcelain crabs, genera Petrolisthes and Pachycheles, are diverse and abundant members of the eastern Pacific near-shore decapod crustacean community. Morphology-based taxonomic analyses of these crabs have determined groupings of affiliated species, but phylogenetic relationships remain unknown. We used sequence data from the mitochondrial 16S rRNA gene of 46 species of eastern Pacific porcelain crabs to perform phylogenetic analyses by distance and parsimony methods. Our results are used to compare the taxonomic significance of morphological and molecular characters, to examine sequence divergence rates of crab 16S rRNA genes, and to analyze the phylogeographic history of these crabs. Our phylogenetic trees indicate that the genus Petrolisthes is divided into two main clades, reflecting morphological features. One clade contains primarily tropical species, and the other contains species from throughout the eastern Pacific, as well as species in the genera Allopetrolisthes and Liopetrolisthes. Phylogenetic trees of Pachycheles suggest an antitropical distribution; north and south temperate species form one clade and tropical species form a second clade. Sequence divergence rates of the 16S rRNA gene from three pairs of geminate species can be used to date divergence times, and we discuss porcelain crab phylogeographic patterns in relation to paleogeographic events.     

Congruence between molecular phylogeny and cuticular design in Echiniscoidea (Tardigrada,Heterotardigrada)

Although morphological characters distinguishing echiniscid genera and species are well understood, the phylogenetic relationships of these taxa are not well established. We thus investigated the phylogeny of Echiniscidae, assessed the monophyly of Echiniscus, and explored the value of cuticular ornamentation as a phylogenetic character within Echiniscus. To do this, DNA was extracted from single individuals for multiple Echiniscus species, and 18S and 28S rRNA gene fragments were sequenced. Each specimen was photographed, and published in an open database prior to DNA extraction, to make morphological evidence available for future inquiries. An updated phylogeny of the class Heterotardigrada is provided, and conflict between the obtained molecular trees and the distribution of dorsal plates among echiniscid genera is highlighted. The monophyly of Echiniscus was corroborated by the data, with the recent genus Diploechiniscus inferred as its sister group, and Testechiniscus as the sister group of this assemblage. Three groups that closely correspond to specific types of cuticular design in Echiniscus have been found with a parsimony network constructed with 18S rRNA data. © 2013 The Linnean Society of London     

New considerations on the phylogeny of cyrtophorian ciliates (Protozoa,Ciliophora): expanded sampling to understand their evolutionary relationships

To rationalize the confusing relationships among the cyrtophorian ciliates, we expanded the taxon sampling by sequencing the small subunit ribosomal RNA (SSU rRNA) gene of representatives of 12 genera (20 species, 23 new sequences). The SSU rRNA sequences of Spirodysteria, Agnathodysteria, Brooklynella and Odontochlamys are reported for the first time. Phylogenetic trees were constructed, and secondary structures of variable region 4 (V4) of all genera for which SSU rRNA gene sequence data are available were predicted. The results indicate that (i) Brooklynella is likely an intermediate taxon between Dysteriidae and Hartmannulidae; (ii) the genus Dysteria is paraphyletic with Spirodysteria and Mirodysteria nested within it; (iii) the genus Agnathodysteria is well separated from Dysteria based on both molecular and morphological data; and (iv) Trithigmostoma is a basal genus of Chilodonellidae, based on both the morphological and molecular data.     

Molecular phylogeny and morphological analysis resolve a long‐standing controversy over generic concepts in Ecdyonurinae mayflies (Ephemeroptera: Heptageniidae)

Heptageniidae is a species‐rich mayfly family (Ephemeroptera), whose taxonomy and phylogeny have been based almost exclusively on traditional morphological studies. Inconsistent use of diagnostic characters and the general lack of molecular studies have led to vague generic concepts, and the phylogenetic relationships among taxa in the family remain unclear. Afronurus Lestage is an Old World heptageniid genus of 66 species. The generic assignment of two species within this genus, A. kugleri Demoulin and A. zebratus (Hagen), has been the subject of much debate, because they share many apomorphic features that distinguish them from other congeners. We combined a thorough morphological study of all life stages of 28 representative heptageniid species with a molecular phylogenetic analysis of four mitochondrial and nuclear markers to resolve the generic position of A. kugleri and A. zebratus as well as the integrity of Afronurus and related genera. Our results confirm the monophyly of Afronurus and Electrogena and support the assignment of A. kugleri and A. zebratus to a newly described genus, Anapos Yanai & Sartori gen.n . We provide clear, diagnostic morphological characters for the genus and discuss the need for a thorough revision of generic concepts in the subfamily Ecdyonurinae. This published work has been registered in ZooBank, http://zoobank.org/urn:lsid:zoobank.org:pub:075E40C6-BAFE-4184-A2C2-E3BCFBC0BC15 .     

Recognition of a species-poor, geographically restricted but morphologically diverse Cape lineage of diving beetles (Coleoptera: Dytiscidae: Hyphydrini)

Aim To establish the phylogeny and geographical origin of the genera of the diving beetle tribe Hyphydrini in order to investigate the origin of differences in geographical range size, intrageneric species‐richness and morphological disparity. In particular, we tested the hypothesis that the geographically restricted, species‐poor and morphologically deviating genera found in the Cape Region of South Africa are a paraphyletic pool of ‘primitive’ Hyphydrini, from which the morphologically more uniform, species‐rich and geographically widespread genera have originated. Location Worldwide, with special reference to the Cape Region of South Africa. Methods We constructed a genus‐level molecular phylogeny of 10 of the 14 known genera of Hyphydrini, including the five endemic to the Cape Region, using sequences from four gene fragments (two mitochondrial, rrnL and cox1; and two nuclear, 18S rRNA and histone 3, c. 2200 bp). Phylogenies were built with Bayesian methods, and linearized using penalized likelihood. Morphological disparity was characterized by correspondence analysis of a data matrix of 21 binary characters. We compare morphological disparity among groups using distance to the global and local centroids and the total range of morphospace occupied. Geographical range was estimated using the number of 6° longitude × 8° latitude Universal Transverse Mercator squares known to contain any species of each genus. Results Hyphydrini is made up of four well supported clades of similar relative genetic divergence: (1) Hyphydrus (Old World plus Australasia, 133 species), (2) the five endemic genera of the Cape Region, sister to Hovahydrus (Madagascar) (10 species), (3) Desmopachria (America, 92 species), and (4) two Oriental genera (Microdytes and Allopachria, 68 species). The morphological disparity within the Cape Region lineage has apparently increased with time, with the two genera closest to the global centroid paraphyletic and basal with respect to the three more recent, morphologically deviating genera. Differences in the number of species between each of the four lineages were not significant. The correlation between the number of species in each lineage and geographical range extent was highly significant, with the low species number of the Cape Region (six) well within the 95% confidence interval of the regression. Main conclusions Contrary to expectations, the species‐poor, morphologically deviating endemic genera of the Cape Region are not a ‘primitive’ relictual pool from which the widespread, species‐rich and morphologically uniform genera have originated. The morphological disparity within the Cape lineage has increased with time, and the apparent lack of species‐level diversification disappears when species–area relationships are considered. A major unanswered question is why one of the four main lineages of Hyphydrini has remained restricted to a very reduced area (the Cape Region), but despite this evolved the highest degree of morphological diversity seen in the tribe.     

Species diversity of Onchidiidae (Eupulmonata: Heterobranchia) on the mainland of China based on molecular data

The identification of members of the Onchidiidae is based on morphological characters; this is often time-consuming and can be inconclusive. In order to explore the species diversity of onchidiids in China, we provide a phylogeny constructed using partial sequences of two mitochondrial genes (16S rRNA and COI) and one nuclear ribosomal RNA gene (28S rRNA) from 32 samples comprising five genera. The topology, using both Bayesian and Maximum Likelihood inference methods, showed that the taxa clustered in two main groups of six species, one of which included Platevindex mortoni, Platevindex sp. and Onchidium ‘struma’; the other included Paraoncidium reevesii, Onchidella sp. and Peronia verruculata. It is clear that COI will be useful in discriminating onchidiid species-group taxa.     

Unexpected distribution patterns of Carduiceps feather lice (Phthiraptera: Ischnocera: Philopteridae) on sandpipers (Aves: Charadriiformes: Scolopacidae)

The louse genus Carduiceps Clay & Meinertzhagen, 1939 is widely distributed on sandpipers and stints (Calidrinae). The current taxonomy includes three species on the Calidrinae (Carduiceps meinertzhageni, Carduiceps scalaris, Carduiceps zonarius) and four species on noncalidrine hosts. We estimated a phylogeny of four of the seven species of Carduiceps (the three mentioned above and Carduiceps fulvofasciatus) from 13 of the 29 hosts based on three mitochondrial loci, and evaluated the relative importance of flyway differentiation (same host species has different lice along different flyways) and flyway homogenization (different host species have the same lice along the same flyway). We found no evidence for either process. Instead, the present, morphology‐based, taxonomy of the genus corresponds exactly to the gene‐based phylogeny, with all four included species monophyletic. Carduiceps zonarius is found both to inhabit a wider range of hosts than wing lice of the genus Lunaceps occurring on the same group of birds, and to occur on Calidris sandpipers of all sizes, both of which are unexpected for a body louse. The previously proposed family Esthiopteridae is found to be monophyletic with good support. The concatenated dataset suggests that the pigeon louse genus Columbicola may be closely related to the auk and diver louse genus Craspedonirmus. These two genera share some morphological characters with Carduiceps, but no support was obtained for grouping these three genera together. Based on mitochondrial data alone, the relationships among genera within this proposed family cannot be properly assessed, but some previously suggested relationships within this proposed family are confirmed.     

Genera and species of Baetidae in Japan: <Emphasis Type="Italic">Nigrobaetis,Alainites, Labiobaetis</Emphasis>, and <Emphasis Type="Italic">Tenuibaetis</Emphasis> n. stat. (Ephemeroptera)

We describe morphological characters of the genera Nigrobaetis, Alainites, Labiobaetis, and Tenuibaetis n. stat. and provide generic situations of six Japanese species: Nigrobaetis chocoratus n. comb., N. sacishimensis n. comb., Alainites atagonis, A. florens, A. yoshinensis, and Tenuibaetis pseudofrequentus. To evaluate the polarities of the morphological characters and the monophyly of Nigrobaetis, Alainites, Labiobaetis, and Tenuibaetis, character states of these four genera were compared with the genus Cloeon as an outgroup. Labiobaetis is considered to be a monophyletic group supported by a wide paraglossa. Tenuibaetis is a monophyletic group that is distinguishable from the related genera by robust setae with a medial ridge on the dorsomedian surface of the nymphal femur. We did not find any synapomorphic characters of Nigrobaetis or Alainites. Although we tentatively treat Nigrobaetis and Alainites as distinct genera, they are considered to be paraphyletic taxa.     

The genus Cyclops (Copepoda,Cyclopoida) in Europe

Although copepods of the genus Cyclops are among the most common and dominant plankton taxa of lakes in the northern temperate zone, their taxonomy is still unclear. We analysed an extensive array of Cyclops populations from Europe by means of molecular methods and evaluated morphological characters. Altogether, 68 populations of Cyclops species were sampled, assigned to morphospecies and sequenced for the 12S rRNA gene. Selected populations of each morphospecies were additionally sequenced for three mitochondrial (16S rRNA, cytochrome b, COI) and two nuclear genes (18S rRNA, ITS1) and analysed for micromorphological traits. Our analysis revealed fifteen lineages that can be regarded as separate species. Thirteen of these match currently accepted species, while the remaining two lineages were distinct from the other described species. Thus, their taxonomic status is open to further studies. Besides taxonomy, our study gives new insights into the ecology, distribution and phylogenetic relationships of these species. Finally, a set of morphological traits was selected to facilitate identification.