Antimicrobial efficacy of extracts of Saudi Arabian desert Terfezia claveryi truffles

BackgroundTerfezia claveryi truffles are known for their nutritional value and have been considered among traditional treatments for ophthalmic infections and ailments.ObjectivesWe sought to investigate the in vitro antimicrobial efficacy of several T. claveryi extracts from Saudi Arabia. Certain pathogenic fungi and gram-negative and gram-positive bacteria were included.MethodsDry extracts were prepared using methanol, ethyl acetate, and distilled water, while the latter was used for preparing fresh extracts. The extracts were microbiologically evaluated through the disc-diffusion agar method; the zones of inhibition of microbial growth were measured post-incubation. The minimum bactericidal concentration (MBC) and minimum inhibitory concentration (MIC) were determined in Müller-Hinton Broth through the microdilution susceptibility method. anti-biofilm activity was assessed for potent extracts.ResultsDry extracts showed potent activity (>16-mm inhibition zones) against gram-positive (Bacillus subtilis IFO3007 and Staphylococcus aureus IFO3060) and gram-negative (Pseudomonas aeruginosa IFO3448 and Escherichia coli IFO3301) bacteria. The activity against fungi was moderate (12–16-mm inhibition zones) for both Aspergillus oryzae IFO4177 and Candida albicans IFO0583; there was no activity against Aspergillus niger IFO4414 growth. Methanolic extract had the lowest MIC and MBC, exhibiting remarkable activity against B. subtilis growth. Fresh extract showed moderate activity against bacterial growth and inactivity against fungal growth. Methanolic extract showed potent anti-biofilm activity (IC₅₀, 2.0 ± 0.18 mg/mL) against S. aureus.ConclusionsT. claveryi extracts showed antibacterial effects potentially suitable for clinical application, which warrants further in-depth analysis of their individual isolated compounds.     

Coffee production in southern Saudi Arabian highlands: Current status and water conservation

Work aimed at assessing status and introducing water conservation regimes for coffee production in southern Saudi Arabian highlands. Data on farm locations, altitudes, areas, practices, irrigation, tree density, and annual coffee production were analyzed. Field experiment using chlorophyll fluorescence and different irrigation regimes was conducted to examine effects of reducing irrigation frequency on photosynthesis. Results indicated that Coffea arabica L. is commonly grown at altitudes of 1300–1400 m. Plants grown at 4–6 Trees m^?2 using 100 kg ha^?1 mineral fertilizer produce an average of 3 t ha^?1. High frequency 2-day-intervals irrigation regime practiced by farmers during the dry season presents ecological challenge to limited local artesian water resources. Changes in chlorophyll fluorescence under 14-day-intervals irrigation regime initiated water stress that markedly inhibited Photosystem II efficiency and quantum yield and increased non-photochemical energy dissipation. Applying a 7-day-intervals irrigation regime induced less inhibitory effects on Photosystem II. Results also indicated that shifting from 2-day-intervals irrigation regime to 7-day-intervals regime improves coffee agroecology and directs coffee production towards sustainability.     

Preliminary palynological investigation of Saudi Arabian Upper Ordovician glacial sediments

An Ordovician stratigraphically admixed palynomorph assemblage that contains palynomorphs eroded from Middle through Upper Ordovician strata characterizes the Hawban Member (restricted) of the Sarah Formation in central Saudi Arabia. This distinctive assemblage, combined with detailed sedimentology, helps identify the presence of Hirnantian Gondwanan glacial sediments on the Arabian Plate. Similar Ordovician admixed assemblages have been recognized from Upper Ordovician glacial sediments elsewhere along the Gondwanan margin. Within Saudi Arabia the composition of reworked assemblages depends upon the stratigraphic succession exposed to glacial erosion. Sylvanidium? hawbanense, which is one of the acritarchs found in glacial sediments, is newly described from Arabian Upper Ordovician strata.     

Plasma and urinary selenium in Saudi Arabian patients with dilated cardiomyopathy

We measured selenium (Se) levels in the urine and blood plasma samples of 72 Saudi Arabian patients with dilated cardiomyopathy (DCM) and 70 control subjects of the same origin. To correct for differences in the hydration state of the subjects, the selenium concentration for each urine sample was normalized by dividing it by the concentration of creatinine (CREAT) in the same sample. The median (and range) of the values found for the concentration of Se in plasma, urine, and normalized concentration in urine for the control subjects was 1.306 (0.66–2.50) μM, 0.478 (0.05–2.00) μM, and 56.7 (10.6–426.5) μM Se/M CREAT, respectively, whereas, for the patients, it was 1.246 (0.53–2.45) μM, 0.39 (0.05–1.90) μM, and 75.1 (4.9–656.2) μM Se/M CREAT, respectively. Additionally, the patients were separated into three subgroups according to the severity of their disease state as judged by NYHA procedure, and were then compared to the control group. Only group 4 (the most severe state of the disease) had a significantly lower concentration of urinary Se than the control group. However, the difference became nonsignificant when normalized for CREAT levels. There was no significant difference in the plasma Se levels between the controls and any of the patient groups. As the plasma Se in the control group and in the DCM patients both fell on the low end of the “normal” range, with the patients being marginally lower than the controls, there is no firm evidence from this study to suggest that Se is related to the high incidence rate of DCM found in Saudi Arabia.     

DNA barcoding of marine fishes from Saudi Arabian waters of the Gulf

We used the cytochrome oxidase subunit I (coI) gene DNA to barcode 117 endemic Gulf and cosmopolitan Indo–West Pacific fish species belonging to 54 families and 13 orders. Novel DNA barcodes were provided for 18 fish species (Trachinocephalus sp., Nematalosa sp., Herklotsichthys lossei, Upeneus doriae, Trachurus indicus, Apogonichthyoides taeniatus, Verulux cypselurus, Favonigobius sp., Suezichthus gracilis, Sillago sp., Brachirus orientalis, Pegusa sp., Lepidotrigla bispinosa, Lepidotrigla sp., Grammoplites suppositus, Hippichthys sp., Paramonacanthus sp. and Triacanthus sp.). The species delimitation analysis, conducted with Poisson tree processes– Bayesian PTP (PTP–bPTP) and nucleotide-divergence-threshold (NDT) models), found 137 and 119 entities respectively. Overall, NDT method, neighbour-joining species tree and the prior taxonomic assessment provided similar results. Among the 54 families considered, only 10 (Ariommatidae, Ephippidae, Leiognathidae, Nemipteridae, Plotosidae, Pomacanthidae, Pomacentridae, Priacanthidae and Rachycentridae) showed the occurrence of molecular diagnostic pure characters. The DNA barcoding database developed during this study will help ichthyologists to identify and resolve the taxonomic ambiguities they may encounter with the fishes occurring in The Gulf and throughout the region.     

Food habits of the Arabian skink,Scincus hemprichii Wiegmann, 1837, (Sauria: Scincidae), in the Southwest Saudi Arabia

Food and feeding habits of the Arabian skink, Scincus hemprichii were investigated in Jazan province, southwest of Saudi Arabia. S. hemprichii individuals fed during eleven months of the year. The mass of food in the stomachs indicated that a high degree of foraging success occurred during the warm spring while the lowest was during winter with January as an exception to feeding by the lizard. Analysis of the contents of 60 stomachs revealed that the diet of S. hemprichii in the study area consisted of arthropods, with two species of beetles of the family Dermestidae (Dermestis vulpinus and Dermestis maculates) and three type of dipteran larvae, accounting for 76% of the total volume of the food items. Specimens collected during January had empty stomachs.     

The frequency of middle phalangeal hair in Saudi Arabia.

Middle phalangeal hair was found to be present in 71% if Saudi Arabian males. For those exhibiting this trait, the frequency of combinations of digits with hair was similar to the frequency in other populations.     

Selenium status in Saudi Arabia

Selenium (Se) is a naturally occurring trace element that is essential for animal and human nutrition, but the range between dietary requirements and toxic levels is relatively narrow. In this review, we are interested in the beneficial effects of selenium and we report on a number of studies of the selenium status of different populations in Saudi Arabia. The Status reflects the geographical area inhabited by the populations. Apart from the few available studies reviewed here, no data on the human status of Se in Saudi Arabia has been obtained. A further objective of this paper is throw some the light on the direction of future studies.     

Prevalence of adenoviruses as ocular disease causatives in Saudi Arabia

Although Human Adenoviruses outbreaks are rare, there still could be a potential chance for those viruses to mutate and spread quickly in human populations with severe public health and socioeconomic consequences. Outbreaks often spread fairly quickly with considerable morbidity/mortality. Saudi Arabia’s geopolitical and religious significance bring with it, millions of pilgrims, and tourists yearly. This presents a significant potential for HAdVs epidemics. This review shows that even with the mushrooming serotypes and genotypes, the scholarly knowledge on the nature, structure, transmission, and management of HAdVs is already well-established. Significant research is ongoing on pharmacological interventions, which, presently remain speculative and lacking in effectiveness. This review similarly uncovers a shortage of literature, both recent and dated, on epidemic keratoconjunctivitis in either Saudi Arabia or the Middle East.     

Breast cancer in the eastern province of Saudi Arabia

In the Kingdom of Saudi Arabia (KSA), hospital and population based statistics have shown that breast cancer has the highest crude frequency rate among Saudi women. The scarcity of reports about the disease in the KSA has been the impetus to this analysis about breast cancer in the eastem province of KSA. Data on female patients with invasive breast carcinoma seen at King Fahd Hospital of the University in the eastern province of KSA, were retrospectively reviewed. The analysis intended to examine the pattern of the disease and the outcome for patients. Between 1985 and 1995, 292 patients were identified. Their median age±SD (standard deviation) was 42±10.5 years. Most patients were younger than 50 years (78%) and were predominantly premenopausals (79%). Only 25 (9%) of patients had stage I cancer, whilst 130 (44%), 90 (30%), and 47 (16%) had stage II, III, and IV, respectively. Among patients with known axillary nodal status (242 patients), only 37% were node-negative whilst 32% and 31% had 1–3, and ≥4 positive nodes, respectively. Adjuvant chemotherapy and tamoxifen were commonly offered; nonetheless, other adjuvant modalities were rarely utilised. The median follow-up ±SD of all patients was 62.3±8.9 months: 152 patients (52%) were alive with no evidence of disease, 25 (9%) were alive with evidence of disease, and 115 (39%) were dead from breast cancer or its related complications. The median survival of the entire group was not obtained, but the 10-year projected survival was 55%. For stage I and II patients, 118 (76%) were alive with a projected 10-year actuarial survival of 64%. On the other hand, only 51 (57%) of patients with stage III disease were alive with a median survival of 41.5 months (95% Confidence interval (CI), 18.9 to 51.3). Patients with stage IV disease demonstrated a poor outcome with a median survival of 23.5 (95%, CI 12.2 to 31.4). Multivariate analyses were performed to explore the influence of independent variables on overall survival (OS) for patients with non-metastatic disease. Besides the expected adverse effect of disease progression, the favourable influence of adjuvant chemotherapy and tamoxifen prevailed. The amount of benefit gained from tamoxifen, however, was small. Similar analyses were undertaken to determine the influence of independent variables on progression-free survival (PFS). These analyses ascertained the adverse effects of advanced stage and the favourable impact of adjuvant chemotherapy. Breast cancer in the KSA has features that are distinctive from those of industrialised countries. Survival data, however, were comparable. The favourable influence of adjuvant chemotherapy was evident on both OS and PFS. Adjuvant tamoxifen, however, had little effect. Due to its infrequent use, the role of other adjuvant modalities could not be asserted.     

Skin lipids from Saudi Arabian birds

Skin lipids play an important role in the regulation of cutaneous water loss (CWL). Earlier studies have shown that Saudi desert birds exhibit a tendency of reduced CWL than birds from temperate environment due to adaptive changes in composition of their skin lipids. In this study, we used thin-layer chromatography (TLC) for separation and detection of non-polar and polar lipids from the skin of six bird species including sooty gull, brown booby, house sparrow, Arabian waxbill, sand partridge, and laughing dove. The lipids were separated and detected on Silica gel G coated TLC plates and quantified by using densitometric image analysis. Rf values of the non-polar lipids were as follows: cholesterol (0.29), free fatty acids (0.58), triacylglycerol (0.69), fatty acids methyl esters (0.84) and cholesterol ester (0.97). Rf values for the polar lipids were: cerebroside (0.42), ceramide (0.55) and cholesterol (0.73). The results showed the abundance of fatty acids methyl esters (47.75–60.46%) followed by triacylglycerol (12.69–24.14%). The remaining lipid compositions were as follows: cholesterol (4.09–13.18%), ceramide (2.18–13.27%), and cerebroside (2.53–12.81%). In conclusion, our findings showed that TLC is a simple and sensitive method for the separation and quantification of skin lipids. We also reported a new protocol for lipid extraction using the zirconia beads for efficient disruption of skin tissues. This study will help us better understand the role of skin lipids in adaptive physiology towards adverse climatic conditions.     

Population development of Arabian Gazelles,Gazella arabica,on the Farasan Islands,Saudi Arabia (Mammalia: Bovidae)

The population of the Arabian Gazelle (Gazella arabica) was assessed on Farasan Kebir, the main island of the Farasan Archipelago (Saudi Arabia), from June 2010 to January 2013, using road strip counts. Two methods of estimating the population size were applied to analyse data obtained from the road strip count: (i) the traditional technique after Bothma, with a fixed strip width, and (ii) distance sampling using DISTANCE 6.0. Estimates varied between 483 gazelles (95% CI: 44) in November 2010 and 1070 gazelles (95% CI: 63) in June 2010. The number of gazelles estimated for Farasan Kebir using distance sampling is 2388 gazelles (95% CI: 921) in December 2011, 1199 gazelles (95% CI: 1372) in June 2012, and 1048 gazelles (95% CI:1524) in January 2013. Taking into account previous counts (1988–2009) the population seems, despite considerable variations, surprisingly stable. This may be attributed to a prevailing fishing culture among local residents and thus the absence of traditional hunting as well as the ranger activities on the islands. The disparity between the two estimation methods decreased to only 270 gazelles in January 2013 and provides additional confidence in the future application of both estimation techniques.The traditional technique is recommended as the more practical method for rangers and conservation mangers to determine population changes.     

Some blood genetic markers of selected tribes in Western Saudi Arabia

A total of 292 randomly selected subjects belonging to two indigenous Arab tribes (Harbi and Ghamid) and two immigrant tribes (Mograbi and Mowallad), residents in Western Saudi Arabia, have been tested for genetic variants of six blood groups, four serum proteins, and five red cell enzyme systems. The distribution of the polymorphic systems was different between indigenous and immigrant tribes, and the present Arab population shows a considerable degree of admixture from the surrounding countries, in particular Africa.     

Fungi inhabiting household environments in Riyadh,Saudi Arabia

Fungi inhabiting household environments in the West, East and Central localities of Riyadh city were screened. The screened area included bedrooms, drawing rooms, living rooms, kitchens and bathrooms. The common genera of fungi isolated wereAlternaria, Aspergillus, Cercospora, Chaetomium, Cladosporium, Curvularia, Drechslera, Embellisia, Fusarium, Mucor, Penicillium, Rhizopus, Scytalidium, Trichoderma, Torula andUlocladium. Two uncommon generaNodulosporium andOidiodendron for Saudi Arabian mycoflora were also isolated. In all the localities, the highest number of fungal colonies per plate or per gram were found in the living rooms, followed by bedrooms. The number of colonies per plate or per gram was in general higher in densely populated than in less populated areas.     

A survey of mammal diversity in the Turaif province,Kingdom of Saudi Arabia

One hundred and forty mammals of fifteen different species belonging to nine families, collected during one-year survey period in Turaif province of Saudi Arabia, are reported. Collections were made during studying the diversity of land vertebrate fauna of Turaif area at the northern province of Saudi Arabia. Cricetidae (n?=?64) was the most common family. Jaculus jaculus vocator (n?=?34) was recorded the highest number of events for any mammal in the surveyed area followed by Gerbillus nanus (n?=?23). Two species of mammals namely G. nanus (n?=?23) and Felis margarita (n?=?3) were reported for the first time in the study area. The geographical distribution of the collected species within this province was mapped.     

Seed-borne fungi in domestic bird feed in Saudi Arabia

Seed-borne fungi from seeds of barley, canary, maize, oats, rice, rapeseed, red millet, sunflower, white millet and yellow millet were investigated. These seeds are available in the market as bird feed, supplied by companies in various countries as healthy and nutritious food for domestic birds. A total of 81 fungal species were isolated. The genusAspergillus was predominant with 23 species, followed byPenicillium with 18,Ulocladium with 7,Alternaria with 6 andChaetomium, Curvularia andDrechslera with 5 species each. Other genera isolated wereAureobasidium, Cladosporium, Fusarium, Mucor, Rhizopus andSyncephalastrum.     

Early to Middle Devonian miospores from northern Saudi Arabia

Well-preserved palynomorph assemblages are recovered from the Devonian Jauf and Jubah formations in five shallow boreholes in the northern part of Saudi Arabia. These fully cored boreholes overlap stratigraphically to form a 1640 ft composite sequence. Miospores dominate the palynological assemblages of most samples. The assemblages are mainly composed of trilete spores but also contain cryptospores and monolete spores. One new genus, sixteen new species and two new varieties of miospores are described from the studied assemblages: Artemopyrainconspicua nov. sp., Artemopyrarecticosta nov. sp., Camarozonotriletesfilatoffii nov. sp., Camarozonotriletesrugulosus nov. sp., Cymbohilatesbaqaensis nov. sp., Cymbohilatescomptulus nov. sp., Cymbohilatesheteroverrucosus nov. sp., Cymbosporitesasymmetricus nov. sp., Dibolisporitespilatus nov. sp., Dictyotriletesbiornatus nov. sp., Gneudnasporadivellomedia (Chibrikova) Balme, 1988 var. divellomedia, Gneudnasporadivellomedia (Chibrikova) Balme, 1988 var. minor nov. var., Latosporitesovalis nov. sp., Scylasporacostulosa nov. sp., Squamisporaarabica nov. gen. and sp., Stellatisporamulticostata nov. sp., Zonotriletesarmillatus nov. sp. and Zonotriletessimplicissimus nov. sp. Their stratigraphic distribution is compared to the well-established Devonian West European zonation of Streel et al. (1987) (Streel, M., Higgs, K.T., Loboziak, S., Riegel, W., Steemans, P., 1987. Spore stratigraphy and correlation with faunas and floras in the type marine Devonian of the Ardenne-Rhenish region. Review of Palaeobotany and Palynology 50, 211-219). A late Pragian-Givetian age is suggested for this sequence. No characteristic Eifelian taxa are recorded, but this could be explained by a gap in palyniferous samples.     

Conservation in Saudi Arabia; moving from strategy to practice

Conservation in the Kingdom of Saudi Arabia is relatively young, yet have made considerable gains in conservation through strategic proclamation and reintroductions. Changes in land use, illegal hunting and competition with domestic stock has decimated the native ungulates, meaning that the survival of the native ungulate species is now completely dependent on protected area network. The challenge is to sustain this network to make meaningful conservation impact into the future. We review the status of ungulate conservation in Saudi Arabia and highlight that the conservation strategy is well developed. The major challenge faced in conservation in Saudi Arabia now is to implement what has been sanctioned.     

Survey and molecular detection of Melissococcus plutonius,the causative agent of European Foulbrood in honeybees in Saudi Arabia

A large-scale field survey was conducted to screen major Saudi Arabian beekeeping locations for infection by Melissococcus plutonius. M. plutonius is one of the major bacterial pathogens of honeybee broods and is the causative agent of European Foulbrood disease (EFB). Larvae from samples suspected of infection were collected from different apiaries and homogenized in phosphate buffered saline (PBS). Bacteria were isolated on MYPGP agar medium. Two bacterial isolates, ksuMP7 and ksuMP9 (16S rRNA GenBank accession numbers, KX417565 and KX417566, respectively), were subjected to molecular identification using M. plutonius -specific primers, a BLAST sequence analysis revealed that the two isolates were M. plutonius with more than 98% sequence identity. The molecular detection of M. plutonius from honeybee is the first recorded incidence of this pathogen in Saudi Arabia. This study emphasizes the need for official authorities to take immediate steps toward treating and limiting the spread of this disease throughout the country.