Biological traits of naturally transgenic plants and their evolutional roles

Agrobacterial transformation is a main method of creation of transgenic plants under laboratory conditions. It is based on regeneration of whole plants from cells transformed with vectors based on T-DNA of agrobacteria. In addition, natural plants are described that contain T-DNA in their genomes and have been vertically transferring it throughout generations over millennia. This DNA was called cellular T-DNA (cT-DNA), and plants containing it are referred to as naturally transgenic ones. Since evolution involves manifold acts of such plant transformation, the latter appears to play important roles. This review analyzes the significance and feasible functions of cT-DNA in the evolution. Roles of cT-DNA in control of plant morphogenetic reactions and in that of processes related to plant-microbe interactions are also discussed.     

Emerging physiological roles for N-acylphosphatidylethanolamine metabolism in plants: signal transduction and membrane protection

The activation of N-acylphosphatidylethanolamine (NAPE) metabolism in plants appears to be associated mostly with cellular stresses. In response to pathogen elicitors, NAPE is hydrolzyed by phospholipase-D (PLD), and corresponding medium-chain, saturated N-acylethanolamines (NAEs) are released by plant cells where they act as lipid mediators to modulate ion flux and activate defense gene expression. In desiccated seeds of higher plants, long-chain, saturated and unsaturated NAEs are prevalent, but are rapidly metabolized during the first few hours of imbibition, a period of substantial osmotic stress. NAPE synthesis is increased in seeds during this same period of rapid rehydration. A membrane-bound enzyme designated NAPE synthase has been purified from imbibed cottonseeds and its unusual biochemical properties suggest that it may scavenge free fatty acids in vivo. This feature of NAPE metabolism may be unique to higher plants a may be a mechanism for the rapid recycling of fatty acids back into membrane-associated NAPE. Altogether, increasing evidence indicates that NAPE metabolism in plants shares functional similarities with NAPE metabolism in animal systems, including signal transduction and cellular protection. In particular, the emerging role of released NAEs as lipid mediators in plant defense signaling represents an intriguing parallel to 'endocannabinoid signaling' in several mammalian cell types.     

Structure,evolution and diverse physiological roles of SWEET sugar transporters in plants

Plant Molecular Biology - Present review describes the structure, evolution, transport mechanism and physiological functions of SWEETs. Their application using TALENs and CRISPR/CAS9 based genomic...     

Predator effects on aquatic community assembly: disentangling the roles of habitat selection and post-colonization processes

Top predators are known to play an important role in the assembly of communities via two mechanisms: (1) by altering the colonization (or emigration) patterns of prey through behavioral habitat selection, and (2) by altering vital rates (e.g. mortality, birth) of prey after colonization. While both these mechanisms act to determine assembly, research has focused on either their combined overall effects (confounding them), or examined them singly. As a result, it remains unclear how these mechanisms act to sequentially shape community structure. In this study, we experimentally disentangle habitat selection and post‐colonization effects of predaceous fish to test their independent and combined influence on the assembly of insect and larval amphibian communities in experimental freshwater habitats. Specifically, we ask, ‘do the behavioral choices of colonists continue to structure aquatic communities even after post‐colonization processes have occurred?’ Like previous studies, we found that colonization was strongly reduced by the presence of fish cues. More importantly, these effects of fish on prey colonization behavior combined independently with post‐colonization processes to determine the overall effect of predators on community assembly. Although habitat selection and predation both reduced abundance and biomass of most taxa in the post‐colonization communities, these factors had qualitatively different effects on aspects of trophic structure. Habitat selection altered the ratio of secondary to primary consumer abundance and biomass, while post‐colonization predation drove strong trophic cascades not observed in response to habitat selection. Our results suggest that behavioral choices regarding habitat selection can have lasting and unique effects on the structure of aquatic communities.     

Periodic inundations drive community assembly of amphibious plants in floodplain lakes

Hydrobiologia - Understanding the effects of disturbance regimes on community assembly is an essential issue in community ecology. Yet, little is known about how water regimes drive community...     

Plant functional traits and community assembly along interacting gradients of productivity and fragmentation

Quantifying the association of plant functional traits to environmental gradients is a promising approach for understanding and projecting community responses to land use and climatic changes. Although habitat fragmentation and climate are expected to affect plant communities interactively, there is a lack of empirical studies addressing trait associations to fragmentation in different climatic regimes.In this study, we analyse data on the key functional traits: specific leaf area (SLA), plant height, seed mass and seed number. First, we assess the evidence for the community assembly mechanisms habitat filtering and competition at different spatial scales, using several null-models and a comprehensive set of community-level trait convergence and divergence indices. Second, we analyse the association of community-mean traits with patch area and connectivity along a south–north productivity gradient.We found clear evidence for trait convergence due to habitat filtering. In contrast, the evidence for trait divergence due to competition fundamentally depended on the null-model used. When the null-model controlled for habitat filtering, there was only evidence for trait divergence at the smallest sampling scale (0.25 m × 0.25 m). All traits varied significantly along the S–N productivity gradient. While plant height and SLA were consistently associated with fragmentation, the association of seed mass and seed number with fragmentation changed along the S–N gradient.Our findings indicate trait convergence due to drought stress in the arid sites and due to higher productivity in the mesic sites. The association of plant traits to fragmentation is likely driven by increased colonization ability in small and/or isolated patches (plant height, seed number) or increased persistence ability in isolated patches (seed mass).Our study provides the first empirical test of trait associations with fragmentation along a productivity gradient. We conclude that it is crucial to study the interactive effects of different ecological drivers on plant functional traits.     

Correction to: Periodic inundations drive community assembly of amphibious plants in floodplain lakes

Hydrobiologia - Due to an unfortunate mistake during the production process, some rows in Table 1 were distorted. The original article has been corrected and the correct display of Table 1 is also...     

The two Plasmodium falciparum nucleosome assembly proteins play distinct roles in histone transport and chromatin assembly

The malarial parasite Plasmodium falciparum has two nucleosome assembly proteins, PfNapS and PfNapL (Chandra, B. R., Olivieri, A., Silvestrini, F., Alano, P., and Sharma, A. (2005) Mol. Biochem. Parasitol. 142, 237-247). We show that both PfNapS and PfNapL interact with histone oligomers but only PfNapS is able to deposit histones onto DNA. This property of PfNapS is divalent cation-dependent and ATP-independent. Deletion of the terminal subdomains of PfNapS abolishes its nucleosome assembly capabilities, but the truncated protein retains its ability to bind histones. Both PfNapS and PfNapL show binding to the linker histone H1 suggesting their probable role in extraction of H1 from chromatin fibers. Our data suggests distinct sites of interaction for H1 versus H3/H4 on PfNapS. We show that PfNapS and PfNapL are phosphorylated both in vivo and in vitro by casein kinase-II, and this modification is specifically inhibited by heparin. Circular dichroism, fluorescence spectroscopy, and chymotrypsin fingerprinting data together suggest that PfNapL may undergo very small and subtle structural changes upon phosphorylation. Specifically, phosphorylation of PfNapL increases its affinity 3-fold for core histones H3, H4, and for the linker histone H1. Finally, we demonstrate that PfNapS is able to extract histones from both phosphorylated and unphosphorylated PfNapL, potentially for histone deposition onto DNA. Based on these results, we suggest that the P. falciparum NapL is involved in the nucleocytoplasmic relay of histones, whereas PfNapS is likely to be an integral part of the chromatin assembly motors in the parasite nucleus.     

Herb abundance and life-history traits in two contrasting alpine habitats in southern Norway

Colonisation is often a critical stage in the life history of plants, and recruitment success is expected to have a strong impact on plant frequencies especially among herbs. Several plant traits (seed size, plant height, leaf dry weight and specific leaf area) are suggested to be functionally important in early life stages, and the impact of such traits is expected to increase with habitat harshness. In this comparative study we examine the relative role of different plant traits for herb community patterns on both a local and regional scale in two contrasting alpine ecosystems in southern Norway: (1) a sub-continental region with more dry and productive, base-rich soils (Ho1, Hallingdal) and (2) an oceanic region, with humid acidic soils (Setesdal). Differences in species richness between regions were mainly due to higher herb richness in the base-rich region (n=55) than in the acidic region (n=13). Among traits, herb species seed weight was higher at the acidic site. The relative importance of traits for explaining herb local abundance and regional distribution tended to be stronger at the acidic site. No trait had a significant effect at the base-rich site, although seed weight and seed number were marginally non-significant. Plant clonality was positively related to local abundance and marginally to regional distribution at the acidic site. Plant frequency-trait correlations were generally higher in the acidic region then in the base-rich region. There was further a (marginal) increase of herbs with large seeds and with a dependence on sexual reproduction with increasing pH levels in Ho1. Soil pH was also the most important environmental variable for herb richness in Ho1, while no environmental variable was significantly related to herb richness in Setesdal. The study suggests that recruitment through seed is critical for the alpine herb community patterns especially in harsh habitats. Possible explanations for recruitment constraints include both soil acidity (low pH and Ca levels in addition to possible aluminium toxicity) and disturbance through grazing.     

Growth and physiological responses of subalpine forbs to nitrogen and soil moisture: investigating the potential roles of plant functional traits

Anthropogenic inputs of biologically available nitrogen (N) and climate change are simultaneously altering N and soil moisture availability in terrestrial ecosystems. Yet, plant responses to concurrent changes in both N and soil moisture in non-grassland ecosystems remain poorly understood. Our objective was to investigate how rooting depth and N-fixing ability—two functional traits we expected to mediate soil moisture and N limitations—influence forb responses to N and soil moisture availability in the Rocky Mountains USA. We assessed the growth and physiological responses (i.e., chlorophyll fluorescence, transpiration rate, and floral display) of four subalpine forb species to N additions across a naturally-occurring soil moisture gradient during one growing season. Soil moisture had a stronger positive effect on growth in shallow-rooted species and N additions had a stronger positive effect on photosynthetic capacity in species without N-fixing abilities. Transpiration rates were not consistent with soil moisture limitations expected for shallow-rooted species, and soil moisture and N had a neutral or negative influence on maximum floral displays across species. Nitrogen and soil moisture appeared to each limit separate response variables in some cases and we did not observe any N?×?soil moisture interactions. These findings suggest that shallow-rooted species may be more vulnerable to increased drought severity and that increased N availability may disproportionately benefit species without N-fixing abilities. However, mixed support for our hypotheses suggests that environmental conditions and functional traits not evaluated here likely influence subalpine plant responses to soil moisture and N availability.     

Ecological roles of arbuscular mycorrhizal fungi in two wild legume plants

Two wild legume plants,Glycine soja andCassia mimosoides var.nomame, and a cultivated plant, soybean (Glycine max), were employed for a study of triple symbiosis with an inoculum ofScutellispora heterogama harvested from natural soils and an inoculum of their own rhizobial cells. The dry weight, colonization of arbuscular mycorrhizal fungus, nodule formation and N₂-fixation activity were estimated as the parameters of triple symbiosis. The two wild legume plants showed greater growth with colonization of arbuscular mycorrhizae than with nodulation, whereas the cultivated legume showed more nodulation than colonization of arbuscular mycorrhizae. Moreover,S. heterogama appeared to stimulate the triple symbiosis for the wild legume plants. The results suggested that spores ofS. heterogama are important in disturbed soils in Korea.     

Physiological roles of trehalose in bacteria and yeasts: a comparative analysis

The disaccharide trehalose is widely distributed in nature and can be found in many organisms, including bacteria, fungi, plants, invertebrates and mammals. Due to its particular physical features, trehalose is able to protect the integrity of the cell against a variety of environmental injuries and nutritional limitations. In addition, data available on several species of bacteria and yeast suggest specific functions for trehalose in these organisms. Bacteria can use exogenous trehalose as the sole source of carbon and energy as well as synthesize enormous amounts of the disaccharide as compatible solute. This ability to accumulate trehalose is the result of an elaborate genetic system, which is regulated by osmolarity. Some mycobacteria contain sterified trehalose as a structural component of the cell wall, whereas yeast cells are largely unable to grow on trehalose as carbon source. In these lower eukaryotes, trehalose appears to play a dual function: as a reserve compound, mainly stored in vegetative resting cells and reproductive structures, and as a stress metabolite. Recent findings also point to important biotechnological applications for trehalose.     

Endothelin-1: physiological and pathological roles in myometrium

Endothelin-1 (ET-1), a member of endothelin peptide family is released by many different tissues including uterine smooth muscle. ET-1 acts through ETA and ETB receptors and is implicated in a wide range of biological and pathological functions that explain the great attention of the pharmacological industry for ET-1 receptors as potential therapeutic targets in vascular pathologies and cancers. It is now well established that ET-1 is also able to regulate myometrial functions. In the present review, we focused on ET axis and related signaling pathways involved in the regulation of myometrial contraction, as well as cell proliferation and survival. Such ET-1-mediated cellular functions play a critical role in normal pregnancy, preterm birth and uterine leiomyoma.     

Nectar as food for birds: the physiological consequences of drinking dilute sugar solutions

 Nectarivory has evolved many times in birds: although best known in hummingbirds, sunbirds and honeyeaters, it also occurs on an opportunistic basis in a varied assortment of birds. We present a phylogenetic analysis of the distribution of nectarivory in birds. Specialised avian nectarivores are generally small, with an energetic lifestyle and high metabolic rates. Their high degree of dependence on nectar as a food source has led to convergence in morphological, physiological and behavioural adaptations. We examine the constituents of nectar which are most important to bird consumers, and how the birds deal with them in terms of physiology and behaviour. There are still unanswered questions: for example, the dichotomy between sucrose-rich nectars in hummingbird-pollinated plants and predominantly hexose-rich nectars in sunbird-pollinated plants appears to have little to do with bird physiologies and may rather reflect patterns of nectar secretion. Received November 28, 2002; accepted January 26, 2003 Published online: June 2, 2003