串联亲和纯化标签分类与优化

质谱技术高速发展,检测灵敏度不断提高,但区分特异性与非特异性相互作用仍然是研究相互作用蛋白的瓶颈,获得高纯度的蛋白复合体是鉴定相互作用蛋白的限制性因素。近年来串联亲和纯化（TAP）技术的产生和发展有效解决了相互作用蛋白鉴定中的特异性问题。TAP技术是将N端或C端TAP标签与目的蛋白融合并导入靶细胞进行表达,裂解细胞释放融合蛋白,在接近生理状态下利用标签两步特异性亲和洗脱得到蛋白复合体。其中,TAP标签蛋白的选择和优化是该技术成功的关键。     

串联亲和纯化技术及其应用

串联亲和纯化(tandemaffinitypurification,TAP)是一种能快速研究体内蛋白质相互作用的新技术,经过两步特异性亲和纯化,可快速得到生理条件下与靶蛋白质存在真实相互作用的蛋白质。TAP方法最初用于酵母中,因其具通用性、高效性、高纯度及假阳性低等特点得到了快速发展,至今已成功运用于许多其他生物。现主要介绍TAP方法的原理、TAP标签及其在不同物种中的应用。     

拟南芥FT基因原核表达载体的构建、表达和蛋白纯化

FT基因是植物成花素,在植物的开花调控中起着重要作用。构建了用于原核表达的FT-eGFP表达载体,并在大肠杆菌BL21中进行重组蛋白的诱导表达。从IPTG诱导浓度、诱导时间和诱导温度等方面进行了细致的分析,最终建立了FT-eGFP融合蛋白诱导表达的优化体系:当菌液OD600=0.6-1.0时,采用IPTG1.0mol/L,在28℃诱导表达6h。摸索和建立了利用HisTrapKit标签,经过镍柱纯化,纯化目的蛋白的技术体系,为进一步研究FT基因在植物开花调控中的应用奠定了基础。     

串联亲和标签LOX蛋白慢病毒表达载体的构建及在乳腺癌细胞中的表达

目的:为了研究赖氨酰氧化酶(Lysyl Oxidase,LOX)及其相互作用蛋白质在乳腺癌中的功能,构建带StrepⅡ/FLAG串联亲和标签的重组LOX蛋白慢病毒表达载体并在乳腺癌细胞MDA-MB-231中表达。方法:设计引物通过聚合酶链式反应获得带StrepⅡ/FLAG串联亲和标签的LOX蛋白(LOX-SF)的亲本质粒,双酶切后鉴定测序克隆至GV303表达载体,连同慢病毒包装质粒共同转染293T得到GV303/LOX-SF慢病毒,将其转染MDA-MB-231细胞,使用荧光定量PCR和蛋白质印迹实验对细胞中重组蛋白LOX-SF进行检测。结果:通过串联亲和纯化获得LOX-SF重组蛋白,使用标签抗体成功鉴定到LOX-SF重组蛋白在MDA-MB-231细胞内稳定表达。结论:GV303/LOX-SF的构建,使带StrepⅡ/FLAG融合标签的LOX蛋白在MDA-MB-231中成功表达及纯化,为筛选和研究LOX及其相互作用蛋白在乳腺癌细胞内的功能奠定了实验基础。     

S100A4原核表达载体的构建以及蛋白的表达和纯化

S100A4是S100蛋白家族的成员,在细胞的增殖、分化、损伤修复以及肿瘤细胞转移等方面发挥重要的调控作用.本研究将S100A4全长基因构建到pET28a原核表达载体上,利用大肠杆菌表达系统表达和纯化出高纯度的重组人S100A4.通过试验证明,重组人S100A4蛋白在体外可以有效地增强黑色素瘤细胞A375-S2的增殖.重组人S100A4原核表达与纯化方法的建立将促进其结构和生物学功能研究,并且对于S100蛋白家族其它蛋白的表达与纯化具有重要的参考意义.     

GST-His双标签原核表达载体的构建及应用

目的：在原有带有GST标签的pGEX-KG载体上添加His标签,构建双标签原核表达载体,以提高纯化后的融合蛋白的纯度。方法：双酶切pGEX-KG载体,将同样带有双酶切位点编码His标签的DNA序列酶切后与其连接、转化大肠杆菌DH5α、鉴定阳性克隆并测序,并将编码雌激素受体B（ERβ）的片段构建到该载体上,分别利用GST标签和His标签对ERβ蛋白进行2次纯化。结果：构建了GST-His双标签原核表达载体,将ERβ编码片段克隆入该载体中,在原核生物中得到表达;分别用GST和His抗体进行Westernblot分析,均可检测到GST-His-ERβ融合蛋白的表达;利用此双标签载体纯化得到了纯度较高的ERβ蛋白。结论：GST-His双标签原核表达载体的构建对提高目的蛋白纯度具有重要意义。     

重组高原鼠兔瘦素原核表达载体的构建、蛋白表达及纯化

瘦素(leptin)由ob 基因编码,对调节能量代谢起着重要作用。本研究建立了高原鼠兔瘦素的原核表达系统,并对其进行了原核表达。研究中作者从高原鼠兔瘦素基因的cDNA 文库中,扩增编码高原鼠兔瘦素的核酸序列,并利用DNA 基因重组技术将其克隆到原核表达载体pET30a(+ )中,构建了高原鼠兔瘦素原核表达载体pET30a(+ )/ ppleptin。对目的片段进行测序确认后,将其转化到大肠杆菌BL21 中,并利用IPTG 诱导外源性目的蛋白表达。表达的包涵体蛋白经溶解及变性后上柱纯化。重组质粒经测序检测后,表明原核载体构建正确。同时,SDS - PAGE 凝胶电泳结果显示,重组菌在16KD 处有明显新增条带,纯化后的目的蛋白条带纯度较高。该结果为高原鼠兔瘦素的后续基础研究提供了基础资料。     

串联亲和纯化技术在哺乳动物体系中的应用

蛋白质相互作用的研究是阐释基因功能的重要手段,随着蛋白质组学的发展和相应仪器的进步,在不同生物体系中进行的大规模的蛋白质相互作用研究逐步成为生物学领域的一个重要方面。该文介绍当前在大规模蛋白质相互作用研究中应用最为广泛的技术之一串联亲和纯化技术,以及该技术在哺乳动物体系中应用时的技术要点和目前取得的重要进展。     

MBP-gldABC融合蛋白基因的原核表达载体的构建

目的：构建可高效生产甘油脱水酶的大肠杆菌工程菌,方法：将编码甘油脱水酶的三个基因gldA、gldB、gldC,分别克隆至克隆载体pMD18-T和pSIM-T中,经测序正确后,再亚克隆至表达融合蛋白的高效表达载体pMAL-c2X上,构建成表达质粒pMAL-gldABC,并转化大肠杆菌E.coli DH5α。结果：成功地将甘油脱水酶基因gldABC以同向串联方式克隆到大肠杆菌融合表达载体pMAL-c2X中,结论：得到了含gldABC基因的MBP融合蛋白表达载体,为研究甘油脱水酶基因（gldABC）的在原核表达载体中的串联表达奠定了基础。     

核酸酶P1的原核表达、纯化及酶学特性分析

为了建立一种核酸酶P1(Nuclease P1,NP1)的原核表达纯化系统,首先采用重叠延伸PCR将22段寡核苷酸拼接,获得人工合成的NP1基因。将其克隆至分泌型表达载体pMAL-p4X获得重组质粒pMAL-p4X-NP1,然后将重组载体转化T7 Express和Origami B(DE3)菌株诱导表达,利用Amylose亲和层析柱纯化获得重组蛋白,并对其活性、热稳定性和金属离子依赖性进行系统分析。SDS-PAGE结果显示,重组蛋白MBP-NP1(Maltose binding protein-NP1)在T7 Express和Origami B(DE3)菌株中均可表达,且以可溶性形式存在。活性检测表明Origami B(DE3)菌株中获得的重组蛋白活性高于T7 Express菌株(75.48 U/mg:51.50 U/mg);利用蛋白酶Factor Xa切除MBP标签后,两种重组蛋白的比活力均有提高,分别为258.13 U/mg和139.20 U/mg。重组NP1表现出良好的热稳定性,80℃温浴30 min后重组酶仍具有90%以上的活力。2.0 mmol/L Zn2+对NP1有比较明显的激活作用,相同浓度的Cu2+则对该酶有强烈的抑制作用。该研究实现了NP1在大肠杆菌系统中的功能性表达,为NP1纯酶的制备提供一个替代途径。     

一种高效、稳定的分泌型原核表达载体的构建及应用

以本室构建的原核表达载体pTO-T7为基础载体,PCR合成ompT引导序列,插入该载体多克隆位点上游,构建了分泌型原核表达载体pTO—OT。将2个外源基因克隆至pTO—OT,2个重组质粒在大肠杆菌中均得以高效表达,表达量为25％～30％。Western印迹分析证实了重组蛋白在大肠杆菌中表达后可被信号肽酶有效识别,切割后的重组蛋白具有良好的免疫学活性。对重组表达菌株的连续传代实验证实了该表达载体具有良好的遗传稳定性,显示了该原核表达载体在基因工程中的应用价值。     

Protein-protein interactions of tandem affinity purification-tagged protein kinases in rice

Forty-one rice cDNAs encoding protein kinases were fused to the tandem affinity purification (TAP) tag and expressed in transgenic rice plants. The TAP-tagged kinases and interacting proteins were purified from the T1 progeny of the transgenic rice plants and identified by mass spectrometry. Ninety-five percent of the TAP-tagged kinases were recovered. Fifty-six percent of the TAP-tagged kinases were found to interact with other rice proteins. A number of these interactions were consistent with known protein complexes found in other species, validating the TAP-tag method in rice plants. Phosphorylation sites were identified on four of the kinases that interacted with either 14-3-3 proteins or cyclins.     

Construction of a dual-tag system for gene expression, protein affinity purification and fusion protein processing

An E. coli vector system was constructed which allows the expression of fusion genes via a l-rhamnose-inducible promotor. The corresponding fusion proteins consist of the maltose-binding protein and a His-tag sequence for affinity purification, the Saccharomyces cerevisiae Smt3 protein for protein processing by proteolytic cleavage and the protein of interest. The Smt3 gene was codon-optimized for expression in E. coli. In a second rhamnose-inducible vector, the S. cerevisiae Ulp1 protease gene for processing Smt3 fusion proteins was fused in the same way to maltose-binding protein and His-tag sequence but without the Smt3 gene. The enhanced green fluorescent protein (eGFP) was used as reporter and protein of interest. Both fusion proteins (MalE-6xHis-Smt3-eGFP and MalE-6xHis-Ulp1) were efficiently produced in E. coli and separately purified by amylose resin. After proteolytic cleavage the products were applied to a Ni-NTA column to remove protease and tags. Pure eGFP protein was obtained in the flow-through of the column in a yield of around 35% of the crude cell extract.     

结核分枝杆菌H37Rv新基因Rv2742克隆表达及纯化

Rv2742是本课题组前期基于蛋白质基因组学策略从结核分枝杆菌Mycobacteriumtuberculosis H37Rv中发现、鉴定的遗漏注释基因。文中旨在建立结核分枝杆菌H37Rv漏注释蛋白Rv2742的可溶性诱导表达、纯化体系,为进一步探索Rv2742基因参与的生物学功能奠定基础。前期实验发现构建的pGEX-4T-2-Rv2742、pET-28a-Rv2742、pET-32a-Rv2742及pMAL-c2X-Rv2742原核表达载体均无法实现目的蛋白的诱导表达。但经密码子优化后,仅有pMAL-c2X-Rv2742载体能够实现目的蛋白的可溶性诱导表达。此外,通过比较不同宿主菌、温度及IPTG浓度对目的蛋白表达量的影响,发现目的蛋白在Rosetta (DE3)中,16℃及0.5mmol/LIPTG诱导条件下表达量最高。直链淀粉树脂(Amyloseresin)亲和层析柱纯化获得较纯的产物,经LC-MS/MS验证确认是Rv2742融合蛋白肽段序列。成功获得结核分枝杆菌H37Rv新基因Rv2742的重组蛋白,可进一步开展其潜在相互作用及免疫原性研究工作。     

重组hKGF2原核表达载体的构建及其蛋白质的纯化

角质细胞生长因子2（ keratinocyte growth factor 2, KGF2）是新近发现且发展迅速的成纤维细胞生长因子家族中新的一员,又称FGF10,是上皮细胞特异性的促有丝分裂剂,应用前景广泛。为构建其高效原核表达菌株,首先用RT-PCR法从培养的人胚胎肺成纤维细胞中获得去除信号肽的hKGF2 cDNA,将其插入pMD18-T载体;经测序后,克隆入pET-30a( + )表达载体,将成功构建的pET-30a( + )- hKGF2重组表达载体转入大肠杆菌BL21（DE3）,经IPTG诱导表达后, SDS-PAGE及Western blot鉴定重组蛋白为高效可溶性表达。重组蛋白经Ni+-NTA（镍亲和层析）一步法纯化后纯度达95%以上,为进一步的应用研究及大规模生产奠定了基础。     

Targeted tandem affinity purification of PSD‐95 recovers core postsynaptic complexes and schizophrenia susceptibility proteins

The molecular complexity of mammalian proteomes demands new methods for mapping the organization of multiprotein complexes. Here, we combine mouse genetics and proteomics to characterize synapse protein complexes and interaction networks. New tandem affinity purification (TAP) tags were fused to the carboxyl terminus of PSD‐95 using gene targeting in mice. Homozygous mice showed no detectable abnormalities in PSD‐95 expression, subcellular localization or synaptic electrophysiological function. Analysis of multiprotein complexes purified under native conditions by mass spectrometry defined known and new interactors: 118 proteins comprising crucial functional components of synapses, including glutamate receptors, K⁺ channels, scaffolding and signaling proteins, were recovered. Network clustering of protein interactions generated five connected clusters, with two clusters containing all the major ionotropic glutamate receptors and one cluster with voltage‐dependent K⁺ channels. Annotation of clusters with human disease associations revealed that multiple disorders map to the network, with a significant correlation of schizophrenia within the glutamate receptor clusters. This targeted TAP tagging strategy is generally applicable to mammalian proteomics and systems biology approaches to disease.     

Isolation of viral ribonucleoprotein complexes from infected cells by tandem affinity purification

The biochemical purification and analysis of viral ribonucleoprotein complexes (RNPs) of negative-strand RNA viruses is hampered by the lack of suitable tags that facilitate specific enrichment of these complexes. We therefore tested whether fusion of the tandem-affinity-purification (TAP) tag to the main component of viral RNPs, the nucleoprotein, might allow the isolation of these RNPs from cells. We constitutively expressed TAP-tagged nucleoprotein of Borna disease virus (BDV) in cells persistently infected with this virus. The TAP-tagged bait was efficiently incorporated into viral RNPs, did not interfere with BDV replication and was also packaged into viral particles. Native purification of the tagged protein complexes from BDV-infected cells by two consecutive affinity columns resulted in the isolation of several viral proteins, which were identified by MS analysis as the matrix protein, the two forms of the nucleoprotein and the phosphoprotein. In addition to the viral proteins, RT-PCR analysis revealed the presence of viral genomic RNA. Introduction of further protease cleavage sites within the TAP-tag significantly increased the purification yield. These results demonstrate that purification of TAP-tagged viral RNPs is possible and efficient, and may therefore provide new avenues for biochemical and functional studies of these complexes.     

Integrated tandem affinity protein purification using the polyhistidine plus extra 4 amino acids (HiP4) tag system

Peptide tag systems are a robust biophysical and biochemical method that is widely used for protein detection and purification. Here, we developed a novel tag system termed “HiP4” (histidine plus four amino acids) whose epitope sequence comprises only seven amino acids (HHHDYDI) that partially overlap with the conventional 6x histidine tag (6xHis-tag). We produced a monoclonal antibody against the HiP4 tag that can be used in multiple immunoassays with high specificity and affinity. Using this system, we developed a tandem affinity purification (TAP) and mass spectrometry (TAP-MS) system for comprehensive protein interactome analysis. The integrated use of nickel bead purification followed by HiP4 tag immunoprecipitation made it possible to reduce nonspecific binding and improve selectivity, leading to the recovery of previously unrecognized proteins that interact with hepatitis B virus X (HBx) protein or TAR DNA-binding protein 43 (TARDBP or TDP-43). Our results indicate that this system may be viable as a simple and powerful tool for TAP-MS that can achieve low background and high selectivity in comprehensive protein–protein interaction analyses.