Activation of liver alcohol dehydrogenase by glycosylation

D-Fructose and D-glucose activate alcohol dehydrogenase from horse liver to oxidize ethanol. One mol of D-[U-14C]fructose or D-[U-14C]glucose is covalently incorporated per mol of the maximally activated enzyme. Amino acid and N-terminal analyses of the 14C-labelled glycopeptide isolated from a proteolytic digest of the [14C]glycosylated enzyme implicate lysine-315 as the site of the glycosylation. 13C-n.m.r.-spectroscopic studies indicate that D-[13C]glucose is covalently linked in N-glucosidic and Amadori-rearranged structures in the [13C]glucosylated alcohol dehydrogenase. Experimental results are consistent with the formation of the N-glycosylic linkage between glycose and lysine-315 of liver alcohol dehydrogenase in the initial step that results in an enhanced catalytic efficiency to oxidize ethanol.     

Mechanism of freeze-thaw damage to liver alcohol dehydrogenase and protection by cryoprotectants and amino acids

Multiple freeze-thaw (FT) cycles, with complete melting between cycles, resulted in an exponential decline in liver alcohol dehydrogenase (LADH) enzyme activity. The reduction in activity of LADH as a result of FT damage was proportional to the decrease in the intensity of the tryptophan fluorescence of the enzyme. Treatment with urea resulted in a similar relationship between tryptophan fluorescence intensity and inactivation. Evidence from fluorescence and activity studies from the same sample, as well as gel electrophoresis, indicates that damage to LADH from a FT cycle, resulting in inactivation, is likely an unfolding of the enzyme rather than separation of subunits or aggregation of enzymes at the enzyme concentrations and cooling rates used. A nonexponential decline in enzyme activity, as a function of the number of FT cycles, can be achieved if complete melting between cycles is not allowed or if the samples are stored at +4 degrees C for 24 hr following the last FT cycle, prior to assay. In the latter case, a partial recovery in enzyme activity is seen. "Seeding," while lowering the enzyme activity, is desirable to achieve consistent results without the artifacts that are introduced if not used. Amino acids were tested for their effectiveness as cryoprotectants. From the results of this study, the mean fractional area loss of amino acid residues upon incorporation in globular proteins (f) is inversely proportional to the FT protection by these free amino acids. Thus, amino acid residues which tend to be found at the surface of proteins (e.g., glutamate) improve the FT survival of LADH, when added as the free amino acid, while those amino acids which are found in the interior of proteins (e.g., valine, leucine) sensitize LADH to FT damage. The pattern of protection ("fingerprint") of LADH by various amino acids is different from that of living cells. Furthermore, unlike the case with cells, glutamine and DMSO do not act independently when protecting LADH.     

Differences in thiol groups and multiple forms of rat liver alcohol dehydrogenase

Rat liver alcohol dehydrogenase was analyzed for multiple forms by gel-electrophoresis and for protein thiol groups by differential car?ymethylation before and after reduction. Differences in protein SH-groups were associated with different electrophoretic forms of the enzyme. In the form with highest mobility all cysteine residues were free to alkylation but in forms with lower mobilities some residues were unreactive. Three cysteine residues likely to be affected are reported. Different combinations of a few alternative SS-bridges, superficially located and of no importance in catalytic activity, are suggested to constitute one explanation to the multiplicity of the protein.     

Complete amino acid sequence of rat liver alcohol dehydrogenase deduced from the cDNA sequence

Alcohol dehydrogenase (ADH) catalyzes the rate-determining reaction in the metabolism of ethanol. We report here the complete nucleotide sequence of a cDNA encoding rat liver ADH, and the deduced amino acid (aa) sequence of the protein. The rat enzyme contains a cluster of aa substitutions and an aa insertion in the region between aa residues 111 and 118, which is near the intron-exon junction reported for the human ADH gene. It also contains an additional cysteine in the highly variable region from aa residues 108-125 which may account for the unusual lability of rat ADH compared with ADH from other species.     

Formation of non-amidine products in the chemical modification of horse liver alcohol dehydrogenase with imido esters

The reaction of imido esters with horse liver alcohol dehydrogenase (LADH) and other proteins is widely considered to involve direct conversion of amino groups to amidine functions. We have shown that the 14-fold activated form of LADH which is produced when the modification is carried out near pH 8 contains primarily N-alkyl imidate, rather than amidine, moieties. Fully acetamidinated LADH, which is formed directly at pH 10, or by multiple modification at pH 8, is 6-fold activated. The observed mechanism of amidine formation suggests a re-evaluation of various conclusions drawn from studies of protein amidination.     

Polymorphism of horse liver alcohol dehydrogenase

The properties of the most cathodal component of horse liver alcohol dehydrogenase (isozyme SS) have been found to vary. The variability is dependent on the livers from which the enzyme is isolated rather than on the purification procedure. Two distinct preparations, differing in catalytic properties, have been obtained and named S-type and A-type preparations. The preparations can be distinguished from each other by the ratio of activity with acetaldehyde to activity with the steroidal ketone 5_β-dihydrotestosterone. This ratio is about one for the S-type and twenty for the A-type preparations.     

Ternary complexes of liver alcohol dehydrogenase

Liver alcohol dehydrogenase (LADH; E.C. 1.1.1.1) provides an excellent system for probing the role of binding interactions with NAD(+) and alcohols as well as with NADH and the corresponding aldehydes. The enzyme catalyzes the transfer of hydride ion from an alcohol substrate to the NAD(+) cofactor, yielding the corresponding aldehyde and the reduced cofactor, NADH. The enzyme is also an excellent catalyst for the reverse reaction. X-ray crystallography has shown that the NAD(+) binds in an extended conformation with a distance of 15 A between the buried reacting carbon of the nicotinamide ring and the adenine ring near the surface of the horse liver enzyme. A major criticism of X-ray crystallographic studies of enzymes is that they do not provide dynamic information. Such data provide time-averaged and space-averaged models. Significantly, entries in the protein data bank contain both coordinates as well as temperature factors. However, enzyme function involves both dynamics and motion. The motions can be as large as a domain closure such as observed with liver alcohol dehydrogenase or as small as the vibrations of certain atoms in the active site where reactions take place. Ternary complexes produced during the reaction of the enzyme binary entity, E-NAD(+), with retinol (vitamin A alcohol) lead to retinal (vitamin A aldehyde) release and the enzyme binary entity E-NADH. Retinal is further metabolized via the E-NAD(+)-retinal ternary complex to retinoic acid (vitamin A acid). To unravel the mechanistic aspects of these transformations, the kinetics and energetics of interconversion between various ternary complexes are characterized. Proton transfers along hydrogen bond bridges and NADH hydride transfers along hydrophobic entities are considered in some detail. Secondary kinetic isotope effects with retinol are not particularly large with the wild-type form of alcohol dehydrogenase from horse liver. We analyze alcohol dehydrogenase catalysis through a re-examination of the reaction coordinates. The ground states of the binary and ternary complexes are shown to be related to the corresponding transition states through topology and free energy acting along the reaction path.     

Further investigations of the transient kinetics of alcohol oxidation catalysed by horse liver alcohol dehydrogenase

Due to the controversy over the half-of-the-sites reactivity of horse liver alcohol dehydrogenase during benzyl alcohol oxidation, we have re-investigated the transient kinetics, stoichiometry and rate parameters over a wide range of substrate concentrations (0.05 mm to 40 mm) at pH 7.0 and 8.5 and using newly determined extinction coefficients. Data were elaborated by computer analysis in order to separate the initial rapid step (burst) from the whole time-course of the reaction. It has been found that: (1) the dependence of the burst amplitude upon benzyl alcohol concentration is distinctly biphasic. In the range from 0.05 mm up to approximately 1 mm the burst amplitude is rather insensitive to changes in alcohol concentration and corresponds to 50% of the active sites of the enzyme; for alcohol concentrations greater than 1 mm this amplitude increases and reaches a value of approximately 90% when benzyl alcohol is 40 mm. (2) The steady-state initial rate is also biphasic with respect to alcohol concentration, indicative of substrate inhibition, which begins in the concentration range at which deviation from the half-burst also appears. In other words, burst amplitudes larger than 50% are concomitant with inhibition of the rate of enzyme turnover. (3) In the presence of isobutyramide the burst is larger than 50% for the whole range of concentration of the substrate and extrapolates at infinite substrate concentration to approximately 90% of the enzyme sites. (4) With deuteroethanol as substrate, the burst is larger than 50%, with or without isobutyramide, and extrapolates to approximately 95% of the enzyme sites at infinite substrate concentration. These data explain the discrepancy of results in the literature concerning the transient kinetics of alcohol oxidation. Mechanistic implications of the results (particularly the deviation from the halfof-the-sites behaviour of benzyl alcohol under inhibition conditions) are discussed.     

Anion binding to liver alcohol dehydrogenase

1. Complex formation at the general anion-binding site of the liver alcohol dehydrogenase subunit has been characterized by transient-state kinetic methods, using NADH as a reporter ligand. Equilibrium dissociation constants for anion binding at the site are reported. They conform basically to the lyotropic series of affinity order, with exceptionally tight binding of sulphate. The particular specificity for sulphate might be a general characteristic of anion-binding enzymic arginyl sites. 2. Anionic species of phosphate and pyrophosphate buffer solutions do not interact significantly with the general anion-binding site over the pH range 8-10. At lower pH, phosphate binding becomes significant due to complex formation with the monovalent H2PO4 species. The latter interaction corresponds to a dissociation constant of about 60 mM, indicating that phosphate binding is comparatively weak also at low pH. 3. It is concluded that previously reported pH dependence data for coenzyme binding to liver alcohol dehydrogenase cannot be much affected by coenzyme-competitive effects of buffer anion binding. Kinetic parameter estimates now determined for NADH binding in weakly buffered solutions agree within experimental precision with those obtained previously from measurements made in buffer solutions of 0.1 M ionic strength.     

Role of the essential thiol groups of yeast alcohol dehydrogenase

1. Incorporation of methyl groups from [methyl-(14)C]methionine into DNA of dividing HeLa cells was investigated, essentially by the procedures of Culp, et al. (1970). 2. Contrary to the report of the latter, but in agreement with other work on biomethylation of mammalian DNA, 5-methylcytosine was the sole methylated base detected. 3. Chromatographic separations of 3-methylcytosine from 5-methylcytosine and purines are discussed.