应用16S rRNA基因技术研究仔猪结肠梭菌Ⅳ群变化

【目的】研究从7日龄到35日龄(断奶后两周)仔猪结肠中梭菌Ⅳ群(柔嫩梭菌群,Clostridium Leptumgroup)结构以及数量的变化,探究该菌群与结肠中丁酸浓度的关系。【方法】选取3窝新生仔猪,分别在7、14、21(断奶)、24和35日龄每窝随机屠宰1头,收集结肠内容物,利用气相色谱测定挥发性脂肪酸(Volatilefatty acid,VFA);提取结肠内容物总细菌DNA,利用基于16S rRNA基因的变性梯度凝胶电泳(Denaturinggradient gel electrophoresis,DGGE)和Real-time PCR技术定性、定量分析梭菌Ⅳ群。【结果】对仔猪结肠中梭菌Ⅳ群DGGE图谱进行相似性分析显示,7日龄仔猪样品归于一簇,数值达90%以上,而与其他日龄的样品间相似性较低,断奶前(21日龄)和断奶后3天菌群则没有显著变化。Real-time PCR定量分析显示,仔猪结肠总细菌拷贝数在断奶后3天显著降低,这一趋势与结肠中的总挥发性脂肪酸和丁酸浓度变化相似,而梭菌Ⅳ群拷贝数变化则不显著。克隆和测序分析表明,仔猪结肠梭菌Ⅳ群中的优势菌为Faecalibacteriumprausnitzii,Subdoligranulum variabile以及一些未培养细菌。【结论】7日龄至14日龄仔猪结肠中梭菌Ⅳ群发生改变,但断奶对其影响不大;该菌群和结肠丁酸浓度关系还需进一步研究。     

泸型酒酒醅与窖泥中梭菌群落结构、演替和功能差异

梭菌对泸型酒风味品质的发酵形成具有重要作用,但目前对酒醅和窖泥中梭菌群落的物种组成、发酵演替规律以及代谢功能的差异尚缺少深入认识。采用分子微生态学技术,在种水平上对比了同一窖池的酒醅和窖泥中梭菌纲细菌群落的结构差异和演替规律,并通过纯培养方法分离和评价了梭菌菌株的主要挥发性脂肪酸组成差异。结果表明,窖泥发酵过程中梭菌纲细菌和总细菌的基因拷贝数比值相对稳定(71.5%–91.2%),而酒醅中梭菌的变化则较大(0.9%–36.5%)。酒醅中优势梭菌纲细菌主要是梭菌属(Clostridium,19.9%)、沉积物菌属(Sedimentibacter,8.8%)和氢孢菌属(Hydrogenispora,7.2%),而窖泥中主要为氢孢菌属(57.2%)、沉积物菌属(5.4%)和产己酸菌属(Caproiciproducens,4.9%)。窖泥及酒醅发酵过程中梭菌群落结构差异显著(P=0.001)。分离获得的20株梭菌菌株具有不同的产挥发性脂肪酸能力。结果表明,窖池中梭菌纲细菌群落存在时空异质性,其结构和功能差异对泸型酒风味形成具有影响。     

气相色谱—质谱技术对艰难梭菌细胞的挥发性脂肪酸成份的鉴定

应用气相色谱技术测定艰难梭菌培养物和悉生小鼠盲肠内含物中的挥发性脂肪酸含量,并用气相色谱—质谱技术加以鉴定。结果表明2-甲基丁酸是艰难梭菌的特征性产物,以前曾被其他作者错误地鉴定为异戊酸。     

健康与腹泻仔猪粪样中挥发性脂肪酸和菌群区系的比较

[目的]本试验通过对比健康与腹泻仔猪粪样挥发性脂肪酸( Volatile fatty acid,VFA)以及菌群的差异,初步探讨腹泻对仔猪后肠环境的影响.[方法]采集腹泻和健康仔猪粪样,气相色谱测定挥发性脂肪酸浓度;提取粪样总细菌核酸,利用变性梯度凝胶电泳(Denaturing gradient gel electrophoresis,DGGE)和Real-time PCR技术定性、定量分析总细菌和梭菌Ⅳ菌群.[结果]与健康仔猪相比,腹泻仔猪粪样中乙酸含量有升高的趋势,支链脂肪酸(Branched chain fatty acid,BCFA)含量显著降低(p＜0.05),总VFA、丙酸和丁酸含量有降低的趋势,但差异均不显著;乙酸占总挥发酸比例显著升高(p＜0.05),而丙酸及BCFA占总挥发酸比例则显著降低(p＜0.05),丁酸占总挥发酸比例有降低趋势.PCR-DGGE指纹技术分析表明:腹泻发生后,仔猪粪样中总细菌和梭菌Ⅳ菌群在DGGE图谱上并没有特异性的条带消失或出现,但相似性分析显示,腹泻仔猪样品趋于归类于同一簇.Real-time PCR定量分析显示:仔猪腹泻后,粪样中的总细菌和梭菌Ⅳ菌群的数量显著下降(p＜0.05);而大肠杆菌和乳酸杆菌的数量变化不显著.[结论]与健康仔猪相比,腹泻仔猪粪样挥发性脂肪酸组成发生改变,并且微生物区系中的一些菌群也发生变化.     

兰州地区腹泻患者艰难梭菌的感染状况调查

目的调查兰州地区腹泻患者中艰难梭菌的流行特点,揭示国内艰难梭菌感染的现况。方法通过细胞毒检测试验和酶联免疫吸附试验对206份临床粪便样品进行毒素检测。结果 206份粪便滤液经细胞毒检测有26份样品使非洲绿猴肾细胞（vero细胞）圆缩化,确认含有艰难梭菌毒素;经酶联免疫吸附试验有28份为阳性,其中23份与细胞毒检测结果一致,与细胞毒试验的符合率为88.5%。结论兰州地区住院腹泻患者中艰难梭菌感染率约为12.62%。     

泸型酒窖泥中梭菌的分离及代谢产物分析

[目的] 分离窖泥中的梭菌微生物并对其代谢产物进行评估。[方法] 对窖泥中梭菌群落的16S rRNA基因进行高通量测序;利用高丰度的梭菌OTU序列在KOMODO数据库进行培养基的预测,定向分离窖泥中梭菌菌株;采用顶空固相微萃取结合气相色谱质谱联用仪对窖泥和代表性梭菌菌株的挥发性代谢产物进行检测。[结果] 利用KOMODO数据库预测的梭菌培养基共计筛选到31株梭菌微生物,分属于梭菌属的14个种;根据风味代谢特性,这些菌株主要分为两大类,一是C.carboxidivorans、C.sporogenes和C.tyrobutyricum等产酸为主的梭菌,二是C.beijerinckii、C.butyricum和C.sphenoides等产醇为主的梭菌。[结论] 利用测序序列预测培养基有助于从窖泥中分离获得丰富的梭菌菌株,其物种和代谢能力的多样性对解析白酒复杂风味形成机理奠定了一定的基础。     

沿微山湖地区神经毒素原性酪酸梭菌的土壤分布调查

为了解神经毒素原性酪酸梭菌在微山湖地区土壤的分布情况,我们采集了该地区的土壤样品进行调查。５０份土样培养上清中,有１８份（３６％）检出了肉毒毒素,经中和试验证实均为Ｅ型。从其中的７份阳性样品中分离到产毒菌株,对分离菌株进行毒性测定、生化特性检查及其神经毒素基因的ＰＣＲ检测,所有菌株均具有Ｅ型肉毒神经毒素基因并产生相应毒素,但其生化特性与Ｅ型肉毒梭菌不同,而与酪酸梭菌一致。结果说明沿微山湖地区土壤中确实存在神经毒素原性酪酸梭菌,而且阳性率很高。对神经毒素原性酪酸梭菌的分布进行流行病学调查并从土壤中分离到该病原菌,这在国际上尚属首次。     

24株鸡源丁酸梭菌的分离鉴定及耐药基因与毒力基因携带情况

[目的]旨在对鸡源丁酸梭菌进行分离鉴定与安全性评估.[方法]利用厌氧培养方法对源自汶上芦花鸡与SPF鸡粪便样品进行丁酸梭菌的分离与纯化,挑选可疑菌落进行微生物质谱鉴定,进一步通过16S rRNA基因测序进行鉴定,16S rRNA测序结果与NCBI核苷酸数据库中丁酸梭菌的16S rRNA序列进行同源性分析;同时,进行所有...     

T-RFLP技术在人肠道柔嫩梭菌类群的组成分析中的应用

目的建立能快速筛查和比较大规模人群肠道中柔嫩梭菌类群组成结构的T-RFLP（末端限制性片段长度多态性）。方法采用T-RFLP技术特异性地分析柔嫩梭菌类群的组成,考察该方法的重复性和灵敏度。用该方法对15个志愿者肠道中的柔嫩梭菌类群进行分析,并与DGGE方法分析的结果进行对比。结果T-RFLP方法重复性高,最低能检测到群落中1%的细菌,其结果与DGGE的分析结果具有较好的一致性。结论本研究建立的柔嫩梭菌类群特异性的T-RFLP方法能够对大量肠道样品中柔嫩梭菌类群的结构进行快速、有效的筛查和比较。     

荔枝蜜中挥发性成分的指纹图谱研究

蜂蜜中挥发性成分的指纹图谱分析,是科学评价及有效控制蜂蜜质量的重要依据。本文利用顶空固相微萃取-气相色谱-质谱联用法对我国常见5个荔枝品种的30个中意蜂荔枝蜜样品进行挥发性成分分离检测,并结合中药色谱指纹图谱技术建立其指纹图谱。结果表明,不同荔枝品种的荔枝蜜样品其挥发性成分相近,共分离鉴定出41种挥发性成分,建立了由16个共有峰组成的荔枝蜜挥发性成分指纹图谱。另外,发现不同蜂种所酿造荔枝蜜间的挥发性成分存在明显差异,其中1-庚醇、正壬醇和乙酸苯乙酯这3种挥发性成分均仅在中蜂所酿造的荔枝蜜中被检出,而在意蜂所酿造的荔枝蜜中无检出。本文所建立的荔枝蜜挥发性成分指纹图谱,可为荔枝蜜的质量控制提供依据,并为生产上不同蜂种所酿造荔枝蜜的区分提供理论基础。     

Estimation of population profiles of two strains of the fly Megaselia scalaris (Diptera: Phoridae) by bootstrap simulation

Based on experimental population profiles of strains of the fly Megaselia scalaris (Phoridae), the minimal number of sample profiles was determined that should be repeated by bootstrap simulation process in order to obtain a confident estimation of the mean population profile and present estimations of the standard error as a precise measure of the simulations made. The original data are from experimental populations founded with SR and R4 strains, with three replicates, which were kept for 33 weeks by serial transfer technique in a constant temperature room (25 +/- 1.0 degrees C). The variable used was population size and the model adopted for each profile was a stationary stochastic process. By these simulations, the three experimental population profiles were enlarged so as to determine minimum sample size. After sample size was determined, bootstrap simulations were made in order to calculate confidence intervals and to compare the mean population profiles of these two strains. The results show that with a minimum sample size of 50, stabilization of means begins.     

Characterization of yeast strains by fluorescence lifetime imaging microscopy

The results of fluorescence lifetime imaging microscopy of selected yeast strains were presented and the fact that the lifetime distributions can be successfully used for strain characterization and differentiation was demonstrated. Four strains of industrially relevant yeast Saccharomyces were excited at 405 nm and the autofluorescence observed within 440-540 nm. Using statistical tools such as empirical cumulative distribution functions with Kolmogorov-Smirnov testing, the four studied strains were categorized into three different groups for normal sample size of 70 cells slide(-1) at a significance level of 5%. The differentiation of all of the examined strains from one another was shown to be possible by increasing the sample size to 420 cells, which is achievable by taking the lifetime data at six different positions in the slide.     

Prevalence of enterotoxigenic Bacteroides fragilis strains (ETBF) in the gut of children with clinical diagnosis of antibiotic associated diarrhoea (AAD)

Prevalence of enterotoxin producing Bacteroides fragilis (ETBF) strains in faecal samples of children with clinical diagnosis antibiotic associated diarrhoea (AAD) was investigated. Out of faecal samples collected from sixty children, thirty C. difficile strains were isolated. Enterotoxigenic B. fragilis (ETBF) strains were cultured from four children what made 6.7% of investigated faecal samples. Out of two samples toxinogenic C. difficile strains [tox A(+) tox B(+)] were cultured together with enterotoxinogenic B. fragilis. From sample of one child C. difficile A negative/B positive strains [tox A(-) tox B(+)] was found together with B. fragilis (ETBF). From faecal sample of one child enterotoxinogenic B. fragilis only was isolated. It was shown that in the gut of children with clinical diagnosis of (AAD) enterotoxinogenic B. fragilis (ETBF) can be present. B. fragilis (ETBF) can be observed in concomitance with toxinogenic C. difficile.     

市售冷却牛肉中主要细菌的常规分离与鉴定

利用常用纯培养的方法, 根据细菌的菌落形态、菌落颜色、革兰氏染色等常见特征, 从市售冷却牛肉中, 选取菌落形态差别比较明显的菌株共32株, 其中保鲜膜包装冷却牛肉样品共12株, 未包装冷却牛肉样品共20株; 同时选取两样品中的优势菌株各4株进行进一步的研究(8株细菌编号为：S01~S08, 其中S01~S04为未包装冷却牛肉样品; S05~S08为保鲜膜包装冷却牛肉样品), 通过ARDRA(Amplified ribosomal DNA restriction analysis) 以及16S rDNA 序列等进行分类研究, 确定该细菌的分类地位, 并结合形态、常规生理生化特性进行鉴定, 确定各细菌所属种。实验表明：S01为假单胞菌属中的恶臭假单胞菌(Pseudomonas putida), S02为希瓦氏菌属下的(Shewanella cincia sp.), 而S03和S05为希瓦氏菌属下的腐败希瓦氏菌(Shewanella putrefaciens), S04为窄食单胞菌属中的嗜麦芽窄食单胞菌(Stenotrophomonas maltophilia), S06为嗜冷杆菌(Psychrobacter sp.), S07为葡萄球菌属中的松鼠葡萄球菌(Staphylococcu sciuri), S08为微杆菌属中的产左聚糖微杆菌(Microbacterium laevaniformans)。证明两样品的共有优势菌为希瓦氏菌属。通过对样品可培养微生物情况进行初步的调查分析, 为冷却肉加工工艺提供一定的理论基础。     

Application of Salmonella strains with altered nitroreductase and O-acetyltransferase activities to the evaluation of the mutagenicity of airborne particles

The Ames test was applied to evaluation of the mutagenicity of month's samples of airborne particles from the center of Wroc?aw (SW Poland) collected in August and December 1997. The strains used for the study were TA 98, TA 100 and their derivatives: TA 98 NR, YG 1021, YG 1024, YG 1026, YG 1029, YG 1041, YG 1042. Both studied samples were mutagenic for almost all tested strains, with the exception of the August sample which did not influence the strain TA 100 without the metabolic activation with the S9 fraction. The December sample exhibited higher genotoxic activity than the August sample. Mutagenicity ratios of the strains with reduced nitroreductase and O-acetyltransferase activities were higher, and of the strain without the nitroreductase--lower than those of the parent strains. This indicates that nitro and amino derivatives of PAHs are responsible for the significant proportion of total mutagenicity of the studied samples of particulates. Metabolic activation with the S9 fraction caused the increase of the mutagenic activity of the samples, which indicates the presence of promutagens. The GC-MS analysis revealed the presence of known indirect mutagens from the PAHs group.     

A method for the enumeration of Aeromonas bacteriophage in aquatic environments

K.P. FLINT. 1996. Bacteriophage were isolated against type strains and environmental isolates of Aeromonas hydrophila, Aeromonas sobria and Aeromonas caviae . A most probable number method for estimating the number of bacteriophage in a water sample was devised and tested using some of these isolates. The maximum number of bacteriophage against all three type strains were found in water from below a sewage effluent outfall. This corresponds to the increased numbers of each species of bacterium also found in this water sample. High numbers of bacteriophage against Aer. hydrophila were also found in the lake sample examined. Bacteriophage against Aer. caviae were rare in water samples other than those contaminated with sewage effluent.     

Activity of microorganisms decomposing cholesterol]

The rates of cholesterol decomposition was compared among cell suspensions of different microorganisms. Fifty seven cultures were studied: 2 strains of actinomycetes, 23 strains of proactinomycetes, 22 strains of mycobacteria, and 10 strains of bacteria. During four hours of incubation, 11 strains virtually did not decompose cholesterol at all, 10 strains decomposed it by up to 20 per cent, 21 strains by 20 to 70 per cent, and 15 strains by 70 to 100 per cent. The highest activity was displayed by Mycobacterium rubrum 297 and Mycobacterium sp. 2B, which decomposed all cholesterol in the sample within 4 hours. The high activity was also displayed by Proactinomyces sp. 2006, Nocardia opaca JMET 7030, and Nacardia erythropolis JMET 7252.     

铜绿假单胞菌对11种抗生素的耐药性差异

目的探讨不同标本分离铜绿假单胞菌对11种抗生素耐药性的差异,指导临床合理使用抗生素。方法按常规方法培养分离后,经VITEK-AMS60或VITEK-II自动微生物鉴定分析仪的鉴定,用Kirty-Bauer法做药物敏感试验。结果尿液与血液之间,以及尿液与伤口分泌物之间,分离株均对所检测的11种抗生素的耐药性差异有非常显著性（P〈0.01）,尿液与穿刺液分离菌对除亚胺培南和美洛培南外的9种抗生素的耐药性差异有非常显著性（P〈0.01）,血液与穿刺液、血液与伤口分泌物和穿刺液与伤口分泌物间,除穿刺液与伤口分泌物分离菌对美洛培南的耐药性差异有显著性（P〈0.05）外,其他差异均无显著性（P〉0.05）。结论不同标本来源铜绿假单胞菌对哌拉西林等11种抗生素存在耐药性差异。     

Plasmid diversity in senescent and nonsenescent strains of Neurospora

Summary A sample of 171 natural isolates of Neurospora crassa and Neurospora intermedia was tested for senescence. Of these, 28 strains senesced within the duration of the experiment. These senescent strains, together with a selection of nonsenescent strains, were examined for the presence of mitochondrial plasmids. This was done by digesting mitochondrial DNA preparations with proteinase K, and running these samples on agarose gels. Most of the strains examined, both senescent and nonsenescent, contained plasmids, many of them new. Some new plasmids were linear, as inferred from their resistance to 5 exonuclease and sensitivity to 3 exonuclease. New circular plasmids were also found. Some strains carry several plasmids, and mixtures of circular and linear elements were common. A cross-homology study was performed on a sample of plasmid-bearing strains, and several cases of apparent relatedness were found, some between strains from distant geographical locations. Linear plasmids homologous to the maranhar linear senescence plasmid were quite common. A new member of the LaBelle circular plasmid homology group was found. In the sample tested for homology, no strains contained elements related to the kalilo linear senescence plasmid. The relationship of the new plasmids to senescence is not known. In addition to plasmid monomers, several different types of derivatives were found. The kalilo linear plasmid was found to occur in linear and circular forms of low mobility, presumed to be giant concatamers, and, in some strains, variant sibling structures and ladders of short derivatives were found. Circular plasmids also gave rise to extensive ladders on electrophoresis, probably representing different relaxation states and head-to-tail concatameric series. Some such forms migrated more slowly than mitochondrial DNA. One unique type of plasmid modification observed was a pair of linear elements that had apparently arisen de novo which showed homology to a circular plasmid.     

全球专利微生物菌种近20年的保藏与发放情况分析

本文基于世界知识产权组织（WIPO）公开的“国际保藏单位2001-2019年专利微生物保藏与发放”数据进行统计分析。结果表明：全球专利微生物保藏量呈现稳步增长态势，中国专利菌种保藏量位列全球第一，保藏全球近四成专利菌种（31386株，占比39.86%）；2018年后全球菌种发放量陡增，其中美国是专利菌种发放量最多的国家（24153株，占全球发放量的96.63%），中国专利菌种的发放率处于较低水平（1034株，发放率3.29%）。中国专利菌种“重保藏、轻发放”的现象严重，需要适当提升产业化开发利用水平。