Effect of Molecular Orientation of Donor Polymers on Charge Generation and Photovoltaic Properties in Bulk Heterojunction All‐Polymer Solar Cells

All‐polymer solar cells (all‐PSCs) utilizing p‐type polymers as electron‐donors and n ‐typepolymers as electron‐acceptors have attracted a great deal of attention, and their efficiencies have been improved considerably. Here, five polymer donors with different molecular orientations are synthesized by random copolymerization of 5‐fluoro‐2,1,3‐benzothiadiazole with different relative amounts of 2,2′‐bithiophene (2T) and dithieno[3,2‐b;2′,3′‐d]thiophene (DTT). Solar cells are prepared by blending the polymer donors with a naphthalene diimide‐based polymer acceptor (PNDI) or a [6,6]‐phenyl C₇₁‐butyric acid methyl ester (PC₇₁BM) acceptor and their morphologies and crystallinity as well as optoelectronic, charge‐transport and photovoltaic properties are studied. Interestingly, charge generation in the solar cells is found to show higher dependence on the crystal orientation of the donor polymer for the PNDI‐based all‐PSCs than for the conventional PC₇₁BM‐based PSCs. As the population of face‐on‐oriented crystallites of the donor increased in PNDI‐based PSC, the short‐circuit current density (J_SC) and external quantum efficiency of the devices are found to significantly improve. Consequently, device efficiency was enhanced of all‐PSC from 3.11% to 6.01%. The study reveals that producing the same crystal orientation between the polymer donor and acceptor (face‐on/face‐on) is important in all‐PSCs because they provide efficient charge transfer at the donor/acceptor interface.     

Modulating the Molecular Packing and Nanophase Blending via a Random Terpolymerization Strategy toward 11% Efficiency Nonfullerene Polymer Solar Cells

Despite rapid advances in the field of nonfullerene polymer solar cells (NF‐PSCs), successful examples of random polymer‐based NF‐PSCs are limited. In this study, it is demonstrated that random donor polymers based on thieno[2′,3′:5′,6′]pyrido[3,4‐g ]thieno[3,2‐c ]isoquinoline‐5,11(4H ,10H )‐dione (TPTI) containing two simple thiophene (T) and bithiophene (2T) electron‐rich moieties (PTTI‐Tx ) can be promising materials for the fabrication of highly efficient NF‐PSCs. With negligible influence on optical bandgaps and energy levels, the crystalline behavior of PTTI‐Tx polymers was modulated by varying the T:2T ratio in the polymer backbone; this resulted in the formation of different microstructures upon blending with a nonfullerene m ‐ITIC acceptor in NF‐PSCs. In particular, a PTPTI‐T70:m ‐ITIC system enabled favorable small‐scale phase separation with an increased population of face‐on oriented crystallites, thereby boosting the processes of effective exciton dissociation and charge transport in the device. Consequently, the highest power conversion efficiency of 11.02% with an enhanced short‐circuit current density of 17.12 mA cm^?2 is achieved for the random polymer‐based NF‐PSCs thus far. These results indicate that random terpolymerization is a simple and practical approach for the optimization of a donor polymer toward highly efficient NF‐PSCs.     

SANTA: Quantifying the Functional Content of Molecular Networks

Linking networks of molecular interactions to cellular functions and phenotypes is a key goal in systems biology. Here, we adapt concepts of spatial statistics to assess the functional content of molecular networks. Based on the guilt-by-association principle, our approach (called SANTA) quantifies the strength of association between a gene set and a network, and functionally annotates molecular networks like other enrichment methods annotate lists of genes. As a general association measure, SANTA can (i) functionally annotate experimentally derived networks using a collection of curated gene sets and (ii) annotate experimentally derived gene sets using a collection of curated networks, as well as (iii) prioritize genes for follow-up analyses. We exemplify the efficacy of SANTA in several case studies using the S. cerevisiae genetic interaction network and genome-wide RNAi screens in cancer cell lines. Our theory, simulations, and applications show that SANTA provides a principled statistical way to quantify the association between molecular networks and cellular functions and phenotypes. SANTA is available from http://bioconductor.org/packages/release/bioc/html/SANTA.html.     

Overcoming Fill Factor Reduction in Ternary Polymer Solar Cells by Matching the Highest Occupied Molecular Orbital Energy Levels of Donor Polymers

Despite the potential of ternary polymer solar cells (PSCs) to improve photocurrents, ternary architecture is not widely utilized for PSCs because its application has been shown to reduce fill factor (FF). In this paper, a novel technique is reported for achieving highly efficient ternary PSCs without this characteristic sharp decrease in FF by matching the highest occupied molecular orbital (HOMO) energy levels of two donor polymers. Our ternary device—made from a blend of wide‐bandgap poly[4,8‐bis(2‐ethylhexyloxy)benzo[1,2‐b:4,5‐b′]dithiophene‐alt‐2,5‐dioctyl‐4,6‐di(thiophen‐2‐yl)pyrrolo[3,4‐c]pyrrole‐1,3(2H,5H)‐dione) (PBDT‐DPPD) polymer, narrow‐bandgap poly[4,8‐bis[5‐(2‐ethylhexyl)‐2‐thienyl]benzo[1,2‐b:4,5‐b′]dithiophene‐alt‐(4‐(2‐ethylhexyl)‐3‐fluorothieno[3,4‐b]thiophene‐)‐2‐carboxylate‐2‐ 6‐diyl)] (PTB7‐Th) polymer, and [6,6]‐phenyl C₇₀‐butyric acid methyl ester (PC₇₀BM)—exhibits a maximum power conversion efficiency of 10.42% with an open‐circuit voltage of 0.80 V, a short‐circuit current of 17.61 mA cm^?2, and an FF of 0.74. In addition, this concept is extended to quaternary PSCs made by using three different donor polymers with similar HOMO levels. Interestingly, the quaternary PSCs also yield a good FF (≈0.70)—similar to those of corresponding binary PSCs. This study confirms that the HOMO levels of the polymers used on the photoactive layer of PSCs are a crucial determinant of a high FF.     

Quantifying the Socio-Economic Benefits of Reducing Industrial Dietary Trans Fats: Modelling Study

Background

Coronary Heart Disease (CHD) remains a leading cause of UK mortality, generating a large and unequal burden of disease. Dietary trans fatty acids (TFA) represent a powerful CHD risk factor, yet to be addressed in the UK (approximately 1% daily energy) as successfully as in other nations. Potential outcomes of such measures, including effects upon health inequalities, have not been well quantified. We modelled the potential effects of specific reductions in TFA intake on CHD mortality, CHD related admissions, and effects upon socioeconomic inequalities.

Methods & Results

We extended the previously validated IMPACTsec model, to estimate the potential effects of reductions (0.5% & 1% reductions in daily energy) in TFA intake in England and Wales, stratified by age, sex and socioeconomic circumstances. We estimated reductions in expected CHD deaths in 2030 attributable to these two specific reductions. Output measures were deaths prevented or postponed, life years gained and hospital admissions. A 1% reduction in TFA intake energy intake would generate approximately 3,900 (95% confidence interval (CI) 3,300–4,500) fewer deaths, 10,000 (8,800–10,300) (7% total) fewer hospital admissions and 37,000 (30,100–44,700) life years gained. This would also reduce health inequalities, preventing five times as many deaths and gaining six times as many life years in the most deprived quintile compared with the most affluent. A more modest reduction (0.5%) would still yield substantial health gains.

Conclusions

Reducing intake of industrial TFA could substantially decrease CHD mortality and hospital admissions, and gain tens of thousands of life years. Crucially, this policy could also reduce health inequalities. UK strategies should therefore aim to minimise industrial TFA intake.     

Influence of Donor Polymer on the Molecular Ordering of Small Molecular Acceptors in Nonfullerene Polymer Solar Cells

Nonfullerene polymer solar cells (PSCs) based on polymer donors and nonfullerene small molecular acceptors (SMAs) have recently attracted considerable attention. Although much of the progress is driven by the development of novel SMAs, the donor polymer also plays an important role in achieving efficient nonfullerene PSCs. However, it is far from clear how the polymer donor choice influences the morphology and performance of the SMAs and the nonfullerene blends. In addition, it is challenging to carry out quantitative analysis of the morphology of polymer:SMA blends, due to the low material contrast and overlapping scattering features of the π–π stacking between the two organic components. Here, a series of nonfullerene blends is studied based on ITIC‐Th blended with five different donor polymers. Through quantitative morphology analysis, the (010) coherence length of the SMA is characterized and a positive correlation between the coherence length of the SMA and the device fill factor (FF) is established. The study reveals that the donor polymer can significantly change the molecular ordering of the SMA and thus improve the electron mobility and domain purity of the blend, which has an overall positive effect that leads to the enhanced device FF for nonfullerene PSCs.     

Molecular Modelling of Protein-Nucleic Acid Interactions

Abstract

Computer modeling techniques to study the interaction of proteins with nucleic acids are presented. The methods utilize information from genetic and chemical modification experiments and macromolecular structural constraints. These techniques, in addition to computer model building procedures and theoretical energy calculations, are illustrated for the study of the lac and cro repressor-operator systems. Our predicted interactions between lac and its operator agree with those recently reported for lac based upon sequence alignment with the cro repressor. Several molecular models of the putative helical segment of cro interacting with its OR3 operator are presented. These models are reflective of intermediate conformations experienced by the repressor in recognition of the operator sequence. The results of our studies are further discussed in terms of the design of short peptides interacting with nucleic acid sequences and the evolutionary requirements in establishing these repressor interactions.     

Translocation of Rodlike Polymers through Membrane Channels

A theory of channel-facilitated transport of long rodlike macromolecules through thin membranes under the influence of a driving force of arbitrary strength is developed. Analytic expressions are derived for the translocation probability and the Laplace transform of the probability density of time that a macromolecule spends in the channel. We also derive expressions for the (conditional) probability densities of time spent in the channel by translocating and nontranslocating (returning back) macromolecules. These results are used to study how the distribution of the macromolecule lifetime in the channel depends on a polymer chain length and the driving force. It is shown that depending on the values of the parameters, the lifetime probability density may have one or two peaks. Our theory is a generalization of the theory developed by Lubensky and Nelson, who were inspired by recent experiments on driven translocation of single-stranded RNA and DNA molecules through single channels in narrow membranes.     

Molecular Informatics: Quantifying Information Patterns in the Genetic Code

The Genetic Code appears to be a non-random triplet code in which both the position of a nucleotide within a codon, as well as its physicochemical nature, contribute to the identity of the expressed amino acid. The non-randomness of the code is manifested in apparent patterns in the mapping from codon to amino acid; some of the patterns seem quite clear, while other more subtle patterns are less obvious or certain. Discussion in the literature has been largely qualitative in nature. In this study, we employ evolution similarity data, widely employed in the field of bioinformatics, to explore the patterns relating nucleotide features to amino acids. The results support a hierarchical order based on position and physicochemical features proposed by Jimenez-Montaño et al., [“The Hypercube Structure of the Genetic Code Explains Conservative and Non-Conservative Amino Acid Substitutions in vivo and in vitro” Biosystems (1996) 39, pp. 117–125]. The method also provides a quantitative approach to testing the importance of other putative patterns.     

银杏内酯C分子烙印聚合物的制备

以混合银杏内酯为模板分子,它们与单体AA预识别的过程中,利用其在识别性能上的差异,制备了对银杏内酯C有优先选择识别作用的分子烙印聚合物.用红外光谱表征了分子烙印聚合物,并通过紫外光谱和高效液相色谱对其选择吸附性能进行分析.结果表明,所制备的分子烙印聚合物的最大吸附量为15.5 mg/g,混合银杏内酯经MIP选择性吸附后,银杏内酯C的含量提高了12.16%.     

Mechanistic Modelling of Polymer Pyrolysis Using Monte Carlo Methods

Abstract

Reaction modelling techniques using Monte Carlo Simulation are applied to the reactions of poly (arylether sulfones). We find that structure, reactions and diffusions may be described quantitatively in terms of a dynamic reaction lattice.     

Molecular Modelling of Helix Stability in Carrageenans

Molecular models of disaccharides, and single and double helices up to eight monomers in length have been constructed of the two types of glycosidic linkage in the carrageenan chain. These links are a galactose to anhydrogalactose link (GA link), and an anhydrogalactose to galactose link (AG link). These models are also based on 3-carrageenan, which contains a 4-sulphate galactose ring. The effects of the sulphate groups on the conformation of the helices may be seen by the angles of $ϕ$ϕ and N explored during the simulations by the AG and GA linkages. It has been observed that the molecule can explore a greater area of conformational space about the GA link than the AG link. This could be due to steric hindrance caused by the bulky sulphate group near the AG link. The sulphate group is further away from the GA link than from the AG link, and this may provide a possible explanation for the relatively unhindered movement about the GA link compared to the AG link. The results have also shown that the conformational space for the AG linkages, as well as the GA linkages vary between different lengths of the polysaccharide chain. Single helix models show little stability in molecular dynamics simulation, whereas the eight monomer double helix model is more stable than a six monomer double helix model.     

Quantifying Cell Adhesion through Impingement of a Controlled Microjet

The impingement of a submerged, liquid jet onto a cell-covered surface allows assessing cell attachment on surfaces in a straightforward and quantitative manner and in real time, yielding valuable information on cell adhesion. However, this approach is insufficiently characterized for reliable and routine use. In this work, we both model and measure the shear stress exerted by the jet on the impingement surface in the micrometer-domain, and subsequently correlate this to jet-induced cell detachment. The measured and numerically calculated shear stress data are in good agreement with each other, and with previously published values. Real-time monitoring of the cell detachment reveals the creation of a circular cell-free area upon jet impingement, with two successive detachment regimes: 1), a dynamic regime, during which the cell-free area grows as a function of both the maximum shear stress exerted by the jet and the jet diameter; followed by 2), a stationary regime, with no further evolution of the cell-free area. For the latter regime, which is relevant for cell adhesion strength assessment, a relationship between the jet Reynolds number, the cell-free area, and the cell adhesion strength is proposed. To illustrate the capability of the technique, the adhesion strength of HeLa cervical cancer cells is determined ((34 ± 14) N/m²). Real-time visualization of cell detachment in the dynamic regime shows that cells detach either cell-by-cell or by collectively (for which intact parts of the monolayer detach as cell sheets). This process is dictated by the cell monolayer density, with a typical threshold of (1.8 ± 0.2) × 10⁹ cells/m², above which the collective behavior is mostly observed. The jet impingement method presents great promises for the field of tissue engineering, as the influence of both the shear stress and the surface characteristics on cell adhesion can be systematically studied.     

Molecular medicine through the kaleidoscope

The 30th Miami Winter Symposium: Molecular Biology in the Conquest of DiseaseMiami, FL, USA, 7–11 February 1998     

On the Lubensky-Nelson Model of Polymer Translocation through Nanopores

We revisit the one-dimensional stochastic model of an earlier study by D. K. Lubensky and D. R. Nelson for the electrically driven translocation of polynucleotides through α-hemolysin pores. We show that the model correctly describes two further important properties of the experimentally observed translocation time distributions, namely their spread (width) and their exponential decay. The resulting overall agreement between theoretical and experimental translocation time distributions is thus very good.     

Molecular Dynamics Simulation of Linear Polymers in a Solvent

This paper reports a series of simulations of a single linear polymer chain in solution. Both the monomer units and the solvent particles are represented by “beads” which interact via a purely repulsive shifted Lennard-Jones potential; the chains themselves are constructed by linking beads with relatively stiff elastic bonds. The chain lenghts range from 8 to 48 beads, and the total system size is between 1000 and 14000 beads. The static and dynamic properties of the polymer chains obtained from long simulations of these systems (over 10⁶ timesteps) are discussed, and the size and density dependence of the chain behavior examined.     

Conjugated Polymers Based on Difluorobenzoxadiazole toward Practical Application of Polymer Solar Cells

To advance polymer solar cells (PSCs) toward real‐world applications, it is crucial to develop materials that are compatible with a low‐cost large‐scale manufacturing technology. In this context, a practically useful polymer should fulfill several critical requirements: the capability to provide high power conversion efficiencies (PCEs) via low‐cost fabrication using environmentally friendly solvents under mild thermal conditions, resulting in an active layer that is thick enough to minimize defects in large‐area films. Here, the development of new photovoltaic polymers is reported through rational molecular design to meet these requirements. Benzodithiophene (BDT)‐difluorobenzoxadiazole (ffBX)‐2‐decyltetradecyl (DT), a wide‐bandgap polymer based on ffBX and BDT emerges as the first example that fulfills the qualifications. When blended with a low‐cost acceptor (C₆₀‐fullerene derivative), BDT‐ffBX‐DT produces a PCE of 9.4% at active layer thickness over 250 nm. BDT‐ffBX‐DT devices can be fabricated from nonhalogenated solvents at low processing temperature. The success of BDT‐ffBX‐DT originates from its appropriate electronic structure and charge transport characteristics, in combination with a favorable face‐on orientation of the polymer backbone in blends, and the ability to form proper phase separation morphology with a fibrillar bicontinuous interpenetrating network in bulk‐heterojunction films. With these characteristics, BDT‐ffBX‐DT represents a meaningful step toward future everyday applications of polymer solar cells.