花色变异的分子基础与进化模式研究进展

近年来国际上风行的生态学与进化生物学的学科整合已成为生物学发展的一个趋势。寻找适合的生物学系统来进行从表型到基因型的综合研究是推动这一整合向纵深发展的一项必要的和带探索性的工作。被子植物花色的形成机理和有关代谢途径上的结构和调控基因在若干模式植物中已有相当了解,使花色成为适合生态与进化生物学研究的一个首选性状, 为进一步了解野生种中花色的形成机制奠定了基础。本文着重介绍旋花科(Convolvulaceae)番薯属(Ipomoea)花青素代谢途径的分子遗传学、生物化学和生态学工作, 试图从多学科的角度提供有关花色自然变异的知识背景, 并指出未解决的生物学问题和预期今后可能出现的发展。     

小型哺乳动物生理生态学研究与进化思想

动物生理生态学是一门利用生理学的手段和方法研究与动物的生存和繁殖相关的生态学问题的交叉学科,
旨在阐明动物对环境适应和进化的生理机制。在近70 年的发展历程中,进化生物学的思想和理论越来越紧密地
融入到生理生态学的研究中,同时生理生态学的研究结果也在充实着进化生物学理论的发展。本文根据作者多
年的研究经历,从动物的体型和代谢特征、消化生理、生态免疫和冬眠等几个侧面,简述了小型哺乳动物生理
生态学的某些研究进展和进化思想对该领域的影响。     

宏观生态过程的代谢调控研究进展

宏观（生态学）和微观（分子生物学）生命科学的交汇犹如两翼的联动将带动生命科学再次腾飞.综述了由宏观生态过程和代谢的个体大小依赖的定量规律为核心的代谢生态学相关研究进展.在综合分析最新动态和我们研究心得的基础上,建立了植物有效资源与耦合的光、水分和化学营养元素间关系的立方体模型,明确提出了生态过程（或代谢）速率是环境资源、现有生物量（反应器）和分子系统三要素相互作用结果的规律,并预测作为宏观生态过程与微观生物学的交汇点,代谢生态学的发展有可能带动生命科学的整合和进一步腾飞.     

《行为生态学分析》简介

《行为生态学分析》(Analysis in Behavioral Ecology)一书,由美国乔治·梅森大学的Luther Brown和俄亥俄州大学的Jerry F.Downhower教授共同编著,于1988年由马萨诸塞州Sinauer联合出版公司出版,它是为从事动物生态学实验和野外工作者编著的一本实用性很强的指导手册。行为生态学的研究途径很多,从畜牧业的实践方法到心理学的比较方法,直到生物学的进化途径。每种途径都有各自所要解决的问题体系,有各自不同的分析和解释方法。本书所涉及的是进化途径,这是一种从生态学、特性论、进化理论、种群生物学、遗传学以及从不同意义上同生物生存和     

瓜叶菊花色性状形成机理的研究进展

瓜叶菊是拥有多种花色品种资源的观赏植物,同时具有蓝色、斑色等观赏植物中稀缺的花色表型,不同花色品种具有多种花青素代谢途径,解析其花色性状形成的分子机制能够为观赏植物的分子育种提供理论依据,其中鉴定的关键基因能够为蓝色花新品种培育提供宝贵的基因资源。在对瓜叶菊多年研究的基础上,本文从瓜叶菊特殊的花青素结构、花青素生物合成调控途径及其花色研究的主要技术手段方面,综述了近20年来瓜叶菊花色研究的进展,具体内容包括：（1）瓜叶菊不同色系呈色的色素基础,尤其是蓝色花品种中特殊的多聚酰化色素结构;（2）多聚酰化修饰相关糖基化、酰基化修饰的瓜叶菊花青素代谢途径的基因,以及调控花色、花斑形成的MYB、MADS-box等转录因子的功能;（3）瓜叶菊中进行花色研究相关的高效遗传转化体系和病毒介导的基因沉默（VIGS,virus-induced gene silencing）体系,及其在花色研究中的研究进展。本文旨在为后续瓜叶菊及其他花卉花色研究和分子育种提供参考。     

生态基因组学研究进展

生态基因组学是一个整合生态学、分子遗传学和进化基因组学的新兴交叉学科。生态基因组学将基因组学的研究手段和方法引入生态学领域,通过将群体基因组学、转录组学、蛋白质组学等手段与方法将个体、种群及群落、生态系统不同层次的生态学相互作用整合起来,确定在生态学响应及相互作用中具有重要意义的关键的基因和遗传途径,阐明这些基因及遗传途径变异的程度及其生态和进化后果的特征,从基因水平探索有机体响应天然环境(包括生物与非生物的环境因子)的遗传学机制。生态基因组学的研究对象可以分为模式生物与非模式生物两大类。拟南芥、酿酒酵母等模式生物在生态基因组学领域发挥了重要作用。随着越来越多基因组学技术的开发与完善,越来越多的非模式生物生态基因组学的研究将为生态学的发展提供重要的理论与实践依据。生态基因组学最核心的方法包括寻找序列变异、研究基因差异表达和分析基因功能等方法。生态基因组学已广泛渗透到生态学的相关领域中,将会在生物对环境的响应、物种间的相互作用、进化生态学、全球变化生态学、入侵生态学、群落生态学等研究领域发挥更大的作用。     

植物次生代谢基因簇研究进展

类似于原核生物的操纵子,在真核生物（如酵母、真菌、昆虫等）基因组中也出现了彼此功能相关的非同源基因成簇存在的现象。这些基因形成基因簇,可参与多种次生代谢途径。近年来,植物中也发现了越来越多的参与次生代谢产物合成的基因簇,它们已成为植物生物学研究的热点。本文总结并分析了植物中已鉴定的次生代谢基因簇。这些基因簇存在于玉米（Zea mays L.）、水稻（Oryza sativa L.）、拟南芥（Arabidopsis thaliana（L.） Heynh.）、番茄（Solanum lycopersicum L.）等植物的基因组中,分别参与合成苯并噁唑嗪酮类、萜类和生物碱类等次生代谢产物。本文通过解析这些基因簇的组成及结构特点,对其特征进行总结,探讨了基因簇形成的分子机理及其调控机制,对植物次生代谢基因簇在合成生物学及代谢工程学中的研究方向和应用前景进行了展望。     

《动物学报》稿约

本学报为动物学综合性学术期刊（双月刊）,国内、外发行,刊登动物学各研究领域（特别是生态学、行为学、进化生物学、生理学和生物化学等）中原创性的研究论文。优先发表创新突出、理论性强和有关中国特有动物的研究论文,并刊登特定研究领域中的综述（以特约稿为主）以及新书评介和会议信息等。     

浅谈“进化生态学”

进化生态学是一门新兴学科。关于生态学、进化论以及进化生物学的著作汗牛充栋,而关于进化生态学的著作却如凤毛麟角,难以寻觅。为什么？因为进化生态学是结合进化生物学和生态学的边缘学科,前者是研究物种起源、演化的科学,后者是研究生物与环境之间关系的科学;一门...     

植物表型可塑性研究进展

表型可塑性已成为生态进化发育生物学的核心概念,很大程度上由于植物可塑性研究的主要贡献,但人们仍远未完全了解表型可塑性的原因和结果。从整体角度理出表型可塑性研究发展的基本脉络,介绍研究内容、途径和简史,聚焦于几个主要方面的研究进展及发展方向。现代可塑性研究的兴盛始于关于可塑性的进化学重要性的一篇综述,从现象的描述、对其遗传基础和可塑性本身进化的讨论,发展到探索其背后的发育机制、植物生长与适应策略、生态学影响等。未来可塑性研究应在重新理解和评价表型可塑性及其适应性的基础上,更关注自然条件下环境因子和可塑响应的复杂性。表型可塑性的生态-进化学意义仍将是未来研究的重点。     

Extensive evolutionary rate variation in floral color determining genes in the genus Ipomoea

Flower color is an important adaptive trait in many plant species because it determines reproductive success through differential attractiveness to insect pollinators. The genus Ipomoea is a pan tropically distributed plant genus characterized by showy flowers that often differ in color among closely related species. Flower color is determined primarily by products of the anthocyanin biosynthesis pathway. To determine whether flower color evolution among members of the genus is driven by adaptive molecular evolution of the anthocyanin pathway genes, we analyzed data from 10 genes sequenced from 19 species of Ipomoea . Six protein-coding genes from the anthocyanin pathway were drawn for evolutionary analysis in addition to three genes from the unrelated leucine biosynthesis pathway and one MADS box regulatory gene for comparison. The analyses provided: (i) no convincing evidence for positive selection on anthocyanin pathway structural genes, or on the other sampled genes, despite shifts in flower color among species included in the sample; (ii) pathway position correlated weakly with estimates of the intensity of evolutionary constraint on the anthocyanin pathway enzyme coding genes; and (iii) there was substantial gene-specific heterogeneity in the rates of synonymous site evolution. Synonymous rate heterogeneity does not appear to be accounted for by codon bias or local contextual or compositional sequence differences, leading us to implicate heterogeneous rates of mutation among genes as the most probable cause of synonymous rate heterogeneity.     

Temperature-sensitive anthocyanin production in flowers of Plantago lanceolata

Flower color in the weedy perennial Plantago lanceolata is phenotypically plastic. Darker flowers are produced at cooler ambient temperatures, and circumstantial evidence suggests that this is adaptive. The goal of this project was to investigate the chemical basis for the color plasticity. To test the hypothesis that increased anthocyanin production at low temperatures underlies the plasticity, extracts of P. lanceolata flowers produced at warm and cool temperatures were analyzed using UV/visible spectrophotometry coupled with mass spectrometry. Mass spectrometry allowed us to compare relative abundances of individual anthocyanins. Seventeen anthocyanins, derived from both cyanidin and delphinidin branches of the anthocyanin biosynthetic pathway, were detected. Most of these significantly increased in abundance under cool conditions. Genotypes differed significantly in anthocyanin levels and in their sensitivity to temperature change. Genotypes that showed greater floral color plasticity tended to show also greater temperature sensitivity with respect to anthocyanin production. Data suggest that the temperature regulation of the anthocyanin biosynthetic pathway occurs both upstream and downstream of the divergence of the cyanidin and delphinidin branches. The degree of temperature sensitivity, i.e. phenotypic plasticity, appears to be controlled downstream, whereas the overall temperature effect appears to be controlled upstream.     

Digital photography provides a fast,reliable, and noninvasive method to estimate anthocyanin pigment concentration in reproductive and vegetative plant tissues

Anthocyanin pigments have become a model trait for evolutionary ecology as they often provide adaptive benefits for plants. Anthocyanins have been traditionally quantified biochemically or more recently using spectral reflectance. However, both methods require destructive sampling and can be labor intensive and challenging with small samples. Recent advances in digital photography and image processing make it the method of choice for measuring color in the wild. Here, we use digital images as a quick, noninvasive method to estimate relative anthocyanin concentrations in species exhibiting color variation. Using a consumer‐level digital camera and a free image processing toolbox, we extracted RGB values from digital images to generate color indices. We tested petals, stems, pedicels, and calyces of six species, which contain different types of anthocyanin pigments and exhibit different pigmentation patterns. Color indices were assessed by their correlation to biochemically determined anthocyanin concentrations. For comparison, we also calculated color indices from spectral reflectance and tested the correlation with anthocyanin concentration. Indices perform differently depending on the nature of the color variation. For both digital images and spectral reflectance, the most accurate estimates of anthocyanin concentration emerge from anthocyanin content‐chroma ratio, anthocyanin content‐chroma basic, and strength of green indices. Color indices derived from both digital images and spectral reflectance strongly correlate with biochemically determined anthocyanin concentration; however, the estimates from digital images performed better than spectral reflectance in terms of r² and normalized root‐mean‐square error. This was particularly noticeable in a species with striped petals, but in the case of striped calyces, both methods showed a comparable relationship with anthocyanin concentration. Using digital images brings new opportunities to accurately quantify the anthocyanin concentrations in both floral and vegetative tissues. This method is efficient, completely noninvasive, applicable to both uniform and patterned color, and works with samples of any size.     

二乔玉兰开花过程中花色变化的生理生化机制

以4年生二乔玉兰不同花期外层花瓣为试材,测定其在开花过程中花瓣色度值、花色苷、类黄酮、可溶性糖含量、细胞pH值以及相关酶活性的变化,以探讨二乔玉兰花色呈色机理。结果显示:(1)随着花期的推移,苯丙氨酸解胺酶(PAL)和查尔酮异构酶(CHI)活性逐渐减弱,细胞pH值逐渐变大,可溶性糖、花色苷、类黄酮含量不断降低,而花瓣明亮度增强,红色度以及彩色度减弱,且不同花期各参数值之间差异显著。(2)花瓣可溶性糖含量、PAL和CHI的活性与其花色素苷、类黄酮含量变化之间呈显著正相关关系,花瓣pH值的变化、明亮度L*值与花色素苷、类黄酮含量之间呈显著负相关,色相值a*与花色苷含量的变化呈显著正相关。研究表明,二乔玉兰花瓣花色苷和类黄酮含量的高低可以影响其花色的深浅,可溶性糖含量、PAL和CHI活性、细胞pH通过参与一定的生理代谢来调节花色素的形成,进而引起二乔玉兰花色色调的改变。     

Maternal flower color,ultraviolet protection,and germination in Ipomopsis aggregata (Polemoniaceae)

Transgenerational interactions between flower color, seed quality, and seedling performance have rarely been investigated. The ecological model, Ipomopsis aggregata, is a great candidate for examining the maternal effects of flower color because it is a mostly scarlet-flowering plant which shows color polymorphism within natural populations. Anthocyanin, the red flavonoid pigment which gives these flowers color, has been shown to act as an ultraviolet (UV) protectant by shielding chloroplasts and acting as an antioxidant. This study was conducted on scarlet- and fuchsia-flowering maternal plants and their seeds from natural populations in Colorado. Dark-flowering (scarlet) maternal plants from these populations had consistently higher foliar anthocyanin content, photosystem efficiency, and chlorophyll content than light-flowering (fuchsia) plants over a 3-year period in the field. Seeds from a subset of these maternal plants were counted, weighed, and germinated in a growth chamber. Photosystem efficiency, vegetative anthocyanin content, chlorophyll content, and biomass were measured on germinated seedlings after the germination census was completed. Dark-flowering maternal plants yielded seeds and seedlings with higher biomass than light-flowering ones. Seeds from dark-flowering maternal plants also germinated faster than those from light-flowering maternal plants and seedlings had higher vegetative anthocyanin content. The hereditary nature of anthocyanin content thus suggests that higher anthocyanin levels (both floral and vegetative) are potentially linked to measures of fitness such as increased seed weight, germination rate, and seedling biomass. These data suggest that UV protection provided by anthocyanins potentially increases the realized fitness of maternal plants, thereby influencing life history.