The legacy of past human land use in current patterns of mammal distribution

Multiple environmental factors are known to shape species distributions at the global scale, including climate and topography, but understanding current extents of occurrence and biodiversity patterns requires considering anthropogenic factors as well. Numerous studies have explored the relationship between contemporary human activities and different biodiversity metrics, but the influence of past activities, such as land‐use, remains poorly understood despite being one of the oldest human impacts. Here we evaluate the role of past land‐use modifications in the current distribution and conservation status of mammals worldwide using spatial data characterizing human land use from ca BC 6000 to ca AD 2000. First, we applied a clustering method that revealed three generalized past human land‐use trajectories that represent low‐, recently‐ and steadily‐used areas widely represented across the globe. Second, we fitted boosted regression trees to predict total and threatened mammalian richness, globally and within trajectory‐clusters, testing the role of environmental factors and multiple human land‐use metrics reflecting: total used area at different time spans, rates of land‐use change, and the occurrence of remarkable land‐use shifts. Environmental factors were identified as the main correlates of current mammalian richness, but several proposed metrics of past land‐use were also relevant predictors. Overall, these results highlight the likely existence of a land‐use legacy in some regions of the world that has influenced the distribution of extant mammals, particularly of those currently classified as threatened. Even if we cannot change that legacy, our results show that we need to account for past human impacts to understand present biodiversity patterns and, arguably, to guide future actions.     

Predicting loss of evolutionary history: Where are we?

The Earth's evolutionary history is threatened by species loss in the current sixth mass extinction event in Earth's history. Such extinction events not only eliminate species but also their unique evolutionary histories. Here we review the expected loss of Earth's evolutionary history quantified by phylogenetic diversity (PD) and evolutionary distinctiveness (ED) at risk. Due to the general paucity of data, global evolutionary history losses have been predicted for only a few groups, such as mammals, birds, amphibians, plants, corals and fishes. Among these groups, there is now empirical support that extinction threats are clustered on the phylogeny; however this is not always a sufficient condition to cause higher loss of phylogenetic diversity in comparison to a scenario of random extinctions. Extinctions of the most evolutionarily distinct species and the shape of phylogenetic trees are additional factors that can elevate losses of evolutionary history. Consequently, impacts of species extinctions differ among groups and regions, and even if global losses are low within large groups, losses can be high among subgroups or within some regions. Further, we show that PD and ED are poorly protected by current conservation practices. While evolutionary history can be indirectly protected by current conservation schemes, optimizing its preservation requires integrating phylogenetic indices with those that capture rarity and extinction risk. Measures based on PD and ED could bring solutions to conservation issues, however they are still rarely used in practice, probably because the reasons to protect evolutionary history are not clear for practitioners or due to a lack of data. However, important advances have been made in the availability of phylogenetic trees and methods for their construction, as well as assessments of extinction risk. Some challenges remain, and looking forward, research should prioritize the assessment of expected PD and ED loss for more taxonomic groups and test the assumption that preserving ED and PD also protects rare species and ecosystem services. Such research will be useful to inform and guide the conservation of Earth's biodiversity and the services it provides.     

New insight into the colonization processes of common voles: inferences from molecular and fossil evidence

Elucidating the colonization processes associated with Quaternary climatic cycles is important in order to understand the distribution of biodiversity and the evolutionary potential of temperate plant and animal species. In Europe, general evolutionary scenarios have been defined from genetic evidence. Recently, these scenarios have been challenged with genetic as well as fossil data. The origins of the modern distributions of most temperate plant and animal species could predate the Last Glacial Maximum. The glacial survival of such populations may have occurred in either southern (Mediterranean regions) and/or northern (Carpathians) refugia. Here, a phylogeographic analysis of a widespread European small mammal (Microtus arvalis) is conducted with a multidisciplinary approach. Genetic, fossil and ecological traits are used to assess the evolutionary history of this vole. Regardless of whether the European distribution of the five previously identified evolutionary lineages is corroborated, this combined analysis brings to light several colonization processes of M. arvalis. The species' dispersal was relatively gradual with glacial survival in small favourable habitats in Western Europe (from Germany to Spain) while in the rest of Europe, because of periglacial conditions, dispersal was less regular with bottleneck events followed by postglacial expansions. Our study demonstrates that the evolutionary history of European temperate small mammals is indeed much more complex than previously suggested. Species can experience heterogeneous evolutionary histories over their geographic range. Multidisciplinary approaches should therefore be preferentially chosen in prospective studies, the better to understand the impact of climatic change on past and present biodiversity.     

Biodiversity in the context of ecosystem services: the applied need for systems approaches

Recent evidence strongly suggests that biodiversity loss and ecosystem degradation continue. How might a systems approach to ecology help us better understand and address these issues? Systems approaches play a very limited role in the science that underpins traditional biodiversity conservation, but could provide important insights into mechanisms that affect population growth. This potential is illustrated using data from a critically endangered bird population. Although species-specific insights have practical value, the main applied challenge for a systems approach is to help improve our understanding of the role of biodiversity in the context of ecosystem services (ES) and the associated values and benefits people derive from these services. This has profound implications for the way we conceptualize and address ecological problems. Instead of focusing directly on biodiversity, the important response variables become measures of values and benefits, ES or ecosystem processes. We then need to understand the sensitivity of these variables to biodiversity change relative to other abiotic or anthropogenic factors, which includes exploring the role of variability at different levels of biological organization. These issues are discussed using the recent UK National Ecosystems Assessment as a framework.     

生物多样性与生态系统服务情景模拟研究进展

生物多样性和生态系统服务情景模拟是指对未来生物多样性和生态系统服务变化轨迹的定量估计,二者相互关联并为长期、稳定的保护和恢复生态系统提供了重要科学依据。梳理生物多样性以及生态系统服务预测情景的核心观点,讨论基于生物多样性和生态系统服务情景模拟的保护决策支持途径,以期服务于我国生物多样性与生态系统服务预测研究的发展和深化。研究凝练结果如下:物种分布模型需要进行更规范的评价以明晰其对具体对象的适用性,生态系统预测模型亟待在关系结构的基础上嵌入更多的生态系统过程和社会经济过程,生态系统服务评估模型有必要强化对生物多样性、生态系统服务、人类福祉级联特征的刻画;全球气候变化驱动了未来区域生物多样性的大幅改变;土地利用则是陆地生态系统服务预测中的核心驱动变量。生态区划与区域尺度情景模拟、景观尺度下的生态安全格局构建、基于社会生态网络的社区适应三点重要展望方向将对基于情景模拟的我国生态系统保护决策提供重要的理论和实践支持。     

Unravelling the evolutionary history and future prospects of endemic species restricted to former glacial refugia

The contemporary distribution and genetic composition of biodiversity bear a signature of species’ evolutionary histories and the effects of past climatic oscillations. For many European species, the Mediterranean peninsulas of Iberia, Italy and the Balkans acted as glacial refugia and the source of range recolonization, and as a result, they contain disproportionately high levels of diversity. As these areas are particularly threatened by future climate change, it is important to understand how past climatic changes affected their biodiversity. We use an integrated approach, combining markers with different evolutionary rates and combining phylogenetic analysis with approximate Bayesian computation and species distribution modelling across temporal scales. We relate phylogeographic processes to patterns of genetic variation in Myotis escalerai, a bat species endemic to the Iberian Peninsula. We found a distinct population structure at the mitochondrial level with a strong geographic signature, indicating lineage divergence into separate glacial refugia within the Iberian refugium. However, microsatellite markers suggest higher levels of gene flow resulting in more limited structure at recent time frames. The evolutionary history of M. escalerai was shaped by the effects of climatic oscillations and changes in forest cover and composition, while its future is threatened by climatically induced range contractions and the role of ecological barriers due to competition interactions in restricting its distribution. This study warns that Mediterranean peninsulas, which provided refuge for European biodiversity during past glaciation events, may become a trap for limited dispersal and ecologically limited endemic species under future climate change, resulting in loss of entire lineages.     

The ghosts of mammals past: biological and geographical patterns of global mammalian extinction across the Holocene

Although the recent historical period is usually treated as a temporal base-line for understanding patterns of mammal extinction, mammalian biodiversity loss has also taken place throughout the Late Quaternary. We explore the spatial, taxonomic and phylogenetic patterns of 241 mammal species extinctions known to have occurred during the Holocene up to the present day. To assess whether our understanding of mammalian threat processes has been affected by excluding these taxa, we incorporate extinct species data into analyses of the impact of body mass on extinction risk. We find that Holocene extinctions have been phylogenetically and spatially concentrated in specific taxa and geographical regions, which are often not congruent with those disproportionately at risk today. Large-bodied mammals have also been more extinction-prone in most geographical regions across the Holocene. Our data support the extinction filter hypothesis, whereby regional faunas from which susceptible species have already become extinct now appear less threatened; they may also suggest that different processes are responsible for driving past and present extinctions. We also find overall incompleteness and inter-regional biases in extinction data from the recent fossil record. Although direct use of fossil data in future projections of extinction risk is therefore not straightforward, insights into extinction processes from the Holocene record are still useful in understanding mammalian threat.     

Implementing large-scale and long-term functional biodiversity research: The Biodiversity Exploratories

Functional biodiversity research explores drivers and functional consequences of biodiversity changes. Land use change is a major driver of changes of biodiversity and of biogeochemical and biological ecosystem processes and services. However, land use effects on genetic and species diversity are well documented only for a few taxa and trophic networks. We hardly know how different components of biodiversity and their responses to land use change are interrelated and very little about the simultaneous, and interacting, effects of land use on multiple ecosystem processes and services. Moreover, we do not know to what extent land use effects on ecosystem processes and services are mediated by biodiversity change. Thus, overall goals are on the one hand to understand the effects of land use on biodiversity, and on the other to understand the modifying role of biodiversity change for land-use effects on ecosystem processes, including biogeochemical cycles. To comprehensively address these important questions, we recently established a new large-scale and long-term project for functional biodiversity, the Biodiversity Exploratories (www.biodiversity-exploratories.de). They comprise a hierarchical set of standardized field plots in three different regions of Germany covering manifold management types and intensities in grasslands and forests. They serve as a joint research platform for currently 40 projects involving over 300 people studying various aspects of the relationships between land use, biodiversity and ecosystem processes through monitoring, comparative observation and experiments. We introduce guiding questions, concept and design of the Biodiversity Exploratories – including main aspects of selection and implementation of field plots and project structure – and we discuss the significance of this approach for further functional biodiversity research. This includes the crucial relevance of a common study design encompassing variation in both drivers and outcomes of biodiversity change and ecosystem processes, the interdisciplinary integration of biodiversity and ecosystem researchers, the training of a new generation of integrative biodiversity researchers, and the stimulation of functional biodiversity research in real landscape contexts, in Germany and elsewhere.     

Indicators of biodiversity and ecosystem services: a synthesis across ecosystems and spatial scales

According to the Millennium Ecosystem Assessment, common indicators are needed to monitor the loss of biodiversity and the implications for the sustainable provision of ecosystem services. However, a variety of indicators are already being used resulting in many, mostly incompatible, monitoring systems. In order to synthesise the different indicator approaches and to detect gaps in the development of common indicator systems, we examined 531 indicators that have been reported in 617 peer‐reviewed journal articles between 1997 and 2007. Special emphasis was placed on comparing indicators of biodiversity and ecosystem services across ecosystems (forests, grass‐ and shrublands, wetlands, rivers, lakes, soils and agro‐ecosystems) and spatial scales (from patch to global scale). The application of biological indicators was found most often focused on regional and finer spatial scales with few indicators applied across ecosystem types. Abiotic indicators, such as physico‐chemical parameters and measures of area and fragmentation, are most frequently used at broader (regional to continental) scales. Despite its multiple dimensions, biodiversity is usually equated with species richness only. The functional, structural and genetic components of biodiversity are poorly addressed despite their potential value across habitats and scales. Ecosystem service indicators are mostly used to estimate regulating and supporting services but generally differ between ecosystem types as they reflect ecosystem‐specific services. Despite great effort to develop indicator systems over the past decade, there is still a considerable gap in the widespread use of indicators for many of the multiple components of biodiversity and ecosystem services, and a need to develop common monitoring schemes within and across habitats. Filling these gaps is a prerequisite for linking biodiversity dynamics with ecosystem service delivery and to achieving the goals of global and sub‐global initiatives to halt the loss of biodiversity.     

Using historical ecology to understand patterns of biodiversity in fragmented agricultural landscapes

Aim To enhance current attempts to understand biodiversity patterns by using an historical ecology approach to highlight the over‐riding influence of land‐use history in creating past, current and future patterns of biodiversity in fragmented agricultural landscapes. Methods We develop an integrative conceptual framework for understanding spatial and temporal variations in landscape patterns in fragmented agricultural landscapes by presenting five postulates (hypotheses) which highlight the important role of historical, anthropogenic disturbance regimes. We then illustrate each of these postulates with examples drawn from fragmented woodlands in agricultural areas of south‐eastern Australia, and discuss these findings in an international context. Location examples are drawn from agricultural areas in south‐eastern Australia. Results We conclude that there is limited potential to refine our understanding of patterns of biodiversity in human‐modified landscapes based on traditional concepts of island biogeography, or simple assumptions of ongoing destruction and degradation. Instead, we propose that in agricultural landscapes that were largely cleared over a century ago: (1) present‐day remnant vegetation patterns are not accidental, but are logically arrayed due to historic land‐use decisions, (2) historic anthropogenic disturbances have a major influence on current ecosystem conditions and diversity patterns, and (3) the condition of remnant ecosystems is not necessarily deteriorating rapidly. Main conclusions An historical ecology approach can enhance our understanding of why different species and ecosystem states occur where they do, and can explain internal variations in ecological conditions within remnant ecosystems, too often casually attributed to the ‘mess of history’. This framework emphasizes temporal changes (both past and future) in biotic patterns and processes in fragmented agricultural landscapes. Integration of spatially and temporally explicit historical land‐use information into ecological studies can prove extremely useful to test hypotheses of the effects of changes in landscape processes, and to enhance future research, restoration and conservation management activities.     

Research agenda on biodiversity and ecosystem functions and services in European cities

Cities are challenging environments for human life, because of multiple environmental issues driven by urbanization. These can sometimes be mitigated through ecosystem services provided by different functions supported by biodiversity. However, biodiversity in cities is affected by numerous factors, namely habitat loss, degradation, and fragmentation, as well as pollution, altered climate, and new biotic challenges. To better understand the link between biodiversity and ecosystem functions and services, we need to improve our mechanistic knowledge of these relationships. Trait-based ecology is a promising approach for unravelling the causes and consequences of biodiversity filtering on ecosystem processes and underlying services, but large gaps remain unexplored.Here, we present a series of research directions that are aimed at extending the current knowledge of the relationship between trait-based biodiversity and ecosystem functions and services in cities. These directions are based on: (1) improving urban habitat mapping; (2) considering often neglected urban habitats and ecological niches; (3) integrating multiple urban gradients; (4) using trait-based approaches to improve our mechanistic understanding of the relationships between biodiversity and ecosystem functions and services; and (5) extending the involvement of citizens.Pursuing these research directions may support the sustainable management of urban ecosystems and the long-term provision of ecosystem services, ultimately enhancing the well-being of urban populations.     

生物多样性与生态系统服务——关系、权衡与管理

生物多样性和生态系统服务是人类生存和社会经济可持续发展的物质基础,应对生物多样性丧失和生态系统服务退化问题已经成为继气候变化之后的又一个全球性环境热点问题。生物多样性是生态系统生产力、稳定性、抵抗生物入侵以及养分动态的主要决定因素,生物多样性越高,生态系统功能性状的范围越广,生态系统服务质量就越高越稳定。目的是探讨生物多样性和生态系统服务之间的关系:(1)明确了生物多样性与生态系统过程、功能、服务之间的关系;(2)生物多样性在生态系统服务中的角色:生物多样性在不同的空间尺度通过各种形式的运行机制与生态系统服务产生联系,生物多样性是生态系统过程的调节者,是巩固生态系统服务的一个重要因素,生物多样性也是一种终极的生态系统服务,并在遗传和物种水平上直接贡献了其利益和价值;(3)生物多样性与生态系统服务权衡和协同关系的研究可以更好的帮助管理人员做出有利的决策和保护工作,也是制定规划和适应策略以减少生物多样性危机带来的不利影响的基础;(4)生物多样性与生态系统服务的关系在不同的时间和空间尺度上是不恒定的,有必要共同确定生态系统服务和生物多样性的空间格局,以有效和可持续的进行生态系统管理;(5)虽然生物多样性保护和生态系统管理还存在许多不确定性,但相关理论应该在管理、保护和恢复生态系统中发挥重要作用。研究提出了进一步研究的领域,以促进生物多样性保护和生态系统服务提供之间的协同作用。希望对相关领域的研究有所帮助。     

Millennial-scale faunal record reveals differential resilience of European large mammals to human impacts across the Holocene

The use of short-term indicators for understanding patterns and processes of biodiversity loss can mask longer-term faunal responses to human pressures. We use an extensive database of approximately 18 700 mammalian zooarchaeological records for the last 11 700 years across Europe to reconstruct spatio-temporal dynamics of Holocene range change for 15 large-bodied mammal species. European mammals experienced protracted, non-congruent range losses, with significant declines starting in some species approximately 3000 years ago and continuing to the present, and with the timing, duration and magnitude of declines varying individually between species. Some European mammals became globally extinct during the Holocene, whereas others experienced limited or no significant range change. These findings demonstrate the relatively early onset of prehistoric human impacts on postglacial biodiversity, and mirror species-specific patterns of mammalian extinction during the Late Pleistocene. Herbivores experienced significantly greater declines than carnivores, revealing an important historical extinction filter that informs our understanding of relative resilience and vulnerability to human pressures for different taxa. We highlight the importance of large-scale, long-term datasets for understanding complex protracted extinction processes, although the dynamic pattern of progressive faunal depletion of European mammal assemblages across the Holocene challenges easy identification of ‘static’ past baselines to inform current-day environmental management and restoration.     

Global change and plant-ecosystem functioning in freshwaters

Freshwater ecosystems are of worldwide importance for maintaining biodiversity and sustaining the provision of a myriad of ecosystem services to modern societies. Plants, one of the most important components of these ecosystems, are key to water nutrient removal, carbon storage, and food provision. Understanding how the functional connection between freshwater plants and ecosystems is affected by global change will be key to our ability to predict future changes in freshwater systems. Here, we synthesize global plant responses, adaptations, and feedbacks to present-day and future freshwater environments through trait-based approaches, from single individuals to entire communities. We outline the transdisciplinary knowledge benchmarks needed to further understand freshwater plant biodiversity and the fundamental services they provide.     

Rapid shifts in the chemical composition of aspen forests: an introduced herbivore as an agent of natural selection

The global ecological impacts of introduced and exotic species can be dramatic, leading to losses in biodiversity and ecosystem “meltdown”, however, the evolutionary impacts of introduced species are much less understood. Further, very few studies have examined whether mammalian herbivores can act as agents of natural selection for plant traits. We examined the hypothesis that variation in aspen phytochemistry resulted in selective herbivory by Cervus elaphus (elk), an introduced mammalian herbivore. With the experimental removal of a large elk exclosure, elk selectively eliminated 60% of an aspen population previously protected from herbivory resulting in a dramatic shift in the phytochemical composition of the aspen forest. Selection gradients (β) varied from 0.52 to 0.66, well above average relative to other studies of selection. These results indicate that introduced herbivores can have rapid evolutionary consequences even on long lived native species. Because there are fundamental links between phytochemistry, biodiversity and ecosystem processes, the effects of an introduced herbivore are likely to have cascading impacts on the services ecosystems provide.     

How global extinctions impact regional biodiversity in mammals

Phylogenetic diversity (PD) represents the evolutionary history of a species assemblage and is a valuable measure of biodiversity because it captures not only species richness but potentially also genetic and functional diversity. Preserving PD could be critical for maintaining the functional integrity of the world's ecosystems, and species extinction will have a large impact on ecosystems in areas where the ecosystem cost per species extinction is high. Here, we show that impacts from global extinctions are linked to spatial location. Using a phylogeny of all mammals, we compare regional losses of PD against a model of random extinction. At regional scales, losses differ dramatically: several biodiversity hotspots in southern Asia and Amazonia will lose an unexpectedly large proportion of PD. Global analyses may therefore underestimate the impacts of extinction on ecosystem processes and function because they occur at finer spatial scales within the context of natural biogeography.     

Vegetation-type conversion of evergreen chaparral shrublands to savannahs dominated by exotic annual herbs: causes and consequences for ecosystem function

Woody, evergreen shrublands are the archetypal community in mediterranean-type ecosystems, and these communities are profoundly changed when they undergo vegetation-type conversion (VTC) to become annual, herb-dominated communities. Recently, VTC has occurred throughout southern California chaparral shrublands, likely with changes in important ecosystem functions. The mechanisms that lead to VTC and subsequent changes to ecosystem processes are important to understand as they have regional and global implications for ecosystem services, climate change, land management, and policy. The main drivers of VTC are altered fire regimes, aridity, and anthropogenic disturbance. Some changes to ecosystem function are certain to occur with VTC, but their magnitudes are unclear, whereas other changes are unpredictable. I present two hypotheses: (1) VTC leads to warming that creates a positive feedback promoting additional VTC, and (2) altered nitrogen dynamics create negative feedbacks and promote an alternative stable state in which communities are dominated by herbs. The patterns described for California are mostly relevant to the other mediterranean-type shrublands of the globe, which are biodiversity hotspots and threatened by VTC. This review examines the extent and causes of VTC, ecosystem effects, and future research priorities.     

Ecosystem services and biodiversity in developing countries

The concept of ecosystem services has become important for our understanding of the role of nature for maintaining human livelihoods. But is biodiversity essential to maintain ecosystem services? Many studies suggest that higher biodiversity allows a higher level of ecosystem services, but others argue that there is little hard evidence, especially from tropical environments, to document the necessity of high biodiversity for provision of most ecosystem services. Thus, effective valuation of biodiversity for ecosystem services and long-term studies and monitoring are needed to fully understand the complex biodiversity-ecosystem service interface. This introduction briefly reviews some of the main arguments in this debate and provides an overview of the other five special issue papers. Exploring biodiversity and ecosystem interactions in the context of the provision of ecosystem services, these papers address population and biodiversity coexistence, the importance of dung beetles in agricultural landscapes, the knowledge and use of palms by local communities, bioprospecting for drugs and how biodiversity conservation may have added benefits in terms of improved watershed functions and health.     

亚高山森林生态系统过程研究进展

亚高山森林是以冷、云杉属为建群种或优势种的暗针叶林为主体的森林植被。亚高山森林在庇护邻近脆弱生态系统、保育生物多样性、涵养水源、碳吸存和指示全球气候变化等方面具有十分重要且不可替代的作用和地位,其多样化的植被和土壤组合为研究生态系统过程提供了天然的实验室。亚高山森林的群落演替与更新、生物多样性保育、水文生态过程、生物元素的生物地球化学循环以及亚高山森林生态过程对气候变化的响应等研究已取得了明显的进展。但有关全球变化条件下的亚高山森林土壤生物多样性和冬季生态学过程等研究明显不足。全球气候变化背景下的冬季生态学过程、极端灾害事件对亚高山森林生态系统过程的影响、亚高山森林生物多样性的保育机制、亚高山森林土壤生物多样性与生态系统过程的耦合机制等可能是未来研究的前沿科学问题。     

Phylogenetic diversity does not capture body size variation at risk in the world's mammals

Mammals contribute to important ecosystem processes and services, but many mammalian species are threatened with extinction. We compare how global patterns in three measures of mammalian diversity—species richness, phylogenetic diversity (PD) and body mass variance (BMV)—would change if all currently threatened species were lost. Given that many facets of species'' ecology and life history scale predictably with body mass, the BMV in a region roughly reflects the diversity of species'' roles within ecosystems and so is a simple proxy for functional diversity (FD). PD is also often considered to be a proxy for FD, but our results suggest that BMV losses within ecoregions would be much more severe than losses of PD or species richness, and that its congruence with the latter two measures is low. Because of the disproportionate loss of large mammals, 65 per cent of ecoregions would lose significantly more BMV than under random extinction, while only 11 per cent would lose significantly more PD. Ecosystem consequences of these selective losses may be profound, especially throughout the tropics, but are not captured by PD. This low surrogacy stresses a need for conservation prioritization based on threatened trait diversity, and for conservation efforts to take an ecosystem perspective.