Seasonal Bacterial Production in a Dimictic Lake as Measured by Increases in Cell Numbers and Thymidine Incorporation

Rates of primary and bacterial production in Little Crooked Lake were calculated from the rates of incorporation of H¹⁴CO₃⁻ and [methyl-³H]thymidine, respectively. Growth rates of bacteria in diluted natural samples were determined for epilimnetic and metalimnetic bacterial populations during the summers of 1982 and 1983. Exponential growth was observed in these diluted samples, with increases in cell numbers of 30 to 250%. No lag was observed in bacterial growth in 14 of 16 experiments. Correlation of bacterial growth rates to corresponding rates of thymidine incorporation by natural samples produced a conversion factor of 2.2 × 10¹⁸ cells produced per mole of thymidine incorporated. The mass of the average bacterial cell in the lake was 1.40 × 10⁻¹⁴ ± 0.05 × 10⁻¹⁴ g of C cell⁻¹. Doubling times of natural bacteria calculated from thymidine incorporation rates and in situ cell numbers ranged from 0.35 to 12.00 days (median, 1.50 days). Bacterial production amounted to 66.7 g of C m⁻² from April through September, accounting for 29.4% of total (primary plus bacterial) production during this period. The vertical and seasonal distribution of bacterial production in Little Crooked Lake was strongly influenced by the distribution of primary production. From April through September 1983, the depth of maximum bacterial production rates in the water column was related to the depth of high rates of primary production. On a seasonal basis, primary production increased steadily from May through September, and bacterial production increased from May through August and then decreased in September.     

Seasonal Variation in Aboveground Production and Radiation-use Efficiency of Temperate rangelands Estimated through Remote Sensing

Aboveground net primary production (ANPP) of grasslands varies spatially and temporally. Spectral information provided by remote sensors is a promising new tool that may be able to estimate ANPP in real time and at low cost. The objectives of this study were (a) to evaluate at a seasonal scale the relationship between ANPP and the normalized difference vegetation index (NDVI), (b) to estimate seasonal variations in the coefficient of conversion of absorbed radiation into aboveground biomass (ε_a), and (c) to identify the environmental controls on such temporal changes. We used biomass-based field determinations of ANPP for two grassland sites in the Flooding Pampa, Argentina, and related them with NDVI data derived from the NOAA Advanced Very High Resolution Radiometer (AVHRR) satellites using three different models. Results were compared with data obtained from the new Moderate Resolution Imaging Spectroradiometer (MODIS) sensor at an additional site. The first model was based solely on NDVI; the second was based on the amount of photosynthetically active radiation absorbed by the green vegetation (APAR_g), which was derived from NDVI and incoming photosynthetically active radiation (PAR); the third was based on APAR_g and ε_a, which was in turn estimated from climatic variables. NDVI explained between 63 and 93% of ANPP variation, depending on the site considered. Estimates of ANPP were not improved by considering the variation in incoming PAR. At both sites, ε_a varied seasonally (from 0.2 to 1.2 g DM/MJ) and was significantly associated with combinations of precipitation and temperature. Combining ε_a variations with APAR_g increased our ability to account for seasonal ANPP variations at both sites. Our results indicate that NDVI produces good, direct estimates of ANPP only if NDVI, PAR, and ε_a are correlated throughout the seasons. Thus, in most cases, seasonal variations of ε_a associated with temperature and precipitation must be taken into account to generate seasonal ANPP estimates with acceptable accuracy.     

Responses of Plant Community Composition and Biomass Production to Warming and Nitrogen Deposition in a Temperate Meadow Ecosystem

Climate change has profound influences on plant community composition and ecosystem functions. However, its effects on plant community composition and biomass production are not well understood. A four-year field experiment was conducted to examine the effects of warming, nitrogen (N) addition, and their interactions on plant community composition and biomass production in a temperate meadow ecosystem in northeast China. Experimental warming had no significant effect on plant species richness, evenness, and diversity, while N addition highly reduced the species richness and diversity. Warming tended to reduce the importance value of graminoid species but increased the value of forbs, while N addition had the opposite effect. Warming tended to increase the belowground biomass, but had an opposite tendency to decrease the aboveground biomass. The influences of warming on aboveground production were dependent upon precipitation. Experimental warming had little effect on aboveground biomass in the years with higher precipitation, but significantly suppressed aboveground biomass in dry years. Our results suggest that warming had indirect effects on plant production via its effect on the water availability. Nitrogen addition significantly increased above- and below-ground production, suggesting that N is one of the most important limiting factors determining plant productivity in the studied meadow steppe. Significant interactive effects of warming plus N addition on belowground biomass were also detected. Our observations revealed that environmental changes (warming and N deposition) play significant roles in regulating plant community composition and biomass production in temperate meadow steppe ecosystem in northeast China.     

Bacterial Succession in Glacial Forefield Soils Characterized by Community Structure,Activity and Opportunistic Growth Dynamics

The succession of bacterial communities inhabiting the forefield of the Dammaglacier (Switzerland) was investigated in soils ranging in successional age from 0 to 100 years since deglaciation. Overall activity per bacterial cell was estimated by the amount of fluorescein diacetate (FDA) hydrolyzed per DAPI-stained cell, and an index of "opportunism" was determined from the ratio of culturable to total cells (C:T ratio). Ribosomal intergenic spacer analysis (RISA) was used to estimate the richness of dominant phylotypes and to construct rank-abundance plots of the dominant populations. We observed a biphasic trend in specific cellular activity, which exhibited minima in the 0- and 100-year-old soils while a maximum activity per cell was reached in the 70-y soil. On average, the C:T ratio showed the same trend as the specific activity, although we observed some differences between the two sampling transects. RISA revealed a decrease in dominant phylotype richness as successional age increased, and rank-abundance plots indicated that the evenness of the dominant bacterial phylotypes significantly decreased with successional age. The combination of specific cellular activity and C:T ratio results suggested the presence of an r-K continuum of bacteria while RISA showed that richness and evenness of dominant phylotypes decreased with successional age. We conclude that bacterial succession in the glacier forefield was a dynamic process with adaptation to the differing stages of succession occurring on both the individual and community levels.     

Primary and Bacterial Secondary Production in a Southwestern Reservoir

Rates of primary and bacterial secondary production in Lake Arlington, Texas, were determined. The lake is a warm (annual temperature range, 7 to 32°C), shallow, monomictic reservoir with limited macrophyte development in the littoral zone. Samples were collected from six depths within the photic zone from a site located over the deepest portion of the lake. Primary production and bacterial production were calculated from NaH¹⁴CO₃ and [methyl-³H]thymidine incorporation, respectively. Peak instantaneous production ranged between 14.8 and 220.5 μg of C liter⁻¹ h⁻¹. There were two distinct periods of high rates of production. From May through July, production near the metalimnion exceeded 100 μg of C liter⁻¹ h⁻¹. During holomixis, production throughout the water column was in excess of 100 μg of C liter⁻¹ h⁻¹ and above 150 μg of C liter⁻¹ h⁻¹ near the surface. Annual areal primary production was 588 g of C m⁻². Bacterial production was markedly seasonal. Growth rates during late fall through spring were typically around 0.002 h⁻¹, and production rates were typically 5 μg of C liter⁻¹ h⁻¹. Growth rates were higher during warmer parts of the year and reached 0.03 h⁻¹ by August. The maximum instantaneous rate of bacterial production was approximately 45 μg of C liter⁻¹ h⁻¹. Annual areal bacterial production was 125 g of C m⁻². Temporal and spatial distributions of bacterial numbers and activities coincided with temporal and spatial distributions of primary production. Areal primary and bacterial secondary production were highly correlated (r = 0.77, n = 15, P < 0.002).     

The Seasonal Pattern of Growth and Production of a Temperate C4 Species, Cyperus longus

Growth and production of the temperate C₄ species Cyperus longusL. was measured throughout a growing season in an establishedplot in Eastern Ireland. The maximum standing live biomass reachedwas 2·5 kg m^–2. Estimates of unit leaf rate (ULR)and leaf area index (LAI) were made. The product of these quantitiesgave the crop growth rate (CGR) each week. C. longus was foundto maintain high values of LAI throughout the summer, with amaximum value of about 13 in early August. CGR reached a peakin early July. The optimum LAI was 11·6. Temperaturesat five levels in the plant canopy, and the amount of solarradiation intercepted by the canopy were measured continuouslyduring the summer. The mean daily rate of leaf extension waspositively correlated with the mean daily air temperature abovethe canopy but the temperature coefficient of the process waslow compared with other temperate species. The percentage ofsolar radiation intercepted by the canopy increased rapidlyin early summer, and canopy closure had occurred by mid-June.Rates of net photosynthesis were measured on young and old leafmaterial in situ at the time of peak LAI. In young leaves themaximum rates of net photosynthesis were higher than those publishedfor a range of temperate C₃ species, but similar to those foundin another temperate C₄ species, Spartina townsendii. Key words: C₄ photosynthesis, leaf growth, productivity     

南亚热带河流型水库浮游植物群落的季节变化：以广东飞来峡水库为例

于2003年4-12月调查了广东省飞来峡水库的水文、营养盐分布状况和浮游植物种类与数量,分析了浮游植物群落的种类及数量组成与动态特征,探讨了其动态变化的驱动因子。结果表明,飞来峡水库是一个典型的河流型大型水库,水力滞留时间短,年均值低于15 d;降雨量主要集中于夏季,最短水力滞留时间只有8 d。水温全年没有分层现象。丰水期营养盐和叶绿素a高于枯水期。浮游植物生物量低,细胞密度在21.7×103-808×103 cells L-1之间变化,没有超过106 cells L-1,叶绿素a的平均浓度为2μg L-1。浮游植物种类较多,4次采样共检到140种。种类组成上有较大变化,4月份有83种,以硅藻为主;7月和9月超过90种,以绿藻为主;12月有51种,蓝藻、绿藻和硅藻种类数量相当。优势种类的构成上与温带水库不同,硅藻仅在低水温时期为优势类群,而在丰水期则以蓝藻、绿藻和硅藻共同占优势。硅藻的主要优势种是变异直链藻(Melosira varians)、梅尼小环藻(Cyclotella menighiniana)和针杆藻(Synedra spp.)。绿藻种类组成季节变化较大,没有明显的优势种类。丰度相对较高的有美丽胶网藻(Dictyosphaerium pulchellum)、集星藻(Actinastrum hantzschii)和空球藻(Eudorina elegans)等。蓝藻的优势种以粘球藻(Gloeocapsa sp.)、优美平列藻(Merismopedia elegans)和伪鱼腥藻(Pseudoanabaena sp.)为主。与绿藻不同的是蓝藻的优势种在全年均可出现。隐藻只在水力滞留时间较长、温度较低的12月份占优势,主要优势种为啮蚀隐藻(Cryptomonas erosa)、尖尾蓝隐藻(Chroomonas acuta)。     

Seasonal Changes of Bacterioplankton in a Reservoir Related to Algae. I. Numbers and Biomass

A reservoir for drinking water supply was studied at 10 day intervals for one season. Changes in bacterial microscopic counts and chlorophyll and algal biomass showed a similar pattern. Bacterial peaks usually lagged slightly behind the algal maxima. Average volumes of bacterial cells, corrected for shrinkage, were mostly lower than 0.2 μm³. The average concentration of bacterial C in water was estimated to be 18 μg μg 1 ⁻¹ (from a volume biomass of 0.09 mm³ per litre). Several years' fluctuations in bacterial numbers were compared with hydrological data and phyto- and zooplankton changes.     

A Doubling of Microphytobenthos Biomass Coincides with a Tenfold Increase in Denitrifier and Total Bacterial Abundances in Intertidal Sediments of a Temperate Estuary

Surface sediments are important systems for the removal of anthropogenically derived inorganic nitrogen in estuaries. They are often characterized by the presence of a microphytobenthos (MPB) biofilm, which can impact bacterial communities in underlying sediments for example by secretion of extracellular polymeric substances (EPS) and competition for nutrients (including nitrogen). Pyrosequencing and qPCR was performed on two intertidal surface sediments of the Westerschelde estuary characterized by a two-fold difference in MPB biomass but no difference in MPB composition. Doubling of MPB biomass was accompanied by a disproportionately (ten-fold) increase in total bacterial abundances while, unexpectedly, no difference in general community structure was observed, despite significantly lower bacterial richness and distinct community membership, mostly for non-abundant taxa. Denitrifier abundances corresponded likewise while community structure, both for nirS and nirK denitrifiers, remained unchanged, suggesting that competition with diatoms for nitrate is negligible at concentrations in the investigated sediments (appr. 1 mg/l NO₃^-). This study indicates that MPB biomass increase has a general, significantly positive effect on total bacterial and denitrifier abundances, with stimulation or inhibition of specific bacterial groups that however do not result in a re-structured community.     

Seasonal Variation in the Structure of a Marine Benthic Microbial Community

Abstract The patterns of seasonal variation in the structure of a marine benthic microbial community were examined using phospholipid fatty acid analysis (PLFA). Principal component analysis of PLFA profiles indicated a strong seasonal pattern dominated the variance within the data set. Three functional groups of microorganisms (phototrophic microeukaryotes, and two groups of anaerobic bacteria) were disproportionately abundant in the communities that mapped to either extreme of the first principle component. Phototrophic microeukaryotes were most abundant and exhibited the greatest relative abundance during periods of cold water. In contrast, the two functional groups of anaerobic bacteria showed the greatest relative abundance during times of warm water. Differential responses by these groups, and macrofaunal deposit feeders, to light intensity and water temperature were offered as the proximal causes of the observed patterns. Received: 28 April 1997; Accepted: 10 September 1997     

Spatial and Seasonal Variation in a Reservoir Sedimentary Microbial Community as Determined by Phospholipid Analysis

Sediment samples were collected monthly from Acton Lake, a eutrophic reservoir located in an agricultural region of southwestern Ohio, from three stations (River, Middle, and Dam) during the period May 1995 through January 1997. Sedimentary microbial biomass and community structures from these stations were studied using phospholipid analysis. At the River and Middle stations, the water column remained aerobic throughout the year, whereas the water overlying the Dam station sediments became anaerobic during summer stratification. Sedimentary microbial biomass at the River and Middle stations, as measured by the phospholipid phosphate (PLP) method, ranged from 225 to 450 nmol PLP g?1 d.w. (dry weight). Sedimentary microbial biomass at the Dam station was typically greater and ranged from 500 to 1,500 nmol PLP g?1 d.w. Principal component analysis of phospholipid fatty acid (PLFA) profiles indicated that the sedimentary microbial communities at all three stations displayed seasonal patterns of change. Among these patterns of change was a shift from aerobic microorganisms during times of cold water to anaerobic microorganisms during times of warm water. The Dam station differed from the River and Middle stations in that sediments from this station had disproportionately more polyenoic fatty acids, whereas sediments from the River and Middle stations had disproportionately more bacterial fatty acids. These data suggest that the Dam station may be a depositional zone for microeukaryotic phytoplankton produced in the overlying water column. These findings have implications for the understanding of carbon flux in reservoirs and preservation of organic matter in aquatic systems.     

Seasonal Variation in Seed Dispersal by Tamarins Alters Seed Rain in a Secondary Rain Forest

Reduced dispersal of large seeds into degraded areas is one of the major factors limiting rain forest regeneration, as many seed dispersers capable of transporting large seeds avoid these sites with a limited forest cover. However, the small size of tamarins allows them to use small trees, and hence to disperse seeds into young secondary forests. Seasonal variations in diet and home range use might modify their contribution to forest regeneration through an impact on the seed rain. For a 2-yr period, we followed a mixed-species group of tamarins in Peru to determine how their role as seed dispersers in a 9-yr-old secondary-growth forest varied across seasons. These tamarins dispersed small to large seeds of 166 tree species, 63 of which were into a degraded area. Tamarins’ efficiency in dispersing seeds from primary to secondary forest varied across seasons. During the late wet season, high dietary diversity and long forays in secondary forest allowed them to disperse large seeds involved in later stages of regeneration. This occurred precisely when tamarins spent a more equal amount of time eating a high diversity of fruit species in primary forest and pioneer species in secondary forest. We hypothesized that well-balanced fruit availability induced the movement of seed dispersers between these 2 habitats. The noteworthy number of large-seeded plant species dispersed by such small primates suggests that tamarins play an important, but previously neglected, role in the regeneration and maintenance of forest structure.     

Patterns in Species Persistence and Biomass Production in Soil Microcosms Recovering from a Disturbance Reject a Neutral Hypothesis for Bacterial Community Assembly

The neutral theory of biodiversity has emerged as a major null hypothesis in community ecology. The neutral theory may sufficiently well explain the structuring of microbial communities as the extremely high microbial diversity has led to an expectation of high ecological equivalence among species. To address this possibility, we worked with microcosms of two soils; the microcosms were either exposed, or not, to a dilution disturbance which reduces community sizes and removes some very rare species. After incubation for recovery, changes in bacterial species composition in microcosms compared with the source soils were assessed by pyrosequencing of bacterial 16S rRNA genes. Our assays could detect species with a proportional abundance ≥ 0.0001 in each community, and changes in the abundances of these species should have occurred during the recovery growth, but not be caused by the disturbance per se. The undisturbed microcosms showed slight changes in bacterial species diversity and composition, with a small number of initially low-abundance species going extinct. In microcosms recovering from the disturbance, however, species diversity decreased dramatically (by > 50%); and in most cases there was not a positive relationship between species initial abundance and their chance of persistence. Furthermore, a positive relationship between species richness and community biomass was observed in microcosms of one soil, but not in those of the other soil. The results are not consistent with a neutral hypothesis that predicts a positive abundance-persistence relationship and a null effect of diversity on ecosystem functioning. Adaptation mechanisms, in particular those associated with species interactions including facilitation and predation, may provide better explanations.     

Spatial Variation in the Bacterial and Denitrifying Bacterial Community in a Biofilter Treating Subsurface Agricultural Drainage

Denitrifying biofilters can remove agricultural nitrates from subsurface drainage, reducing nitrate pollution that contributes to coastal hypoxic zones. The performance and reliability of natural and engineered systems dependent upon microbially mediated processes, such as the denitrifying biofilters, can be affected by the spatial structure of their microbial communities. Furthermore, our understanding of the relationship between microbial community composition and function is influenced by the spatial distribution of samples. In this study we characterized the spatial structure of bacterial communities in a denitrifying biofilter in central Illinois. Bacterial communities were assessed using automated ribosomal intergenic spacer analysis for bacteria and terminal restriction fragment length polymorphism of nosZ for denitrifying bacteria. Non-metric multidimensional scaling and analysis of similarity (ANOSIM) analyses indicated that bacteria showed statistically significant spatial structure by depth and transect, while denitrifying bacteria did not exhibit significant spatial structure. For determination of spatial patterns, we developed a package of automated functions for the R statistical environment that allows directional analysis of microbial community composition data using either ANOSIM or Mantel statistics. Applying this package to the biofilter data, the flow path correlation range for the bacterial community was 6.4 m at the shallower, periodically inundated depth and 10.7 m at the deeper, continually submerged depth. These spatial structures suggest a strong influence of hydrology on the microbial community composition in these denitrifying biofilters. Understanding such spatial structure can also guide optimal sample collection strategies for microbial community analyses.     

Demographic Drivers of Aboveground Biomass Dynamics During Secondary Succession in Neotropical Dry and Wet Forests

The magnitude of the carbon sink in second-growth forests is expected to vary with successional biomass dynamics resulting from tree growth, recruitment, and mortality, and with the effects of climate on these dynamics. We compare aboveground biomass dynamics of dry and wet Neotropical forests, based on monitoring data gathered over 3–16 years in forests covering the first 25 years of succession. We estimated standing biomass, annual biomass change, and contributions of tree growth, recruitment, and mortality. We also evaluated tree species’ contributions to biomass dynamics. Absolute rates of biomass change were lower in dry forests, 2.3 and 1.9 Mg ha^?1 y^?1, after 5–15 and 15–25 years after abandonment, respectively, than in wet forests, with 4.7 and 6.1 Mg ha^?1 y^?1, in the same age classes. Biomass change was largely driven by tree growth, accounting for at least 48% of biomass change across forest types and age classes. Mortality also contributed strongly to biomass change in wet forests of 5–15 years, whereas its contribution became important later in succession in dry forests. Biomass dynamics tended to be dominated by fewer species in early-successional dry than wet forests, but dominance was strong in both forest types. Overall, our results indicate that biomass dynamics during succession are faster in Neotropical wet than dry forests, with high tree mortality earlier in succession in the wet forests. Long-term monitoring of second-growth tropical forest plots is crucial for improving estimates of annual biomass change, and for enhancing understanding of the underlying mechanisms and demographic drivers.     

Annual and Seasonal Variation in the Phyllosphere Bacterial Community Associated with Leaves of the Southern Magnolia (Magnolia grandiflora)

The phyllosphere contains a diverse bacterial community that can be intimately associated with the host plant; however, few studies have examined how the phyllosphere community changes over time. We sampled replicate leaves from a single magnolia (Magnolia grandiflora) tree in the winter of three consecutive years (2007?C2009) as well as during four seasons of 1?year (2008) and used molecular techniques to examine seasonal and year-to-year variation in bacterial community structure. Multivariate analysis of denaturing gradient gel electrophoresis profiles of 16S rRNA gene fragments revealed minimal leaf to leaf variation and much greater temporal changes, with the summer (August 2008) leaf community being most distinct from the other seasons. This was confirmed by sequencing and analysis of 16S rRNA gene clone libraries generated for each sample date. All phyllosphere communities were dominated by Alphaproteobacteria, with a reduction in the representation of certain Beijerinckiaceae during the summer and a concurrent increase in the Methylobacteriaceae being the most significant seasonal change. Other important components of the magnolia phyllosphere included members of the Bacteroidetes, Acidobacteria, and Actinobacteria, with the latter two lineages also showing differences in their representation in samples collected at different times. While the leaf-associated bacterial community sampled at the same time of year in three separate years showed some similarities, generally these communities were distinct, suggesting that while there are seasonal patterns, these may not be predictable from year to year. These results suggest that seasonal differences do occur in phyllosphere communities and that broad-leafed evergreen trees such as M. grandiflora may present interesting systems to study these changes in the context of changing environmental conditions.     

The Structure of a Macroinvertebrate Community in a Northern German Lake Outlet (Lake Belau,Schleswig-Holstein) with Special Emphasis on Abundance,Biomass and Secondary Production

The structure of macroinvertebrate communities was studied at I I sampling sites of the outlet of Lake Belau in the lowlands of northern Germany. To describe the structures of macrobenthic animal communities three different units were examined: abundance, biomass, and secondary production. 112 taxa were collected from the entire stream. The numbers of species ranged from 31 (fine sand) to 70 (submerged macrophytes). For the stream, average macroinvertebrate density was 18.400 ind. M⁻¹. Density was highest at the macrophytes amounting to 35,630 individuals per m², and lowest in the pure sand with only 3,900 ind. M⁻². Average biomass (dry mass) was 194 g DM m⁻² varying from 9.8 (peat) to 381 g DM m⁻² (gravel with mollusk shells near the upstream lake). For the stream, average annual production was 129 g DM m⁻² varying from 15 (peat) to 286 g DM m⁻² (macrophytes). The highest values for each unit were found in stream sections with gravel and submerged macrophytes. Lower values occured in sections that contained peat and sand. Usually, a single structure of the macroinvertebrate community was dominated by less than ten taxa, which varied at each sampling site depending on the units observed.