Phylogeny of Oestridae (Insecta: Diptera)

The phylogeny of Oestridae was analysed at the generic level using 118 characters from all developmental stages and including morphology, ontogeny, physiology and behaviour. Four major clades were given subfamilial rank with the phylogenetic relationship (Cuterebrinae (Gasterophilinae (Hypodermatinae + Oestrinae))). The subdermal parasites of the African elephant, Neocuterebra squamosa Grünberg and Ruttenia loxodontis Rodhain, had their most probable affiliation subordinate to the clade of stomach parasites, although their exact position needs further investigation. Genus Ochotonia Grunin, which is known from a single third‐instar larva only, was the probable sister group of all other Hypodermatinae. Twenty‐five oestrid genera were recognised as valid and those containing more than one species were defined through lists of autapomorphies. Cuterebra Clark was proposed as a senior synonym of Alouattamyia Townsend, Andinocuterebra Guimarães, Pseudogametes Bischof and Rogenhofera Brauer. The clade of hypodermatine ungulate parasites (Hypoderma Latreille +Pallasiomyia Rubtzov +Pavlovskiata Grunin +Przhevalskiana Grunin +Strobiloestrus Brauer) remained largely unresolved, and genus Przhevalskiana emerged without defining characters.     

Origins of the cultivation oflathyrus sativus andL. cicera (fabaceae)

Most of the early and rich archaeobotanical finds ofLathyrus sect.Cicercula, particularly those of the most ancient periods, came from the Balkan peninsula. It has been found that cultivation ofL. sativus began there in the early Neolithic period, around 6000 b.c.e., as a result of the expansion of Near Eastern agriculture of annuals into the region. This, in turn, encouraged development of a greater variety of legumes by the domestication of an additional native species. Similarly, it is suggested that domestication ofL. cicera in southern France and the Iberian peninsula occurred only after the introduction of agriculture into the area. Cultivation of these two closely related species in adjacent regions led to the raising of a mixed crop in many ancient fields. Lathyrus sativus may perhaps be the first crop domesticated in Europe.     

Phylogeny of Ptychopteroidea (Insecta: Diptera)

A phylogenetic tree is proposed for the superfamily Ptychopteroidea, reconstructed taking into account both extinct and extant taxa and based mainly on characters of wing venation.     

Phylogeny of the Neuropterida (Insecta: Holometabola)

The Neuropterida, with about 6500 known species — living fossils in a way — at the base of the Holometabola (as a sister group of the Coleoptera), comprise Raphidioptera (about 210 species, two families), Megaloptera (about 300 species, two families) and Neuroptera (6000 species, 17 families). Megaloptera + Neuroptera is argued vs. the traditional Raphidioptera + Megaloptera. Raphidioptera are undisputedly monophyletic. Monophyly of Megaloptera is the operational hypothesis, although occasionally questioned. Sucking tubes of the larvae are the most spectacular autapomorphy of Neuroptera. The construction of larval head capsules indicates three evolutionary lines: Nevrorthiformia, and Myrmeleontiformia + Hemerobiiformia. Traditional Myrmeleontiformia is Psychopsidae + (Nemopteridae + (Nymphidae + (Myrmeleontidae + Ascalaphidae))), the present approach is (Psychopsidae + Nemopteridae) + all other Myrmeleontiformia. Hemerobiiformia are based on the ‘maxillary head’ concept. The ithonid clade Ithonidae/Rapismatidae + Polystoechothidae and the dilarid clade Dilaridae + (Mantispidae + (Rhachiberothidae + Berothidae)) are based on robust criteria. Other relationships remain unclear: Hemerobiidae + Chrysopidae (on similarity) and the ‘early offshoot’ concept of coniopterygidae (on autapomorphies) should not be perpetuated. Chysopidae + Osmylidae and (Hemerobiidae + (Coniopterygidae + Sisyridae)) + dilarid clade are discussed. Aquatic larvae, regarded as independent apomorphies of megaloptera and neuropteran Nevrorthidae and Sisyridae for a long time, are re‐interpreted as a synapomorphy of Megaloptera + Neuroptera and thus plesiomorphic within these groups. Terrestrial larvae (with cryptonephry to solve osmotic problems) are consequently apomorphic. Aquatic Sisyridae with cryptonephry of a single malpighian tubule, is conflicting, but larvae may have become secondarily aquatic, after a terrestrial intermezzo.     

Molecular Phylogeny of Deer (Cervidae: Artiodactyla)

Sequences of mitochondrial genes 12S and 16S rRNA (2445 bp) and the region of the nuclear betaspectrin gene (828 bp) were analyzed in members of the family Cervidae and in some other artiodactyls. Several molecular synapomorphies characteristic both of Cervidae and musk deer have been found. According to our data, Cervidae is a sister clade to Bovidae, which are very close to Moschidae. The family Giraffidae is exterior to this common clade, while Antilocapridae occupies a more basal position. The family Cervidae proper splits into three clades including the genera Cervus and Muntiacus (1), Capreolus, Hydropotes, Alces (2), and Rangifer, Odocoileus, and the remaining genera (3). In general, our phylogenetic reconstructions conform to the results of earlier molecular genetic studies, but substantially differ from the traditional taxonomy of Ruminantia.__________Translated from Genetika, Vol. 41, No. 7, 2005, pp. 910–918.Original Russian Text Copyright © 2005 by Kuznetsova, Kholodova, Danilkin.     

Phylogeny of Culicomorpha (Diptera)

The phylogeny of the families of Culicomorpha and their closest relatives are cladistically reinvestigated adding published information from several sources. A revised data matrix is presented and some characters are discussed. Different outgroups and options used, characters unordered or ordered, the results reweighted or not and the results discussed. Nymphomyiidae in all cladograms, alone or together with Thaumaleidae, forms the sister group of the traditional Culicomorpha and should be included in this infraorder as suggested by others. Superfamily Chironomoidea is not monophyletic as Thaumaleidae or Nymphomyiidae + Thaumaleidae form the sister group to the remaining traditional Culicomorpha. The mutual relationships of Chironomidae, Simuliidae and Ceratopogonidae are variable between cladograms. They form a monophyletic group with Chironomidae and Simuliidae as sister groups when characters are unordered and reweighted or when some characters are ordered, others unordered and the result reweighted. When the characters are ordered, or when a combination of ordered and unordered are used they form a Hennigian comb with the phyletic sequence Chironomidae/Ceratopogonidae/Simuliidae. When characters are ordered and reweighted the phyletic sequence is Chironomidae/Simuliidae/Ceratopogonidae. Culicoidea is monophyletic in all cladograms, but the division into superfamilies is not warranted.     

Pito (Erythrina berteroana) and chipilin (Crotalaria longirostrata), (fabaceae) two soporific vegetables of Central America

With more and more Latin Americans emigrating to the United States, their favorite foods are being imported to meet the demand that has arisen here. Two popular vegetables, especially of Guatemala and El Salvador, owe part of their popularity to their sedative effect. If eaten in sufficient quantity, they induce a deep, relaxing sleep. Prominent in these two countries is the tree called pito (Erythrina berteroana) (Fabaceae), the flowers and tender young shoots of which are sold in large quantity, fresh or frozen. The tree is exceedingly common because it is planted widely, both as a living fence and windbreak. Chipilin (Crotalaria longirostrata) of the same family, is valued for its young leaves and shoots, cooked and eaten as “greens” and also combined with beans, chopped meat or scrambled eggs. Chemical analyses show that the foliage is rich in calcium, iron, thiamine, riboflavin, niacin and ascorbic acid. The seeds and roots ofthe plant are undeniably toxic.     

Phylogeny of the gudgeons (Teleostei: Cyprinidae: Gobioninae)

The members of the cyprinid subfamily Gobioninae, commonly called gudgeons, form one of the most well-established assemblages in the family Cyprinidae. The subfamily is a species-rich group of fishes, these fishes display diverse life histories, appearances, and behavior. The phylogenetic relationships of Gobioninae are examined using sequence data from four loci: cytochrome b, cytochrome c oxidase I, opsin, and recombination activating gene 1. This investigation produced a data matrix of 4114 bp for 162 taxa that was analyzed using parsimony, maximum likelihood, and Bayesian inference methods. The phylogenies our analyses recovered corroborate recent studies on the group. The subfamily Gobioninae is monophyletic and composed of three major lineages. We find evidence for a Hemibarbus-Squalidus group, and the tribes Gobionini and Sarcocheilichthyini, with the Hemibarbus-Squalidus group sister to a clade of Gobionini-Sarcocheilichthyini. The Hemibarbus-Squalidus group includes those two genera; the tribe Sarcocheilichthyini includes Coreius, Coreoleuciscus, Gnathopogon, Gobiocypris, Ladislavia, Paracanthobrama, Pseudorasbora, Pseudopungtungia, Pungtungia, Rhinogobio, and Sarcocheilichthys; the tribe Gobionini includes Abbottina, Biwia, Gobio, Gobiobotia, Huigobio, Microphysogobio, Platysmacheilus, Pseudogobio, Romanogobio, Saurogobio, and Xenophysogobio. The monotypic Acanthogobio is placed into the synonymy of Gobio. We tentatively assign Belligobio to the Hemibarbus-Squalidus group and Mesogobio to Gobionini; Paraleucogobio and Parasqualidus remain incertae sedis. Based on the topologies presented, the evolution of swim bladder specializations, a distinctive feature among cyprinids, has occurred more than once within the subfamily.     

Phylogeny for genera of Nematodirinae (Nematoda: Trichostrongylina)

Monophyly for the Nematodirinae, with 5 genera, Murielus, Rauschia, Nematodiroides, Nematodirus, and Nematodirella was confirmed based on comparative morphology and phylogenetic analysis of structural characters. This concept for the nematodirines excludes the monotypic Lamanema chavezi, but otherwise corroborates generic-level diversity as defined in prior studies. Exhaustive analysis resulted in 1 most parsimonious tree (36 steps; consistency index [CI] = 0.94; retention index [RI] = 0.93; excluding phylogenetically uninformative characters, CI = 0.92). As an inclusive or monophyletic group, Nematodirinae was diagnosed by 8 synapomorphies (7 are unequivocal): (1) large eggs, (2) long filiform spicules, (3) basal division of the dorsal ray, (4) symmetrical membrane enveloping the spicule tips, (5) fused structure of the spicule tips, (6) absence of the gubernaculum, (7) development of the third-stage larva within the egg, and (8) ornamentation in the form of discrete bosses on the bursa. Exclusion of Lamanema will require new assessments of historical biogeography and the evolution of host associations for the nematodirines.     

Phylogeny of the hermit hummingbirds (trochilidae: Phaethornithinae)

A phylogeny of the hummingbirds of the genera Ramphodon, Eutoxeres, Glaucis, Threnetes, and Phaethornis is presented on the basis of external morphological characters. All 34 species of hermit hummingbirds are included in this study. Differences in 96 characters were examined with regard to their apomorphic (derived) or plesiomor‐phic (primitive) states, resulting in evolutionary trees drawn on the basis of cladistic principles. The most important results are: (1) “Ramphodon “ dohrnii is closer to Glaucis than to Ramphodon; (2) “Phaethornis” gounellei is the sister species to all Phaethornis and merits reevaluation as a separate genus, Anopetia; (3) Phaethornis philippii and P. koepckeae are the sister group to P. syrmatophorus, their straight bill having evolved independently of P. bourcieri; (4) the Phaethornis superciliosus/malaris species group includes P. longirostris as a third species; (5) Phaethornis subochraceus, P. pretrei, and P. augusti share a common ancestor, and (6) Phaethornis longuemareus (sensu Peters 1945) is polyphyletic, being comprised of four seperate species. Due to the lack of synapomorphies, the relationships of some species cannot be reliably determined on the basis of external morphological characters alone.     

Phylogeny and biogeography of Oriolidae (Aves: Passeriformes)

Understanding oscine passerine dispersal patterns out of their Australian area of origin is hampered by a paucity of robust phylogenies. We constructed a molecular phylogeny of the oscine family, Oriolidae, which is distributed from Australia through to the Old World. We used the phylogeny to assess direction and timing of dispersal and whether dispersal can be linked with the well‐documented movements of geological terranes in the Indonesian Archipelago. We sampled 29 of 33 species of Oriolidae from fresh tissue and from toe pads from museum specimens, and examined two nuclear introns and two mitochondrial genes. Model‐based phylogenetic analyses yielded strong support for clades that generally mirrored classical systematics. Biogeographical analyses and divergence time estimates demonstrated that the family originated in the Australo‐Papuan region from where it dispersed first to Asia and then onwards to Africa and the Philippines before back‐colonising Asia and the Indonesian archipelago. Thus, contrary to several other avian families in the region, Oriolidae represents a sequential dispersal pattern from Australia to Africa via Asia. However, it is noteworthy that the Pacific islands and archipelagos remain uncolonised and that members inhabiting Wallacea are recent colonisers suggesting that Oriolidae are poorly adapted to island life.     

Phylogeny of sulfate-reducing bacteria(1)

Three starvation regimes (a deficient culture medium, a saline buffer solution and distilled water) were evaluated for their possible effect on cell surface characteristics of Azospirillum lipoferum 1842 related to the initial adsorption of the bacterium to surfaces. The bacteria survived for 7 days in all media although they did not multiply. Upon transfer from a rich growth medium (nutrient agar) to starvation conditions, cell surface hydrophobicity dropped sharply but recovered its initial value within 24 to 48 h, except in phosphate-buffered saline, the length of the recovery period depending on the starvation medium. Starvation affected the sugar affinity of the A. lipoferum cell surface mainly towards p-aminophenyl-alpha-D-mannopyranoside, to a lesser extent to glucose, but not to other monosaccharides tested. Starvation changed the concentration of several cell surface proteins but did not induce the synthesis of new ones. The cell surface hydrophobic protein (43 kDa) of A. lipoferum 1842 was unaffected by any starvation treatment for a period of up to 48 h, but later disappeared. These data showed that starvation is not a major factor in inducing changes in the cell surface which lead to the primary phase of attachment of Azospirillum to surfaces.     

Phylogeny of the Gardenieae (Rubiaceae)

The phylogeny of Gardenieae (Rubiaceae) is evaluated using 70 morphological and anatomical characters and 81 terminal taxa. After successive reweighting of the characters and modified bootstrap tests the following is concluded. The position of the Diplosporinae genera Argocoffeopsis, Calycosiphonia, Cremaspora and Tricalysia with the genera belonging to the tribes Aulacocalyceae, Coffeeae, Octotropideae and Pavetteae, suggests that this subtribe does not belong in Gardenieae. Posoqueria is nested among outgroup genera and consequently is not a member of the tribe. Robbrecht & Puff's informal 'tetrad group' is monophyletic. Likewise, their 'Alibertia group' is supported as monophyletic, although slightly rearranged. On the other hand, their 'Aidia group' must he greatly expanded with several genera in order to be monophyletic, but the monophyly of this group is weakly supported. Several disputed genera should be included in Gardenieae ( Anomanthodia, Amaioua, Brachytome , and supposedly Bertiera ). Most inferred groups, however, exhibit low bootstrap values and should he viewed with caution.     

Phylogeny of the Nymphalidae (Lepidoptera)

A generic-level phylogeny for the butterfly family Nymphalidae was produced by cladistic analysis of 234 characters from all life stages. The 95 species in the matrix (selected from the 213 studied) represent all important recognized lineages within this family. The analysis showed the taxa grouping into six main lineages. The basal branch is the Libytheinae, with the Danainae and Ithomiinae on the next branch. The remaining lineages are grouped into two main branches: the Heliconiinae-Nymphalinae, primarily flower-visitors (but including the fruit-attracted Coeini); and the Limenitidinae (sensu strictu), Biblidinae, and the satyroid lineage (Apaturinae, Charaxinae, Biinae, Calinaginae, Morphinae, Brassolinae, and Satyrinae), primarily fruit-attracted. Data partitions showed that the two data sets (immatures and adults) are very different, and a partitioned Bremer support analysis showed that the adult characters are the main source of conflict in the nodes of the combined analysis tree. This phylogeny includes the widest taxon coverage of any morphological study on Nymphalid butterflies to date, and supports the monophyly and relationships of most presently recognized subgroups, providing strong evidence for the presently accepted phylogenetic scheme.     

39 Phylogeny of aulacoseira (bacillariophyta)

Ochromonas sensu lato is the largest genus in the Chrysophyceae, containing over 100 names. Ochromonas species are biflagellate, naked, plastid-bearing single cells, distinguished from loricate, scaled, colonial and colorless genera. Most, if not all, species of Ochromonas are mixotrophic, i.e., they photosynthesize but they also engulf bacteria and other small prey. Preliminary evidence from SSU rRNA sequences show that Ochromonas is a polyphyletic genus. Ochromonas tuberculata is the most distinct from all other Ochromonas species. The other Ochromonas species (examined thus far) are scattered in three clades. For example, O. danica and O. sphaerocystis are sister to Poterioochromonas stipitata and P. malhamensis . Four additional species (identified by light microscopy as O. elegans Doflein, O. globosa Skuja, O. ovalis Dolfein, O. sociabilis Pringheim ) have SSU rRNA sequences identical to P. malhamensis . Of these, only O. sociabilis has been transferred to Poterioochromonas . Thus, at least some species may be synonymous with others. Two clades of marine species are also known, one containing coastal species and the other containing open ocean species. A number of genera (some also polyphyletic) are interspersed amongst the Ochromonas species (e.g., Chrysolepidomonas, Chrysonephele, Chrysoxys, Cyclonexis, Dinobryon, Epipyxis, Uroglena, Uroglenopsis ). The goal of this research (just beginning) is to establish a monophyletic Ochromonas , probably by assigning some species to other genera (existing or new). One major problem is that the type species, O. triangulata Vysotskii , hasn't been observed in over 100 years, and it is unclear which of several clades of Ochromonas contains the type. Results will be discussed.     

Phylogeny of basal iguanodonts (Dinosauria: Ornithischia): an update

The precise phylogenetic relationships of many non-hadrosaurid members of Iguanodontia, i.e., basal iguanodonts, have been unclear. Therefore, to investigate the global phylogeny of basal iguanodonts a comprehensive data matrix was assembled, including nearly every valid taxon of basal iguanodont. The matrix was analyzed in the program TNT, and the maximum agreement subtree of the resulting most parsimonious trees was then calculated in PAUP. Ordering certain multistate characters and omitting taxa through safe taxonomic reduction did not markedly improve resolution. The results provide some new information on the phylogeny of basal iguanodonts, pertaining especially to obscure or recently described taxa, and support some recent taxonomic revisions, such as the splitting of traditional "Camptosaurus" and "Iguanodon". The maximum agreement subtree also shows a close relationship between the Asian Probactrosaurus gobiensis and the North American Eolambia, supporting the previous hypothesis of faunal interchange between Asia and North America in the early Late Cretaceous. Nevertheless, the phylogenetic relationships of many basal iguanodonts remain ambiguous due to the high number of taxa removed from the maximum agreement subtree and poor resolution of consensus trees.     

Phylogeny and evolution of Perezia （Asteraceae： Mutisieae： Nassauviinae）

A molecular phylogenetic analysis of most of the species of Perezia reveals that, as traditionally defined, the genus is not monophyletic with two species more closely related to Nassauvia than to Perezia. In addition, our results show that Burkartia （Perezia） lanigera is related to Acourtia and is the only member of that clade in South America. The remaining species are monophyletic and show a pattern of an early split between a western temperate and an eastern subtropical clade of species. Within the western clade, the phylogeny indicates a pattern of diversification that proceeded from southern, comparatively low-elevation habitats to southern high-elevation habitats, and ultimately into more northern high-elevation habitats. The most derived clades are found in the high central Andes, where significant radiation has occurred.