Typification of urban habitats,with ant assemblages of Moscow city taken as an example

A typification of Moscow city habitats is undertaken, based on their consideration as mosaic of patches and using such fundamental parameters as habitat origin (soil type), floristic composition, vegetation structure, and area of the biotopes. Altogether, 11 habitat types are distinguished: lawns, agrocenoses, xerophytic and mesophytic meadows, tall weeds, boulevards, small degenerative parks, small oppressed artificial parks, landscape parks, forest parks, and technocenoses. Such a classification is primarily useful for studying ants. The present paper describes the basic structure of ant assemblages in most types of urban biocenoses. The main pool of Moscow’s ant species ranked by their occurrence is as follows: Lasius niger (87%), Myrmica rugulosa (44%), Myrmica rubra (33%), Formica cunicularia (11%), Myrmica ruginodis (10%), etc. Leaf litter removal with a rake was shown to negatively affect the numbers, biomass, and species diversity of ant communities in urban areas with trees. The most stable two-species ant community revealed in Moscow City, termed an “elementary urban community,” consists of L. niger and M. rugulosa, with the former always outnumbering the latter.     

Isolation of endophytic fungi from tropical forest in Indonesia

Endophytic fungi (EPF) are an important contributor to fungal diversity. It is surmised that EPF colonizing plant roots have high diversity. This study aimed to alleviate the scarcity of information regarding EPF in tropical forests, by isolationg and identifying EPF from a tropical forests in Indonesia. Soils were collected from five forests: (1) Tectona grandis monoculture; (2) Swietenia macrophylla monoculture; (3) Gmelina sp., Artocarpus champeden, Dipterocarp mixed; (4) Dipterocarp primary; (5) Macaranga sp. secondary. Four trees (Calliandra calothyrsus, Paraserianthes falcataria, Sesbania grandiflora, and Cassia siamea) and three crops (Sorghum bicolor, Allium fistulosum, and Trifolium repens) were grown in the forest soils to trap EPF. EPF were isolated from roots and isolation rates were calculated. Based on the isolation rates, P. falcataria and S. bicolor were chosen and grown again in forest soils. EPF were isolated and identified by their rDNA ITS1 region. Twelve and 21 EPF were isolated from 250 roots of P. falcataria and 300 roots of S. bicolor, respectively. Identified EPF were from genera Acrocalymma, Fusarium, Tolypocladium, Penicillium, Talaromyces, Exophiala, Dictyosporium, Pseudochaetosphaeronema, Mariannaea, Trichoderma, and Mycoleptodiscus. Acrocalymma, Tolypocladium, Penicillium, Exophiala, Pseudochaetosphaeronema, Mariannaea, and Mycoleptodiscus spp. were isolated from only one forest. Fusarium, Talaromyces, and Trichoderma spp. were isolated from more than one forest. The numbers of EPF isolated from Gmelina sp., Artocarpus champeden, Dipterocarp mixed forest, and Macaranga sp. secondary forest were higher than those from other forests, suggesting that different plant species in forests affect the root EPF community.     

Grass Flies (Diptera,Chloropidae) of Crimean Peninsula

The fauna of grass flies (Diptera: Chloropidae) of the Crimean Peninsula is reviewed for the first time. The study is based on examination of the collection of the Zoological Institute, Russian Academy of Sciences (St. Petersburg), which includes the material collected in Crimea by the authors, the collections of the Zoological Museum of the M. V. Lomonosov Moscow State University and V. I. Vernadsky Crimean Federal University (Simferopol). The annotated list includes 92 species in 34 genera and three subfamilies. Most of the species (61) are recorded from Crimea for the first time. Six species, Chlorops horridus Becker, Ch. puncticornis Loew, Dicraeus (Oedesiella) beschovskii Nartshuk, Lasiosina chandleri Ismay, Meromyza meigeni Nartshuk and Oscinimorpha longirostris (Loew) are recorded for the first time from Russia and Eastern Europe. The characters for distinguishing Oscinimorpha arcuata Duda from O. longirostris (Loew), i.e., the structure of head and the male genitalia, are provided. The boreo-montane species Oscinella vastator (Curtis) and Meromyza curvinervis (Zetterstedt) are found on the Chatyrdag Mountain and Yaila (mostly forestless plateau in the Crimean Mountains). Species with southern European, Mediterranean and Macaronesian-Mediterranean ranges were recorded mostly on the South Coast of Crimea. The Crimean fauna of Chloropidae is compared with the faunas of Sardinia and Turkey.     

Study of Genetic Diversity of Earthworm <Emphasis Type="Italic">Lumbricus rubellus</Emphasis> Hoff. (Oligochaeta,Lumbricidae)

A polymorphism of the total protein (MY) and nonspecific esterase (EST) patterns was revealed in the musculocutaneous sac of earthworm Lumbricus rubellus by polyacrylamide gel electrophoresis. The revealed polymorphism is attributed to genetically determined codominant systems, each of which is controlled by the corresponding locus, My and Est, represented by two and four alleles, respectively. The allelic frequency distribution of both loci demonstrated genetic heterogeneity of four L. rubellus samples from Moscow and Moscow Region (311 individuals in total). Allelic frequencies of the revealed loci are proposed as genetic markers for monitoring L. rubellus generations in vermiculture.     

Morphological and molecular-genetic distinctions between adult mosquitoes <Emphasis Type="Italic">Culex torrentium</Emphasis> Martini and <Emphasis Type="Italic">C. pipiens</Emphasis> Linnaeus (Diptera,Culicidae) from Moscow Province

Morphological, biological, and molecular-genetic characteristics of Culex pipiens and C. torrentium, collected from two sites in Moscow and five sites in Moscow Province, were studied. Our results demonstrated the absence of any differences between females of these species in the R ₂/R ₂₊₃ ratio. Figures and photographs of the male genitalia are given. Differences between the species in the mDNA cytochrome oxydase I gene and the 1TS2 region of the rDNA were revealed. 90–100% of C. pipiens and 0% of C. torrentium were infested with the endosymbiotic bacterium Wolbachia pipientis.     

Testate amoebae (Testacea) in a <Emphasis Type="Italic">Formica lugubris</Emphasis> nest: Fauna composition and structure

The fauna of testate amoebae (Testacea) in a Formica lugubris anthill and in litter layers from the control soil area in a spruce forest, Moscow region, was represented by a total of 43 species and subspecies. Their numbers ranged from 11000 ind./g air-dry substrate in the surface layer of the anthill to 62000 ind./g in the lower litter layer A0H/A1, with variation in species diversity between the samples being insignificant (24–30 species). Representatives of the genera Centropyxis, Cyclopyxis, Plagiopyxis, Corythion, and Trinema were dominant, whereas most of other species were few in numbers. The group of testacean species in the anthill was not specific, being a derivative of the testacean complex inhabiting the surrounding soil. Differences between litter layers and between these layers and substrates from the anthill concerned mainly the composition of the testacean community, which proved to change in the course of plant material decomposition: the aerophilic complex of upper layers (dominated by Centropyxis aerophila and Trinema lineare) was substituted by an edaphophilic complex (with Plagiopyxis declivis being dominant) in the nest mound of the anthill and in the lower litter layers. Plagiopyxis penardi was a eudominant species in the nest mound. Its especially high abundance is explained by deep transformation of plant remains in the nest (from moder to mull-like substrate) as the result of ant life activities.     

Antibiotic activity of bacterial endobionts of basidiomycete fruit bodies

Bacterial strains (93 isolates) capable of growth on full-strength nutrient media were isolated from 86 fungal fruit bodies collected in the Moscow region. Antimicrobial activity of the endobiont isolates against 12 bacterial and fungal test strains (including drug-resistant ones) was studied in submerged cultures. Most of the strains (84.9%) were found to produce antibiotic compounds with different antimicrobial properties, including antifungal activity in 18.3% of the strains. Morphological characteristics and analysis of the 16S rRNA gene sequences were used to determine the taxonomic position of 16 bacterial strains of the following 10 species: Bacillus subtilis, Ewingella americana, Pseudomonas sp., Stenotrophomonas maltophilia, as well as Achromobacter spanius, B. licheniformis, Hafnia paralvei, Micrococcus terreus, Nocardia coeliaca, and St. rhizophila, which have not been previously known to be endobionts of basidiomycete fruit bodies. Antimicrobial activity of A. spanius, E. americana, H. paralvei, M. terreus, N. coeliaca, and St. rhizophila has not been reported previously. Complex mechanisms of symbiotic relations between fungi and bacteria, including those associated with antibiotic formation, probably developed in the course of co-evolution.     

A record of the Far Eastern crane fly <Emphasis Type="Italic">Tipula</Emphasis> (<Emphasis Type="Italic">Platytipula</Emphasis>) <Emphasis Type="Italic">moiwana</Emphasis> (Diptera,Tipulidae) in Moscow

The crane fly Tipula (Platytipula) moiwana (Matsumura, 1916) occurs in the southern Russian Far East, including Sakhalin Island and the Kuril Islands, in Japan (Hokkaido), and in northeastern China. Recently this species was found in Moscow. The reason for the appearance of this species in Moscow is unknown.     

Marine algal flora of the Late Viséan (Early Carboniferous) of the Moscow Basin

New data on the taxonomic composition of the algal flora of the Late Viséan of the Moscow Basin are discussed based on newly collected material. The algal assemblage comprises 24 taxa, 14 taxa identified to species, nine identified to genus, and one taxon not positively identified. Representatives of the genera Anthracoporella, Anthracoporellopsis, Asphaltina, Asphaltinella, Asteroaoujgalia, and Zidella are recorded for the first time from the Upper Viséan of the Moscow Basin. The large geographic ranges of these benthic calcareous algae suggest a relatively free exchange of the floral elements of the Late Viséan Moscow Basin with the remote basins of North America and the Paleotethys in the Aleksinian and Mikhailovian time. The new data fill an important gap in the current state of knowledge of Late Viséan marine algae.     

Dispersal of remnant endangered trees in a fragmented and disturbed forest by frugivorous birds

Most endangered plant species in a fragmented forest behave as a unique source population, with a high dependence on frugivorous birds for recruitment and persistence. In this study, we combined field data of dispersal behavior of birds and GIS information of patch attributes to estimate how frugivorous birds could affect the effective dispersal pattern of Chinese yew (Taxus chinensis) in a fragmented and disturbed forest. Nine bird species were observed to visit T. chinensis trees, with Urocissa erythrorhyncha, Zoothera dauma and Picus canus being the most common dispersers. After foraging, six disperser species exhibited different perching patterns. Three specialist species, P. canus, Turdus hortulorum, and Z. dauma stayed in the source patch, while three generalist species, U. erythrorhyncha, Hypsipetes mcclellandii, and H. castanonotus, could perch in bamboo patches and varied in movement ability due to body size. As a consequence of perching, dispersers significantly contributed to the seed bank, but indirectly affected seedling recruitment. Moreover, the recruitment of T. chinensis was also affected by patch attributes in a fragmented forest (distances to source patch, patch type, size). Our results highlighted the ability of unique source population regeneration of T. chinensis in a fragmented forest, with high dependence on both frugivorous birds and patch attributes, which should be considered in future planning for forest management and conservation.     

DNA analysis reveals rich diversity of <Emphasis Type="Italic">Hydnotrya</Emphasis> with emphasis on the species found in China

Molecular analysis of the truffle genus Hydnotrya was conducted with nrDNA-ITS sequences available including newly generated sequences from Chinese specimens. Twenty-one phylotypes were recognized with the threshold of 97% ITS identity. Seven phylotypes corresponded to the described species, H. bailii, H. cerebriformis, H. cubispora, H. laojunshanensis, H. michaelis, H. cf. variiformis, and H. tulasnei, and four phylotypes represented by Chinese specimens were described and illustrated as new species, i.e., H. badia, H. brunneospora, H. nigricans, and H. puberula. The remaining ten phylotypes may represent undescribed species. Moreover, the 21 phylotypes grouped into four distinct clades each having as core species H. cerebriformis, H. cubispora, H. michaelis, and H. tulasnei, respectively, which were strongly supported by phylogenetic analysis and morphological characterization.     

New bryozoans (Stenolaemata) from the Middle Jurassic of Moscow City and the Moscow Region

Five new species of stenolaematous bryozoans are described from the Middle Callovian of Moscow City (Krasnopresnenskii Region) and the Moscow Region (Gzhel’ Railroad Station and the quarry between the small towns of Rechitsy and Troshkovo): Entalophora alexeevi sp. nov., Cellulipora retshitsiensis sp. nov., Diplosolen pravus sp. nov., Siphodictyum primarium sp. nov., and Ceata kamushkiensis sp. nov. The last four species belong to the genera that have never been recorded from deposits older than the Lower Cretaceous. The presence of different types of heterozooecia in these bryozoans shows that the functional polymorphism of zooids developed considerably in the class Stenolaemata as early as the Middle Jurassic.     

Additions to the check list of bark beetles (Coleoptera,Curculionidae: Scolytinae) from Leningrad Province,Russia

The field work of the authors during the last 16 years in both the western and the eastern parts of Leningrad Province, Russia, has resulted in the addition of 7 species to the regional list of bark beetles, namely: Hylurgus ligniperda F., Crypturgus subcribrosus Egg., Pityogenes irkutensis Egg., Scolytus mali Bechst., S. scolytus F., S. pygmaeus F., and Xyleborinus attenuatus Blandf. Of these species, P. irkutensis occurs only in the eastern districts of Leningrad Province, C. subcribrosus, over the whole territory, and the remaining species, only in the western districts. We suggest excluding Polygraphus proximus Blandf. from the regional faunal list. As a result, the updated list of the bark beetle species of Leningrad Province comprises 75 taxa. New data on findings of rare species in the region are considered.     

Forest Type Influences Population Densities of Nocturnal Lemurs in Manompana,Northeastern Madagascar

Forest loss, fragmentation, and anthropization threaten the survival of forest species all over the world. Shifting agriculture is one of these threatening processes in Madagascar. However, when its cycle is halted and the land is left to regenerate, the resulting growth of secondary forest may provide a viable habitat for folivorous and omnivorous lemur species. We aimed to identify the response of nocturnal lemurs to different successional stages of regenerating secondary, degraded mature, and mature forest across a mosaic-type landscape. We surveyed four nocturnal lemur species (Avahi laniger, Microcebus cf. simmonsi, Allocebus trichotis, and Daubentonia madagascariensis) in four forest types of varying habitat disturbance in northeastern Madagascar. We estimated densities in mature and regenerating secondary forest for the eastern woolly lemur (Avahi laniger) and mouse lemur (Microcebus cf. simmonsi), two sympatric species with folivorous and omnivorous diets respectively. We did not estimate densities of Allocebus trichotis and Daubentonia madagascariensis owing to small sample size; however, we observed both species exclusively in mature forest. We found higher population densities of A. laniger and M. cf. simmonsi in secondary than in mature forest, showing the potential of regenerating secondary forest for lemur conservation. Several environmental factors influenced the detectability of the two lemur species. While observer and habitat type influenced detection of the eastern woolly lemur, canopy height and vine density influenced detection of mouse lemurs. Understanding how different species with different diets interact with anthropogenically impacted habitat will aid future management decisions for the conservation of primate species.     

Chemical defences of native European coccinellid eggs against intraguild predation by the invasive Asian coccinellid, <Emphasis Type="Italic">Harmonia axyridis</Emphasis> (Pallas)

Harmonia axyridis (Pallas) is a coccinellid of Asian origin that has recently invaded substantial parts of Europe and is suspected to affect native coccinellid populations through intraguild predation and competition for food. Previous work has shown that two species from the Calvia genus appeared to be well protected against H. axyridis predation. To deepen our understanding on chemical protection of Calvia spp. and the predation risk by H. axyridis, we tested for susceptibility and palatability of Calvia spp. and H. axyridis eggs against predation by H. axyridis neonate larvae. Results show that eggs of C. quatuordecimguttata were mostly not eaten by H. axyridis, while eggs of the congeneric C. decemguttata were found to be largely unprotected against predation by the invasive coccinellid. We also observed that H. axyridis first instars successfully cannibalized on conspecific eggs. Removing the surface chemicals from C. quatuordecimguttata eggs resulted in significantly reduced protection from being preyed upon by H. axyridis, while applying these extracts onto C. decemguttata and H. axyridis eggs resulted in increased protection against H. axyridis larvae. The importance of surface chemicals in the interactions between H. axyridis and native coccinellids was confirmed by GC–MS analysis, showing a high diversity of hydrocarbons located on the surface of C. quatuordecimguttata eggs, i.e. more than twice as many when compared to C. decemguttata. Survival of H. axyridis larvae feeding on eggs of C. quatuordecimguttata, C. decemguttata or conspecific eggs, from which surface chemicals were removed by washing them with hexane, was not different from survival on unwashed eggs.     

Heritable bacterial endosymbionts in native and invasive populations of <Emphasis Type="Italic">Harmonia axyridis</Emphasis>

Harmonia axyridis Pallas (1773) (Coleoptera: Coccinellidae) is the well-studied system of invasive insect species. Native and invasive parts of the area of H. axyridis are isolated geographically. We studied the species composition and the distribution of bacterial symbionts Spiroplasma and Rickettsia in seven localities of the native area and six localities of the invasive area of H. axyridis. Rickettsia was detected in H. axyridis populations for the first time. We found that the proportion of beetles infected with Rickettsia in native and invasive populations of H. axyridis is about 0.03. Spiroplasma was found only in native populations of H. axyridis. The proportion of infected individuals with Spiroplasma in native populations of H. axyridis is about 0.08. All studied native populations of H. axyridis are infected with Spiroplasma, while all invasive populations are not. We discuss the possible influence of Spiroplasma and Rickettsia in the formation of invasive populations of H. axyridis.     

The EU protected taxon <Emphasis Type="Italic">Morimus funereus</Emphasis> Mulsant, 1862 (Coleoptera: Cerambycidae) and its western Palaearctic allies: systematics and conservation outcomes

Morimus funereus is a large longhorn beetle included in the European Habitats Directive and in previous releases of the IUCN red list. It represents a flagship species of old-growth forest saproxylic communities in E and SE Europe. The morphologically based taxonomy of W Palaearctic Morimus is rather unstable due to high phenetic intrapopulational and geographic variability and different authors have attempted to recognise one to five different taxa of specific/subspecific rank. No previous molecular data are available for the genus Morimus. Here, for the first time, a molecular approach based on COI and ITS2 gene sequences was applied in European and Anatolian Morimus specimens. The genetic variability among Euro-Anatolian Morimus populations and the geographical structure suggest that they can not be ascribed to the currently accepted five W Palaearctic Morimus species and may actually represent a single, genetically and morphologically variable biological species (M. asper), highlighting the necessity of an extended taxonomical revision. In light of these results, a phylogeographical hypothesis of postglacial colonisation of the central Mediterranean area has been developed and the consequences of this new taxonomic arrangement regarding conservation strategies for “Morimus funereus” and allied taxa in Europe and Turkey are discussed.     

The genus <Emphasis Type="Italic">Unispirifer</Emphasis> Campbell (Brachiopoda,Spiriferida) in the Early Carboniferous of the Moscow Syneclise

Two new species of the genus Unispirifer Campbell, U. semicircularis and U. parvus, are established as a result of a revision of Early Carboniferous spiriferids from the Moscow Syneclise. These forms have previously been described under Spirifer tornacensis Koninck, 1883 and S. taidonensis Tolmatschow, 1924.     

Novel fungi from an ancient niche: lachnoid and chalara-like fungi on ferns

A survey was conducted in Brazil to collect fungi on ferns. Based on morphology and inferred phylogeny from DNA sequences of two loci, namely the internal transcribed spacer (ITS) regions and the large subunit nuclear ribosomal RNA gene (LSU), several species belonging to chalara-like genera and lachnoid fungi were recognized. Eighteen fungal isolates, collected from five host species, representing 10 different localities were studied. Three novel genera (Lachnopsis, Scolecolachnum and Zymochalara), and six novel species (Bloxamia cyatheicola, Lachnopsis catarinensis, Lachnopsis dicksoniae, Scolecolachnum pteridii, Zymochalara lygodii and Zymochalara cyatheae) are introduced. Furthermore, two new combinations (Erioscyphella euterpes and Erioscyphella lushanensis) are proposed. Two novel taxa (Lachnopsis catarinensis and Lachnopsis dicksoniae) may be included in the list of potentially endangered fungal species in Brazil, if proven to be restricted to their tree-fern host, Dicksonia sellowiana, which is included in the official list of endangered plant species in Brazil.     

Infectious Diseases in Free-Ranging Blonde Capuchins, <Emphasis Type="Italic">Sapajus flavius,</Emphasis> in Brazil

The main threats to primates worldwide are the degradation, fragmentation, and loss of their habitats; hunting (especially for bushmeat); and illegal trade. For many species, the most important threat is forest fragmentation, resulting in small populations that are restricted to isolated forest patches. In this situation, primates are particularly vulnerable to disease. The Endangered blonde capuchin (Sapajus flavius) is now restricted to a few forest patches in Northeast Brazil. We investigated the occurrence of parasites and bacterial diseases in one of three free-ranging groups of S. flavius in a small forest patch in Paraíba state, Northeast Brazil. We tested for antibodies against Leishmania spp., Trypanosoma cruzi, Toxoplasma gondii, Leptospira spp. (24 strains), and Brucella spp.. We used molecular analysis to detect Plasmodium spp., and evaluated blood smears for the presence of hemoparasites. All individuals tested negative for Leptospira spp. and B. abortus, but 8 of 48 (16%) presented antibodies for both Leishmania spp. and T. cruzi. We identified antibodies to T. gondii in 12% of the individuals tested. Plasmodium brasilianum infection was present in 4% of the individuals tested, and blood smears showed microfilariae parasites in 46% of the individuals tested. The occurrence of these infectious diseases in S. flavius may pose a significant threat in terms of reduced recruitment and poor survival rates, and an understanding of the influence of pathogens is crucial for the management of small populations of primates.