慈姑45S rDNA和端粒序列检测及核型分析

以45S r DNA和拟南芥型端粒序列为探针对慈姑(Sagittaria trifolia L.)有丝分裂中期染色体进行单色和双色荧光原位杂交分析,并用银染方法检测慈姑45S r DNA位点的表达,最后结合染色体测量数据和45S r DNA杂交信号建立慈姑的核型。结果显示,慈姑的单倍基因组总长度为76.9±1.38μm,最长染色体为11.55±0.10μm,最短染色体为4.54±0.27μm;慈姑的核型公式为:2n=22=2m+2sm+14st+4t,核型不对称性参数CI、A1、A2、As K(%)、AI分别为19.86±11.06、0.72、0.27、78.82、15.29,核型属于Stebbins类型中的3B型。慈姑具有3对45S r DNA位点,分别位于第8、9、10号染色体的短臂末端。拟南芥型端粒序列的杂交信号出现在慈姑每一条染色体的长、短臂末端。银染检测到6个Ag-NOR和6个核仁,表明3对45S r DNA位点在间期核都有表达。本研究结果为药食兼用植物慈姑提供了分子细胞遗传学基础资料。     

S基因在甘蓝EDFs上的高分辨率荧光原位杂交定位

植物细胞壁及细胞质的存在和植物染色体所具有的高浓缩特性,限制高效率原位杂交定位在植物细胞内的进行。针对小型染色体芸薹属植物采用常规方法DNA制备纤维的效果不佳的特点,新建制备方法：利用减数分裂前期的染色体为材料,在硅化的玻片上先后通过蛋白酶解和乙醇：乙酸（3：1）的适当处理,采用移动界而法制备EDFs。制备的EDFs比未经伸长处理的染色体在经向和横向方面分别取得较高程度的伸长与膨胀,长度可达到89-257μm,比相应地中期染色体增长30107倍,分辨率可达42．853．0kb。利用SRK和SCR两种探针同时在甘蓝粗线期染色体和EDFs上进行了原位杂交,首次鉴定了S基因座在其单倍体基因组中单拷贝性。在杂交信号检测中尽管未经过信号放大,但仍然可以观察到清晰的绿色信号;经荧光显微镜观察,在单一的EDF上发现两个相距1μm的SCR和SRK的信号点,由此得出局部分辨率为4kb的最高伸长度。     

在植物粗线期染色体和DNA纤维上的荧光原位杂交技术

介绍了两种荧光原位杂交技术的详细实验步骤。第一种技术是在减数分裂粗线期染色体上的荧光原位杂交,包括从花粉母细胞中制备粗线期染色体和在这种染色体上定位ＤＮＡ序列,其分辨率水平能够达到１００ｋｂ。第二种技术是从植物细胞核中制备ＤＮＡ纤维,并在上面进行原位杂交,能够直接分析ＤＮＡ序列的分子排列关系,其分辨率水平能达到几个ｋｂ。为了说明这两种原位杂交技术在研究基因组和染色体结构、构建高分辨率的ＤＮＡ物理图谱上的能力,将展示用该技术直接分析番茄染色体端粒重复序列和端粒联接重复序列的染色体定位和ＤＮＡ分子排列。     

大黄素对宫颈癌Hela细胞端粒损伤作用的研究

该文探究了抗肿瘤药物、化疗增敏剂大黄素对人宫颈癌Hela细胞端粒和端粒酶活性的影响。利用磷酸化组蛋白H2AX(γ-H2AX)免疫荧光–端粒荧光原位杂交技术检测端粒区特异性DNA损伤水平。利用中期染色体–端粒荧光原位杂交技术检测端粒异常信号,包括多端粒信号(multitelomeric signals,MTSs)和端粒信号缺失(signal free ends,SFEs)。利用荧光定量PCR方法和端粒重复扩增程序分别检测端粒相对长度和端粒酶活性。结果显示,与0μmol/L对照组相比,20μmol/L大黄素处理Hela细胞48 h能够诱导端粒长度缩短至80%,同时还发现端粒功能障碍损伤灶(telomere dysfunction induced foci,TIFs)和端粒异常信号增多,包括MTSs由1.65%增加至3.98%(P0.01)、SFEs由2.74%增加至8.49%(P0.01)。同时,结果还发现,大黄素处理后,Hela细胞端粒酶活性显著升高,10μmol/L和20μmol/L大黄素处理48 h后,端粒酶活性分别升高为对照组的1.42倍(P0.05)和1.92倍(P0.01)。综上,实验结果表明,大黄素的急性暴露能够引起端粒功能障碍以及端粒酶活性升高,后者可能与端粒损伤后修复有关。     

利用栽培稻C_0t-1 DNA和基因组DNA比较分析宽叶野生稻基因组

利用AA染色体组栽培稻的中高度重复序列C0t-1 DNA和基因组DNA作为探针,通过荧光原位杂交技术对宽叶野生稻(Oryza latifolia)(CCDD染色体组)进行了比较基因组分析。结果显示,在宽叶野生稻染色体上,C0t-1 DNA的杂交信号没有基因组DNA的杂交信号明显;杂交信号主要分布在着丝粒、近着丝粒及端粒区域;随着洗脱严谨度的不同,杂交信号呈现出较高的种特异性。本研究以不同洗脱严谨度下的荧光原位杂交结果为依据,对宽叶野生稻进行的核型分析,可进一步提高稻属染色体识别的准确性。     

利用栽培稻C0t-1 DNA和基因组DNA比较分析宽叶野生稻基因组

利用AA染色体组栽培稻的中高度重复序列C0t-1 DNA和基因组DNA作为探针,通过荧光原位杂交技术对宽叶野生稻（Oryza latifolia）（CCDD染色体组）进行了比较基因组分析。结果显示,在宽叶野生稻染色体上,C0t-1 DNA的杂交信号没有基因组DNA的杂交信号明显;杂交信号主要分布在着丝粒、近着丝粒及端粒区域;随着洗脱严谨度的不同,杂交信号呈现出较高的种特异性。本研究以不同洗脱严谨度下的荧光原位杂交结果为依据,对宽叶野生稻进行的核型分析,可进一步提高稻属染色体识别的准确性。     

植物荧光原位杂交技术的发展及其在植物基因组分析中的应用

荧光原位杂交(FISH)是在染色体、间期核和DNA纤维上定位特定DNA序列的一种有效而精确的分子细胞遗传学方法。20年来,植物荧光原位杂交技术发展迅速:以增加检测的靶位数为目的,发展了双色FISH、多色FISH和多探针FISH鸡尾酒技术;为增加很小染色体目标的检测灵敏度,发展了BAC-FISH和酪胺信号放大FISH(TSA-FISH)等技术;以提高相邻杂交信号的空间分辨力为主要目的,发展了高分辨的粗线期染色体FISH、间期核FISH、DNA纤维FISH和超伸展的流式分拣植物染色体FISH技术。在植物基因组分析中,FISH技术发挥了不可替代的重要作用,它可用于:物理定位DNA序列,并为染色体的识别提供有效的标记;对相同DNA序列进行比较物理定位,探讨植物基因组的进化;构建植物基因组的物理图谱;揭示特定染色体区域的DNA分子组织;分析间期核中染色质的组织和细胞周期中染色体的动态变化;鉴定植物转基因。     

利用流式荧光原位杂交法测定细胞端粒长度

目的建立利用流式荧光原位杂交法检测细胞端粒长度的技术方法。方法以端粒酶敲除的G3小鼠和同龄野生型小鼠为检测对象,分离其外周血中的单个核细胞后与肽核酸荧光探针杂交,用流式细胞仪采集和分析其端粒长度,分别用荧光原位杂交方法和SYBR Green荧光定量PCR方法验证其准确性。结果流式荧光原位杂交法测定G3小鼠细胞端粒相对长度与C57BJ/6野生型小鼠相比为0.5345,荧光定量PCR测定端粒相对长度为0.5717,结果基本一致。结论流式细胞术与原位杂交方法结合起来检测细胞端粒的平均长度可靠易行,对单个核细胞端粒平均长度的检测有较高的实用性。     

定量荧光原位杂交测定端粒长度

目的:应用定量荧光原位杂交(Q-FISH)方法测定端粒长度。方法:选取4种端粒长度均一的标准细胞株采用Q-FISH的方法做出荧光亮度与端粒长度的标准曲线,从而得出实验细胞株的端粒长度,与DNA印迹法测定末端限制性片段(TRF)长度进行二者之间的相关性分析。结果:检测荧光强度的最佳线性曝光时间为400ms,相对于DNA印迹法,定量荧光原位杂交(Q-FISH)法所需标本量少,实验周期短,端粒长度结果与Southern杂交法具有很好的相关性。结论:采用定量荧光原位杂交方法测端粒长度具有重复性好、精确可靠的特点,适用于对珍贵标本的端粒改变进行分析。     

番茄的CPD带型和45S rDNA位点的鉴别

采用CPD（PI和DAPI组合）染色对番茄减数分裂粗线期和有丝分裂中期染色体进行了显带分析,随后用两种不同的45S rDNA克隆在相同的分裂相进行了荧光原位杂交定位分析。CPD染色在8条粗线期染色体上显示出了10条红色的CPD带纹,在6对有丝分裂中期染色体上显示出了12条CPD带纹。有丝分裂中期染色体上的CPD带纹与粗线期染色体上显著的带纹具有对应性。用改良的CPD染色程序清晰而稳定地显示出这些特征性的CPD带纹为番茄的染色体,特别是有丝分裂中期染色体提供了新的识别标记。用番茄的一个45S rDNA克隆进行的荧光原位杂交,不仅在位于2号染色体短臂的随体上显示了强的杂交信号,而且在粗线期染色体的5个CPD带区或有丝分裂中期染色体的4对CPD带区显示了弱的杂交信号。然而,用来自小麦的45S rDNA克隆pTa71进行的原位杂交却只在随体上显示了杂交信号。鉴于所用的两个45S rDNA克隆在序列上的差异,推断在番茄基因组中只有随体含有45S rDNA单位的编码区,即番茄只有一对45S rDNA位点。     

Giemsa-based cytological assessment of area,shape and nucleus:cytoplasm ratio of goblet cells of rabbit bulbar conjunctiva

Goblet cells were visualized in impression cytology specimens from bulbar conjunctiva of the rabbit eye using Giemsa staining. Highly magnified images were used to generate outlines of the goblet cells and their characteristic eccentric nuclei. Using sets of 10 cells from 15 cytology specimens, I found that the longest dimension of the goblet cells averaged 16.7 ± 2.3 μm, the shortest dimension averaged 14.4 ± 1.8 μm and the nucleus averaged 6.3 ± 0.8 μm. The goblet cells were ellipsoid in shape and the longest:shortest cell dimension ratio averaged 1.169 ± 0.091. The goblet cell areas ranged from 108 to 338 μm² (average 193 ± 50 μm²). The area could be predicted reliably from the longest and shortest dimensions (r² = 0.903). The areas of goblet cell nuclei were 15–58 μm² (average 33 ± μm²) and the nucleus:cytoplasm area fraction was predictably greater in smaller goblet cells and less in the larger goblet cells (Spearman correlation = 0.817). The nuclei were estimated to occupy an average of 9.5% of the cell volume. The differences in size, shape and nucleus:cytoplasm ratio may reflect differences in goblet cell maturation.     

Karyotype Analysis of 5 Species of Polygonatum Mill.

The present paper reports the chromosome numbers and karyotypes of five species in Polygonatum from Anhui of China. The materials used in this work are listed in Table 1, Photomicrographs of somatic metaphase and karyograms of the five species of Polygonatum in Plate 1, 2, 3, the idiograms in Fig. 1-11 and a comparison of the karyotype of them is provided in Table 2. The results are shown as follows: 1. Polygonatum odoratum (Mill.)Druce Two materials were examined. One from Mt. Huangshan, Anhui, has 2n= 16 = 10m (3sc)+ 6sm (Plate 1 :A, B). The idiogram is shown in Fig. 1. The chromosomes range in length from 2.85 to 8.85 μm, with the total length 48.63μm and the ratio of the longest to the shortest 3.11, The karyotype belong to Stebbins’(1971) 2B. The two chromosomes of the first pair have arm ratios 1.01 and 1.29 respectively, and The first pair has one chromosome carrying a satellite attached to the short arm, showing heterozyosity .The chromosome num ber of 2n= 16 in P. odoratum and its karyotype are reported for the first time. The other from Langyashan, Chu - xian, Anhui, is found to have 2n = 18 = 10m (Isc)+2sm+6st(2sc) (Plate 1: C, D). The idiogram is shown in Fig. 2. The chromosomes range in length from 2.43 to 8.29μm, with the total length 46.67µm and the ratio of the longest to the shortest 3.41. The karyotype is also of 2B. In a somatic chromosome complement the 2nd pair have one chromosome carrying a satellite attached to the long arm, showing heterozygosity. 2. Polygonatum filipes Merr. Two materials were examined. One from the Huangshan, Anhui is found to have two cytotypes: 2n= 16 and 2n=22. This paper reports one of them. The karyotype formula is 2n=22=8m+8sm(2sc)+6st(Plate 3: Q, R). The idiogram is shown in Fig. 3. The chromosomes range in length from 2.55- 5.85μm, with the total length 45.01 μm and the ratio of the longest to the shortest 2.29. The karyotype belongs to 3B. The other material from the Fangchang, Anhui, is shown to have four cytitypes: 2n= 14, 2n= 16, 2n=20 (Plate 3: W) and 2n=22. This paper reports two of them. Type I: the karytype formula is 2n=14=10m+4sm (Plate 3: S, T). The idiogram is shown in Fig. 5. The chromosomes range in length from 2.59 to 7.61μm, the total length 37.44μm and the ratio of the longest to the shortest is 2.94. the karyotype belongs to 2B. Type II :The karyotype formula is 2n=16=8m+4sm+4st (Plate 3: U, V). The idiogram is shown in Fig. 4. The chromosomes range in length from 2.65 to 8.21 μm, the total length 46.01 μm and the ratio of the longest to the shortest 3.10. The karyotype belongs to 2B. The chromosome numbers of 2n=20, 2n= 14 and 2n=22, and karyotype of 2n= 14 and 2n=22 in P. filipes are reported for the first time. 3. Polygonatum cytonema Hua Two materials were examined. One from the Langyashan, Chuxian, anhui, is found to have 2n = 18 = 8m (2sc)+ 6sm+ 4st (Plate 2: K, L). The idiogram is shown in Fig. 7. The chromosomes range in length from 3.41 to 9.21 μm, the total length 56.34μm and the ratio of the longest to the shortest is 2.70. The karyotype belongs to 2B. The other material from the Huangshan, Anhui, has two cytotypes: 2n=20 and 2n= 22. Type I: The karyotype formula is 2n= 20= 8m+ 6sm+ 6st (Plate 2: M, N). The idiogram is shown in Fig. 8. The chromosomes range in length from 1.75 to 5.03μm, with the total length 32. 91μm and the ratio of the longest to the shortest 2. 87. The karyotype is also of 2B. Type II: The karyotype formula is 2n=22=6m+ 8sm+4st+ 4t (Plate 2: O, P ). The idiogram is Shown in Fig. 10. The chromosomes range in length from 1.75 to 4.95 μm, with total length 35.05μm and the ratio of the longest to the shortest 2.83. The karyotype brlongs to 3B. 4. Polygonatum desoulayi kom. The material from Xuancheng, Anhui, is found to have karyotype 2n = 22 = 10m (2sc) + 6sm (lsc) + 6st ( Plate 2. I, J). The idiogram is shown in Fig. 6. The chromosomes range in length from 1.86 to 5.61μm, with the total length 41.98μm and the ratio of the longest to the shortest 3.02. The karyotype is also of 3B. The first pair has one chromosome carrying a satellite attached to the long arm, showing heterozygosity. The chromosome number and karyotype of Chinese material are reported for the first time. 5. Polygonatum verticillatum (L.) All. The material from the Langyashan, Chuxian, Anhui is found to have two cytotypes. Type 1: the karyotype formula is 2n = 18 = 2m+ 2sm+ 10st+ 2t+ 2T (Plate 1: G, H). The idiogram is shown in Fig.9. The chromosomes range in length from 1.86 to 4.03μm, with total length 28.28μm and the ratio of the longest to the shortest 2.17. The karyotype classification belongs to 3B. Type II: The karyotype formula is 2n=24=6m+4sm+12st+2T (Plate 1: E, F). The idiogram is shown in Fig. II. The chromosomes range in length from 2.01 to 5.03μm, with total length 41.36μm and the ratio of longest to shortest 2.50. The karyotype is also of 3B. The chromosome numbers and karyotypes of Chinese material are reported for the first time.     

High-resolution single-copy gene fluorescence in situ hybridization and its use in the construction of a cytogenetic map of maize chromosome 9

High-resolution cytogenetic maps provide important biological information on genome organization and function, as they correlate genetic distance with cytological structures, and are an invaluable complement to physical sequence data. The most direct way to generate a cytogenetic map is to localize genetically mapped genes onto chromosomes by fluorescence in situ hybridization (FISH). Detection of single-copy genes on plant chromosomes has been difficult. In this study, we developed a squash FISH procedure allowing successful detection of single-copy genes on maize (Zea mays) pachytene chromosomes. Using this method, the shortest probe that can be detected is 3.1 kb, and two sequences separated by approximately 100 kb can be resolved. To show the robust nature of this protocol, we localized nine genetically mapped single-copy genes on chromosome 9 in one FISH experiment. Integration of existing information from genetic maps and the BAC contig-based physical map with the cytological structure of chromosome 9 provides a comprehensive cross-referenced cytogenetic map and shows the dramatic reduction of recombination in the pericentromeric heterochromatic region. To establish a feasible mapping system for maize, we also developed a probe cocktail for unambiguous identification of the 10 maize pachytene chromosomes. These results provide a starting point toward constructing a high-resolution integrated cytogenetic map of maize.     

Construction of a garlic BAC library and chromosomal assignment of BAC clones using the FISH technique.

For molecular and cytogenetic studies, two partial bacterial artificial chromosome (BAC) libraries of the garlic cultivar Allium sativum L. 'Danyang' were constructed using high molecular weight (HMW) garlic DNA, the pBAC1-SACB1 vector, and the pIndigoBAC536 vector. The average insert size of the BAC library was about 90 kb. The sequence compositions of the BAC clones were characterized by Southern hybridization with garlic genomic DNA and a repetitive sequence clone of garlic. Two BAC clones with weak signals (thus implying mostly unique sequences), GBC2-5e and GBC2-4d, were selected for FISH analysis. FISH analysis localized the GBC2-5e (approximately 100 kb) BAC clone on the long arm of garlic chromosome 7. The other BAC clone, GBC2-4d (approximately 110 kb), gave rise to discrete FISH signals on a mid-size early metaphase chromosome. The FISH screening with BAC clones proved to be a useful resource for molecular cytogenetic studies of garlic, and will be useful for further mapping and sequencing studies of important genes of this plant.     

A new Isospora species of passerines in the family Turdidae from Costa Rica

Seven thrush species (Turdidae) from Costa Rica were examined for intestinal parasites; 21 of the 84 (25%) birds sampled were positive for a new species of Isospora. Oocysts of Isospora zorzali n. sp. have thin, smooth, double, and colorless walls; they measure 19.7 ± 1.5 μm × 18.6 ± 1.4 μm (16-24 μm × 15-21 μm), with an average length-width ratio of 1.1 μm. Sporocysts are ovoid, measure 8.5 ± 1.1 μm × 14.5 ± 1.7 μm (7-11 μm × 11-18 μm) with an average length-width ratio of 1.7 μm. A nipple-like stieda body continuous with the sporocyst wall is present, but no substieda body was observed. A sporocyst residuum consisting of large equal sized granules was observed either clumped together or diffusely. The sporocysts fill the entire oocysts with little to no open space observed. This is the first report of Isospora species from any of the sampled host species and also the first report from any species of thrush in Costa Rica.     

Genetic analysis and FISH mapping of the Colourless non-ripening locus of tomato

Cnr (Colourless non-ripening) is a dominant pleiotropic ripening mutation of tomato (Lycopersicon esculentum) which has previously been mapped to the proximal region of tomato chromosome 2. We describe the fine mapping of the Cnr locus using both linkage analysis and fluorescence in situ hybridisation (FISH). Restriction fragment length polymorphism (RFLP)-, amplified restriction fragment polymorphism (AFLP)-, and cleaved amplified polymorphic sequence (CAPS)-based markers, linked to the Cnr locus were mapped onto the long arm of chromosome 2. Detailed linkage analysis indicated that the Cnr locus was likely to lie further away from the top of the long arm than previously thought. This was confirmed by FISH, which was applied to tomato pachytene chromosomes in order to gain an insight into the organisation of hetero- and euchromatin and its relationship to the physical and genetic distances in the Cnr region. Three molecular markers linked to Cnr were unambiguously located by FISH to the long arm of chromosome 2 using individual BAC probes containing these single-copy sequences. The physical order of the markers coincided with that established by genetic analysis. The two AFLP markers most-closely linked to the Cnr locus were located in the euchromatic region 2.7-cM apart. The physical distance between these markers was measured on the pachytene spreads and estimated to be approximately 900 kb, suggesting a bp:cM relationship in this region of chromosome 2 of about 330 kb/cM. This is less than half the average value of 750 kb/cM for the tomato genome. The relationship between genetic and physical distances on chromosome 2 is discussed. Received: 11 January 2001 / Accepted: 30 April 2001     

A fine physical map of the rice chromosome 5

A fine physical map of the rice (Oryza sativa spp. Japonica var. Nipponbare) chromosome 5 with bacterial artificial chromosome (BAC) and PI-derived artificial chromosome (PAC) clones was constructed through integration of 280 sequenced BAC/PAC clones and 232 sequence tagged site/expressed sequence tag markers with the use of fingerprinted contig data of the Nipponbare genome. This map consists of five contigs covering 99% of the estimated chromosome size (30.08 Mb). The four physical gaps were estimated at 30 and 20 kb for gaps 1–3 and gap 4, respectively. We have submitted 42.2-Mb sequences with 29.8 Mb of nonoverlapping sequences to public databases. BAC clones corresponding to telomere and centromere regions were confirmed by BAC-fluorescence in situ hybridization (FISH) on a pachytene chromosome. The genetically centromeric region at 54.6 cM was covered by a minimum tiling path spanning 2.1 Mb with no physical gaps. The precise position of the centromere was revealed by using three overlapping BAC/PACs for ~150 kb. In addition, FISH results revealed uneven chromatin condensation around the centromeric region at the pachytene stage. This map is of use for positional cloning and further characterization of the rice functional genomics. Electronic supplementary material Supplementary material is available in the online version of this article at and is accessible for authorized users. Chia-Hsiung Cheng and Mei-Chu Chung have equal contributions.     

FISH physical mapping with barley BAC clones

Fluorescence in situ hybridization (FISH) is a useful technique for physical mapping of genes, markers, and other single- or low-copy sequences. Since clones containing less than 10 kb of single-copy DNA do not reliably produce detectable signals with current FISH techniques in plants, a bacterial artificial chromosome (BAC) partial library of barley was constructed and a FISH protocol for detecting unique sequences in barley BAC clones was developed. The library has a 95 kb average barley insert, representing about 20% of a barley genome. Two BAC clones containing hordein gene sequences were identified and partially characterized. FISH using these two BAC clones as probes showed specific hybridization signals near the end of the short arm of one pair of chromosomes. Restriction digests of these two BAC clones were compared with restriction patterns of genomic DNA; all fragments contained in the BAC clones corresponded to bands present in the genomic DNA, and the two BAC clones were not identical. The barley inserts contained in these two BAC clones were faithful copies of the genomic DNA. FISH with four BAC clones with inserts varying from 20 to 150 kb, showed distinct signals on paired chromatids. Physical mapping of single- or low-copy sequences in BAC clones by FISH will help to correlate the genetic and physical maps. FISH with BAC clones also provide an additional approach for saturating regions of interest with markers and for constructing contigs spanning those regions.