Effect of Tree‐Fall Gaps on Fruit‐Feeding Nymphalid Butterfly Assemblages in a Peruvian Rain Forest

One of the main natural disturbances that affects the structure of rain forests is treefalls, frequently resulting in gaps. Tree‐fall gaps can bring drastic changes in environmental conditions compared with the undisturbed understory. We investigated the effect of tree‐fall gaps on fruit‐feeding butterfly (Nymphalidae) species assemblages in an undisturbed lowland rain forest in southeastern Peru. We used fruit‐baited traps suspended 2 m above ground in 15 tree‐fall gaps ranging in area from 100 to 1000 m² and in adjacent undisturbed understory. Our data support the hypothesis that tree‐fall gap and understory habitats are utilized by different butterfly species assemblages. There were morphological differences between gap and understory species, where the understory species had a larger wing area to thoracic volume. Vegetation structure and composition were important factors affecting the butterfly assemblages. Most of the butterfly species showed an avoidance of vines and a strong association with the presence of trees and shrubs in gaps. There were also differences among gap assemblages that increased with gap size. Some of the species that were associated with gaps have been considered as canopy species. Other gap species in the present study, however, are known to feed on fruits and/or use host plants mainly, or only, occurring in gaps, implicating that the gap assemblage is a mix of canopy species and those unique to gaps. This indicates that, in an undisturbed Amazon forest, tree‐fall gaps may contribute to maintain species diversity by creating a mosaic of specific habitats and resources that favors different butterfly assemblages.     

Short‐Term Responses of Birds to Forest Gaps and Understory: An Assessment of Reduced‐Impact Logging in a Lowland Amazon Forest1

We studied physiognomy‐specific (i.e., gaps vs. understory) responses of birds to low harvest (18.7 m³/ha), reduced‐impact logging by comparing 3500 mist net captures in control and cut blocks of an Amazonian terra firme forest in Brazil at 20–42 mo postharvest. Species richness did not differ significantly between control (92 species) and cut (85) forest based on rarefaction to 1200 captures. Fifty‐six percent of all species were shared between control and cut forest, compared to the 64 percent shared between control blocks. Higher captures of nectarivores and frugivores in cut forest likely occurred as a consequence of postharvest resource blooms. Higher captures of some insectivores in cut as compared to control forest were unexpected, attributable to increased wandering or shifts from association with midstory to understory as a consequence of habitat alteration. Logging influenced capture rates for 21 species, either consistently, or via positive interaction with physiognomy or time (13 species higher in cut forest and 8 species higher in control forest). Cut understory sites had lower diversity (H′) and scaled dominance than understory and gap sites in control forest. Temporal changes in captures may have resulted from successional dynamics in cut forest: two guilds and three species increased in abundance. Increases in abundances of guilds and particular species were more prevalent in control than in cut forest, suggesting that logging displaced birds to control forest. In general, the effects of logging were relatively minor; low harvest rates and reduced‐impact methods may help to retain aspects of avian biodiversity in Amazon forest understories.     

Long‐term Changes in Bird Communities after Wildfires in the Central Brazilian Amazon

We examined long‐term responses of an Amazonian bird assemblage to wildfire disturbance, investigating how understory birds reacted to forest regeneration 1, 3, and 10 years after a widespread fire event. The bird community was sampled along the Arapiuns and Maró river catchments in central Brazilian Amazonia. Sampling took place in 1998, 2000, and 2008 using mist‐nets in eight plots (four burned, four unburned sites). Species richness did not change significantly in unburned sites. In burned sites, however, we found significantly lower richness in 1998, higher richness in 2000, and similar richness in 2008. Multi‐dimensional scaling ordination showed consistent differences in bird communities both within burned sites sampled in different sampling years, and between burned and unburned sites in all years. Of the 30 most abundant species, 12 had not recovered 10 years after the fires, including habitat specialists such as mixed flocks specialists and ant‐followers. Fire‐disturbance favored three species (two hummingbirds and a manakin) in the short term only. All other species were either favored throughout the study (seven species of omnivores and small insectivores) or did not show a clear response (eight species). In burned sites, we also found significantly lower abundance of species sensitive to disturbances and habitat specialists over the entire study period. Although the bird community seems to be recovering in terms of richness, the overall community composition and abundance of some species in post‐burned and unburned sites remain very different, and have not recovered after 10 years of forest regeneration.     

Functional trait trade‐off and species abundance: insights from a multi‐decadal study

Phylogenetically informed trait comparisons across entire communities show promise in advancing community ecology. We use this approach to better understand the composition of a community of winter annual plants with multiple decades of monitoring and detailed morphological, phenological and physiological measurements. Previous research on this system revealed a physiological trade‐off among dominant species that accurately predicts population and community dynamics. Here we expanded our investigation to 51 species, representing 96% of individual plants recorded over 30 years, and analysed trait relationships in the context of species abundance and phylogenetic relationships. We found that the functional‐trait trade‐off scales to the entire community, albeit with diminished strength. It is strongest for dominant species and weakens as progressively rarer species are included. The trade‐off has been consistently expressed over three decades of environmental change despite some turnover in the identity of dominant species.     

Ecological traits influence the phylogenetic structure of bird species co‐occurrences worldwide

The extent to which species’ ecological and phylogenetic relatedness shape their co‐occurrence patterns at large spatial scales remains poorly understood. By quantifying phylogenetic assemblage structure within geographic ranges of >8000 bird species, we show that global co‐occurrence patterns are linked – after accounting for regional effects – to key ecological traits reflecting diet, mobility, body size and climatic preference. We found that co‐occurrences of carnivorous, migratory and cold‐climate species are phylogenetically clustered, whereas nectarivores, herbivores, frugivores and invertebrate eaters tend to be more phylogenetically overdispersed. Preference for open or forested habitats appeared to be independent from the level of phylogenetic clustering. Our results advocate for an extension of the tropical niche conservatism hypothesis to incorporate ecological and life‐history traits beyond the climatic niche. They further offer a novel species‐oriented perspective on how biogeographic and evolutionary legacies interact with ecological traits to shape global patterns of species coexistence in birds.     

Amazon Forest Structure from IKONOS Satellite Data and the Automated Characterization of Forest Canopy Properties

We developed an automated tree crown analysis algorithm using 1-m panchromatic IKONOS satellite images to examine forest canopy structure in the Brazilian Amazon. The algorithm was calibrated on the landscape level with tree geometry and forest stand data at the Fazenda Cauaxi (3.75° S, 48.37° W) in the eastern Amazon, and then compared with forest stand data at Tapajos National Forest (3.08° S, 54.94° W) in the central Amazon. The average remotely sensed crown width (mean ± SE) was 12.7 ± 0.1 m (range: 2.0–34.0 m) and frequency of trees was 76.6 trees/ha at Cauaxi. At Tapajos, remotely sensed crown width was 13.1 ± 0.1 m (range: 2.0–38.0 m) and frequency of trees was 76.4 trees/ha. At both Cauaxi and Tapajos, the remotely sensed average crown widths were within 3 percent of the crown widths derived from field measurements, although crown distributions showed significant differences between field-measured and automated methods. We used the remote sensing algorithm to estimate crown dimensions and forest structural properties in 51 forest stands (1 km²) throughout the Brazilian Amazon. The estimated crown widths, tree diameters (dbh), and stem frequencies differed widely among sites, while estimated biomass was similar among most sites. Sources of observed errors included an inability to detect understory crowns and to separate adjacent, intermingled crowns. Nonetheless, our technique can serve to provide information about structural characteristics of large areas of unsurveyed forest throughout Amazonia.     

Canopy Openness Enhances Diversity of Ant–Plant Interactions in the Brazilian Amazon Rain Forest

In closed‐canopy tropical forest understory, light availability is a significant determinant of habitat diversity because canopy structure is highly variable in most tropical forests. Consequently, variation in canopy cover affects the composition and distribution of plant species via creating variable light environments. Nevertheless, little is known about how variation in canopy openness structures patterns of plant–animal interactions. Because of the great diversity and dominance of ants in tropical environments, we used ant–plant interactions as a focal network to evaluate how variation in canopy cover influences patterns of plant–insect interactions in the Brazilian Amazon rain forest. We observed that small increases in canopy openness are associated with increased diversity of ant–plant interactions in our study area, and this change is independent of plant or ant species richness. Additionally, we found smaller niche overlap for both ants and plants associated with greater canopy openness. We hypothesize that enhanced light availability increases the breadth of ant foraging sources because variation in light availability gives rise to plant resources of different quality and amounts. Moreover, greater light availability promotes vegetative growth in plants, creating ant foraging ‘bridges’ between plants. In sum, our results highlight the importance of environmental heterogeneity as a determinant of ant–plant interaction diversity in tropical environments.     

Inter‐specific Variation in Foliar Nutrients and Resorption of Nine Canopy‐tree Species in a Secondary Neotropical Rain Forest

The influence of environmental gradients on the foliar nutrient economy of forests has been well documented; however, we have little understanding of what drives variability among individuals within a single forest stand, especially tropical forests. We evaluated inter‐ and intra‐specific variation in nutrient resorption, foliar nutrient concentrations and physical leaf traits of nine canopy tree species within a 1‐ha secondary tropical rain forest in northeastern Costa Rica. Both nitrogen (N) and phosphorus (P) resorption efficiency (RE) and proficiency of the nine tree species varied significantly among species, but not within. Both N and P RE were significantly negatively related to leaf specific strength. Green leaf N and P concentrations were strongly negatively related to leaf mass per area, and senesced leaf nutrient concentrations were significantly positively related to green leaf nutrient concentrations. This study reveals a strong influence of physical leaf traits on foliar nutrient and resorption traits of co‐occurring species in a secondary wet tropical forest stand.     

Comparisons of photosynthesis‐related traits of 27 abundant or subordinate bryophyte species in a subalpine old‐growth fir forest

Bryophyte communities can exhibit similar structural and taxonomic diversity as vascular plant communities, just at a smaller scale. Whether the physiological diversity can be similarly diverse, and whether it can explain local abundance patterns is unknown, due to a lack of community‐wide studies of physiological traits. This study re‐analyzed data on photosynthesis‐related traits (including the nitrogen, phosphorus and chlorophyll concentrations, photosynthetic capacities, and photosynthetic nutrient use efficiencies) of 27 bryophyte species in a subalpine old‐growth fir forest on the eastern Tibetan Plateau. We explored differences between taxonomic groups and hypothesized that the most abundant bryophyte species had physiological advantages relative to other subdominant species. Principal component analysis (PCA) was used to summarize the differences among species and trait values of the most abundant and other co‐occurring subdominant species. Species from the Polytrichaceae were separated out on both PCA axes, indicating their high chlorophyll concentrations and photosynthetic capacities (axis 1) and relatively high‐light requirements (axis 2). Mniaceae species also had relatively high photosynthetic capacities, but their light saturation points were low. In contrast, Racomitrium joseph‐hookeri and Lepidozia reptans, two species with a high shoot mass per area, had high‐light requirements and low nutrient and chlorophyll concentrations and photosynthetic capacities. The nutrient concentrations, photosynthetic capacities, and photosynthetic nutrient use efficiencies of the most abundant bryophyte species did not differ from co‐occurring subdominant species. Our research confirms the links between the photosynthesis‐related traits and adaptation strategies of bryophytes. However, species relative abundance was not related to these traits.     

Correlated evolution between climate and suites of traits along a fast–slow continuum in the radiation of Protea

Evolutionary radiations are responsible for much of Earth's diversity, yet the causes of these radiations are often elusive. Determining the relative roles of adaptation and geographic isolation in diversification is vital to understanding the causes of any radiation, and whether a radiation may be labeled as “adaptive” or not. Across many groups of plants, trait–climate relationships suggest that traits are an important indicator of how plants adapt to different climates. In particular, analyses of plant functional traits in global databases suggest that there is an “economics spectrum” along which combinations of functional traits covary along a fast–slow continuum. We examine evolutionary associations among traits and between trait and climate variables on a strongly supported phylogeny in the iconic plant genus Protea to identify correlated evolution of functional traits and the climatic‐niches that species occupy. Results indicate that trait diversification in Protea has climate associations along two axes of variation: correlated evolution of plant size with temperature and leaf investment with rainfall. Evidence suggests that traits and climatic‐niches evolve in similar ways, although some of these associations are inconsistent with global patterns on a broader phylogenetic scale. When combined with previous experimental work suggesting that trait–climate associations are adaptive in Protea, the results presented here suggest that trait diversification in this radiation is adaptive.     

Understanding the Influences of Spatial Patterns on N Availability Within the Brazilian Amazon Forest

Nitrogen variations at different spatial scales and integrated across functional groups were addressed for lowland tropical forests in the Brazilian Amazon as follows: (1) how does N availability vary across the region over different spatial scales (regional × landscape scale); (2) how are these variations in N availability integrated across plant functional groups (legume × non-legume trees). Leaf N, P, and Ca concentrations as well the leaf N isotope ratios (δ¹⁵N) from a large set of legume and non-legume tree species were measured. Legumes had higher foliar N/Ca ratios than non-legumes, consistent with the high energetic costs in plant growth associated with higher foliar P/Ca ratios found in legumes than in non-legumes. At the regional level, foliar δ¹⁵N decreased with increasing rainfall. At the landscape level, N availability was higher in the forests on clayey soils on the plateau than in forests on sandier soils. The isotope as well as the non-isotope data relationships here documented, explain to a large extent the variation in δ¹⁵N signatures across gradients of rainfall and soil. Although at the regional level, the precipitation regime is a major determinant of differences in N availability, at the landscape level, under the same precipitation regime, soil type seems to be a major factor influencing the availability of N in the Brazilian Amazon forest.     

Inter‐annual site fidelity and breeding origins of Gray‐cheeked Thrushes in white sand forests of the Peruvian Amazon

White sand terra firme forests are unusual ecosystems scattered across Amazonia, covering just 3% of the basin. These forests differ from surrounding forests in their scleromorphic vegetation, low nutrient content, and propensity to harbor endemics. We report the capture of 62 Gray‐cheeked Thrushes (Catharus minimus) during a study of the understory avifauna of Amazonian white sand forests near Iquitos, Peru, conducted from 20 June to 8 December 2010–2012. We captured and banded Gray‐cheeked Thrushes in white sand (N = 57) and adjacent weathered clay (N = 5) terra firme forests. Sampling for three consecutive days at 19 different sites each year, the inter‐annual site fidelity rate of Gray‐cheeked Thrushes was 4.8% (N = 3). One bird banded in 2010 was recaptured in 2012. Of the 62 birds, 19.3% (N = 12) were recaptured on subsequent days. All recaptures were in white sand forests. The 19.3% recapture rate of Gray‐cheeked Thrushes from sites re‐sampled no more than 2 d in a given year suggests the presence of settled and perhaps territorial birds. Using rectrices from 12 Gray‐cheeked Thrushes, stable‐hydrogen isotope analyses (δ²H) suggest that the geographic breeding or natal origin of all sampled birds was likely northwestern North America. Our results suggest that Gray‐cheeked Thrushes exhibit site fidelity and may concentrate in white sand forests—an uncommon and scattered ecosystem type in western Amazonia. However, annual tracking of individual Gray‐cheeked Thrushes is needed to fully assess regional patterns of settlement and movement, and the connectivity between breeding and wintering areas.     

Extensive gaps and biases in our knowledge of a well‐known fauna: implications for integrating biological traits into macroecology

Aim Ecologists seeking to describe patterns at ever larger scales require compilations of data on the global abundance and distribution of species. Comparable compilations of biological data are needed to elucidate the mechanisms behind these patterns, but have received far less attention. We assess the availability of biological data across an entire assemblage: the well‐documented demersal marine fauna of the United Kingdom. We also test whether data availability for a species depends on its taxonomic group, maximum body size, the number of times it has been recorded in a global biogeographic database, or its commercial and conservation importance. Location Seas of the United Kingdom. Methods We defined a demersal marine fauna of 973 species from 15 phyla and 40 classes using five extensive surveys around the British Isles. We then quantified the availability of data on eight key biological traits (termed biological knowledge) for each species from online databases. Relationships between biological knowledge and our predictors were tested with generalized linear models. Results Full data on eight fundamental biological traits exist for only 9% (n= 88) of the UK demersal marine fauna, and 20% of species completely lack data. Clear trends in our knowledge exist: fish (median biological knowledge score = six traits) are much better known than invertebrates (one trait). Biological knowledge increases with biogeographic knowledge and (to a lesser extent) with body size, and is greater in species that are commercially exploited or of conservation concern. Main conclusions Our analysis reveals deep ignorance of the basic biology of a well‐studied fauna, highlighting the need for far greater efforts to compile biological trait data. Clear biases in our knowledge, relating to how well sampled or ‘important’ species are suggests that caution is required in extrapolating small subsets of biologically well‐known species to ecosystem‐level studies.     

Avian ecological succession in the Amazon: A long‐term case study following experimental deforestation

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A community‐level test of the leaf‐height‐seed ecology strategy scheme in relation to grazing conditions

Question: Is the assumption of trait independence implied in Westoby's (1998) leaf‐height‐seed (LHS) ecology strategy scheme upheld in a Mediterranean grazing system dominated by annuals? Is the LHS approach applicable at the community level? Location: Northern Israel. Methods: LHS traits (specific leaf area [SLA], plant height and seed mass), and additional leaf traits (leaf dry matter content [LDMC], leaf area, and leaf content of nitrogen [LNC], carbon [LCC], and phosphorus [LPC]), were analyzed at the species and community levels. Treatments included manipulations of grazing intensity (moderate and heavy) and protection from grazing. We focused on species comprising 80% of biomass over all treatments, assuming that these species drive trait relationships and ecosystem processes. Results: At the species level, SLA and seed mass were negatively correlated, and plant height was positively correlated to LCC. SLA, seed mass, and LPC increased with protection from grazing. At the community level, redundancy analysis revealed one principal gradient of variation: SLA, correlated to grazing, versus seed mass and plant height, associated with protection from grazing. We divided community functional parameters into two groups according to grazing response: (1) plant height, seed mass, LDMC, and LCC, associated with protection from grazing, and (2) SLA, associated with grazing. Conclusions: The assumption of independence between LHS traits was not upheld at the species level in this Mediterranean grazing system. At the community level, the LHS approach captured most of the variation associated with protection from grazing, reflecting changes in dominance within the plant community.     

New aspects of grassland recovery in old‐fields revealed by trait‐based analyses of perennial‐crop‐mediated succession

Classical old‐field succession studies focused on vegetation changes after the abandonment of annual croplands or on succession after the elimination of cultivated crops. Perennial‐crop‐mediated succession, where fields are initially covered by perennial crops, reveals alternative aspects of old‐field succession theories. We tested the validity of classical theories of old‐field succession for perennial‐crop‐mediated succession. We formulated the following hypotheses: (1) functional diversity increases with increasing field age; (2) resource acquisition versus conservation trade‐off shifts toward conservation at community level during the succession; (3) the importance of spatial and temporal seed dispersal decreases during the succession; and (4) competitiveness and stress‐tolerance increases and ruderality decreases at community level during the succession. We studied functional diversity, trait distributions and plant strategies in differently aged old‐fields using chronosequence method. We found increasing functional richness and functional divergence, but also unchanged or decreasing functional evenness. We detected a shift from resource acquisition to resource conservation strategy of communities during the succession. The role of spatial and temporal seed dispersal was found to be important not only at the initial but also at latter successional stages. We found an increasing stress‐tolerance and a decreasing ruderality during succession, while the competitiveness remained unchanged at the community level. Despite the markedly different starting conditions, we found that classical and perennial‐crop‐mediated old‐field successions have some similarities regarding the changes of functional diversity, resource acquisition versus conservation trade‐off, and seed dispersal strategies. However, we revealed also the subsequent differences. The competitive character of communities remained stable during the succession; hence, the initial stages of perennial‐crop‐mediated succession can be similar to the middle stages of classical old‐field succession. Moreover, the occupied functional niche space and differentiation were larger in the older stages, but resources were not effectively utilized within this space, suggesting that the stabilization of the vegetation requires more time.