Spatial and temporal genetic structure of Symbiodinium populations within a common reef‐building coral on the Great Barrier Reef

The dinoflagellate photosymbiont Symbiodinium plays a fundamental role in defining the physiological tolerances of coral holobionts, but little is known about the dynamics of these endosymbiotic populations on coral reefs. Sparse data indicate that Symbiodinium populations show limited spatial connectivity; however, no studies have investigated temporal dynamics for in hospite Symbiodinium populations following significant mortality and recruitment events in coral populations. We investigated the combined influences of spatial isolation and disturbance on the population dynamics of the generalist Symbiodinium type C2 (ITS1 rDNA) hosted by the scleractinian coral Acropora millepora in the central Great Barrier Reef. Using eight microsatellite markers, we genotyped Symbiodinium in a total of 401 coral colonies, which were sampled from seven sites across a 12‐year period including during flood plume–induced coral bleaching. Genetic differentiation of Symbiodinium was greatest within sites, explaining 70–86% of the total genetic variation. An additional 9–27% of variation was explained by significant differentiation of populations among sites separated by 0.4–13 km, which is consistent with low levels of dispersal via water movement and historical disturbance regimes. Sampling year accounted for 6–7% of total genetic variation and was related to significant coral mortality following severe bleaching in 1998 and a cyclone in 2006. Only 3% of the total genetic variation was related to coral bleaching status, reflecting generally small (8%) reductions in allelic diversity within bleached corals. This reduction probably reflected a loss of genotypes in hospite during bleaching, although no site‐wide changes in genetic diversity were observed. Combined, our results indicate the importance of disturbance regimes acting together with limited oceanographic transport to determine the genetic composition of Symbiodinium types within reefs.     

Population status and habitat preference of Soemmerring’s gazelle in Alledeghi Wildlife Reserve,Eastern Ethiopia

This study was undertaken to determine the current population size, structure and habitat preference of Soemmerring's gazelle [Nanger soemmerringii (Cretzschmar 1828)] in the Alledeghi Wildlife Reserve, NE Ethiopia. Animals were counted, both during dry and wet seasons, along 12 line transects each in three habitat types (grassland, tree‐scattered grassland and bushland) in 2015/16. Habitat type had nonsignificant effect on mean population density of Soemmerring's gazelle, but wet season mean density was significantly higher than dry season mean density. Estimated weighted mean (±95% CI) population density of the species in the reserve was 1.90 (±0.17) and 5.99 (±0.370) individuals/km² during the dry and wet seasons, respectively. Total population size of the species in the Alledeghi Wildlife Reserve was estimated at 826 ± 77 and 2,562 ± 158 individuals during the dry and wet seasons, respectively. Over half of the total population of Soemmerring's gazelle was represented by adult females during both seasons. Seasonal habitat preference of Soemmerring's gazelle was statistically significant, with greater preference for grassland habitat during wet season and for bushland habitat during dry season. In conclusion, this study has provided valuable data that will be used as a baseline for future population monitoring.     

Importance of Seed and Microsite Limitation: Native Wildflower Establishment in Non‐native Pasture

Barriers to establishing native plant communities on former pasture include dominance by a single planted species, hydrologic and edaphic alteration, and native species propagule limitation. Establishment may be dispersal‐limited (propagules do not arrive at the site), microsite‐limited (areas suitable for seedling emergence and survival do not exist), or both. Successful restoration strategies hinge on identifying and addressing critical limitations. We examined seed and microsite limitation to establishment of a native wildflower (Coreopsis lanceolata ) in a former pasture dominated by Paspalum notatum (bahiagrass). We determined the relative and interactive effects of microsite (irrigation and disturbance) and seed limitation on C. lanceolata establishment. We tested (1) irrigation (none, pre‐seeding, and pre‐ and post‐seeding), (2) disturbance (none, sethoxydim, glyphosate, and topsoil removal), and (3) C. lanceolata seeding rate (three seeding densities). Applying glyphosate before seeding increased C. lanceolata establishment compared to other disturbance treatments. Ultimately, C. lanceolata establishment was not affected by irrigation. Coreopsis lanceolata establishment was limited when seeded at 100 live seeds/m² but not at 600 or 1100 live seeds/m². Seed and microsite availability interactively affected C. lanceolata establishment, in that microsite limitation was biologically relevant only when a minimum number of seeds were present. In practice, both seed and microsite requirements must be met for successful establishment, and increasing the availability of seeds or microsites does not compensate for limitations of the other. Here, it is the relative importance of seed and microsite limitations that drives plant establishment; these limitations do not represent a simple dichotomy.     

Fine‐scale genetic structure and flowering output of the seagrass Enhalus acoroides undergoing disturbance

Seagrass are under great stress in the tropical coast of Asia, where Enhalus acoroides is frequently the dominant species with a large food web. Here, we investigate the question of the fine‐scale genetic structure of this ecologically important foundation species, subject to severe anthropogenic disturbance in China. The genetic structure will illuminate potential mechanisms for population dynamics and sustainability, which are critical for preservation of biodiversity and for decision‐making in management and restoration. We evaluated the fine‐scale spatial genetic structure (SGS) and flowering output of E. acoroides, and indirectly estimated the relative importance of sexual versus asexual reproduction for population persistence using spatial autocorrelation analysis. Results reveal high clonal diversity for this species, as predicted from its high sexual reproduction output. The stronger Sp statistic at the ramet‐level compared with genet‐level indicates that clonality increases the SGS pattern for E. acoroides. Significant SGS at the genet‐level may be explained by the aggregated dispersal of seed/pollen cohorts. The estimated gene dispersal variance suggests that dispersal mediated by sexual reproduction is more important than clonal growth in this study area. The ongoing anthropogenic disturbance will negatively affect the mating pattern and the SGS patterns in the future due to massive death of shoots, and less frequency of sexual reproduction.     

Recovery of ponderosa pine ecosystem carbon and water fluxes from thinning and stand‐replacing fire

Carbon uptake by forests is a major sink in the global carbon cycle, helping buffer the rising concentration of CO₂ in the atmosphere, yet the potential for future carbon uptake by forests is uncertain. Climate warming and drought can reduce forest carbon uptake by reducing photosynthesis, increasing respiration, and by increasing the frequency and intensity of wildfires, leading to large releases of stored carbon. Five years of eddy covariance measurements in a ponderosa pine (Pinus ponderosa)‐dominated ecosystem in northern Arizona showed that an intense wildfire that converted forest into sparse grassland shifted site carbon balance from sink to source for at least 15 years after burning. In contrast, recovery of carbon sink strength after thinning, a management practice used to reduce the likelihood of intense wildfires, was rapid. Comparisons between an undisturbed‐control site and an experimentally thinned site showed that thinning reduced carbon sink strength only for the first two posttreatment years. In the third and fourth posttreatment years, annual carbon sink strength of the thinned site was higher than the undisturbed site because thinning reduced aridity and drought limitation to carbon uptake. As a result, annual maximum gross primary production occurred when temperature was 3 °C higher at the thinned site compared with the undisturbed site. The severe fire consistently reduced annual evapotranspiration (range of 12–30%), whereas effects of thinning were smaller and transient, and could not be detected in the fourth year after thinning. Our results show large and persistent effects of intense fire and minor and short‐lived effects of thinning on southwestern ponderosa pine ecosystem carbon and water exchanges.     

The effect of close approaches for tagging activities by small research vessels on the behavior of humpback whales (Megaptera novaeangliae)

Small research vessels are often used as platforms for tagging activities to collect behavioral data on cetaceans and they have the potential to disturb that group or individual. If this disturbance is ignored, results and conclusions produced by that study could be inaccurate. Here land‐based behavioral data of migrating humpback whales (Megaptera novaeangliae) (n = 29) were used to determine the effect of close approaches for tagging by research vessels on their diving, movement and surface behaviors. Groups of whales were tagged, using digital recording tags, by small research vessels, as part of a behavioral response study. In groups that were approached for tagging, temporary changes in movement behaviors during close approaches were found, with subsequent recovery to “pre‐approach” levels. In female‐calf groups more long‐term changes in travel speed were found. Results suggest that, although close approaches for tagging by small vessels may cause behavioral changes in humpback whales, this change may be small and temporary. However, in female‐calf groups, the behavioral change may be greater and longer lasting. This study shows that when using small vessels for behavioral research, disturbance, and recovery should be measured to ensure integrity of data used for other analyses.     

Pollination of lark daisy on roadsides declines as traffic speed increases along an Amazonian highway

Ecological disturbances caused by roadways have previously been reported, but traffic speed has not been addressed. We investigate effects of traffic speed on pollination of Centratherum punctatum (Asteraceae) along an Amazonian highway roadside. We hypothesised that frequency of flower visitors, duration of single visits and pollen deposition on stigmas will vary negatively as traffic speed increases. After measuring vehicle velocities, we classified three road sections as low‐, mid‐ and high‐velocity traffic. The main pollinator bee, Augochlora sp., visited C. punctatum inflorescences with decreasing frequency from low‐ to high‐velocity roadside sections, whereas the nectar thief butterflies did the opposite. Duration of single visits by bees and butterflies was shorter, and arrival of pollen on C. punctatum stigmas was lower, in high‐ than in low‐velocity roadside. Air turbulence due to passing vehicles increases with velocity and disturbed the flower visitors. Overall, results support that traffic velocity negatively affects foraging of flower visitors and the pollination of C. punctatum on roadsides.     

Local trampling disturbance effects on alpine plant populations and communities: Negative implications for climate change vulnerability

Global change is modifying species communities from local to landscape scales, with alterations in the abiotic and biotic determinants of geographic range limits causing species range shifts along both latitudinal and elevational gradients. An important but often overlooked component of global change is the effect of anthropogenic disturbance, and how it interacts with the effects of climate to affect both species and communities, as well as interspecies interactions, such as facilitation and competition. We examined the effects of frequent human trampling disturbances on alpine plant communities in Switzerland, focusing on the elevational range of the widely distributed cushion plant Silene acaulis and the interactions of this facilitator species with other plants. Examining size distributions and densities, we found that disturbance appears to favor individual Silene growth at middle elevations. However, it has negative effects at the population level, as evidenced by a reduction in population density and reproductive indices. Disturbance synergistically interacts with the effects of elevation to reduce species richness at low and high elevations, an effect not mitigated by Silene. In fact, we find predominantly competitive interactions, both by Silene on its hosted and neighboring species and by neighboring (but not hosted) species on Silene. Our results indicate that disturbance can be beneficial for Silene individual performance, potentially through changes in its neighboring species community. However, possible reduced recruitment in disturbed areas could eventually lead to population declines. While other studies have shown that light to moderate disturbances can maintain high species diversity, our results emphasize that heavier disturbance reduces species richness, diversity, as well as percent cover, and adversely affects cushion plants and that these effects are not substantially reduced by plant–plant interactions. Heavily disturbed alpine systems could therefore be at greater risk for upward encroachment of lower elevation species in a warming world.     

Secondary compounds from exotic tree plantations change female mating preferences in the palmate newt (Lissotriton helveticus)

Selection can favour phenotypic plasticity in mate choice in response to environmental factors that alter the costs and benefits of being choosy, or of choosing specific mates. Human‐induced environmental change could alter sexual selection by affecting the costs of mate choice, or by impairing the ability of individuals to identify preferred mates. For example, variation in mate choice could be driven by environmentally induced differences in body condition (e.g. health) that change the cost of choosiness, or by environmental effects on the ability to detect or discriminate sexual signals. We teased apart these possibilities experimentally, by comparing female mate choice in the palmate newt Lissotriton helveticus between environments that mimic water from either native oak forests or exotic eucalypt plantations. In laboratory two‐choice mate trials in clean water, females with prolonged exposure (21 days) to waterborne chemicals leached from eucalypt leaves did not preferentially associate with the male with a stronger immune response, but females exposed to water with chemicals from oak leaves did. In contrast, female choice was unaffected by the immediate presence or absence of eucalypt leachates during mate choice (using only females previously held in oak‐treated water). The habitat‐related change in female choice we observed is likely to be driven by effects of eucalypt leachates on female physiology, rather than immediate inhibition of pheromone transmission or blocking of pheromone reception.     

Natural expansion versus translocation in a previously human‐persecuted bird of prey

Many threatened species in Europe have been expanding their distributions during recent decades owing to protection measures that overcome historical human activity that has limited their distributions. Range expansion has come about via two processes, natural expansion from existing range and reintroductions to new ranges. Reintroductions may prove to be a better way to establish populations because individuals are less subject to competitive relationships lowering breeding success than individuals expanding from existing populations. Whether this is true, however, remains uncertain. We compared success of breeding pairs of an expanding and a reintroduced population of spanish imperial eagles monitored for over 15 years in the south of Spain. We found significant differences in productivity between breeding pairs of each population. Newly established territories in reintroduction areas were almost three times more productive than new territories established as individuals expanded out from an existing population. We conclude that among these eagle populations reintroduced to new areas may fare as well or better than individuals expanding out form existing populations.     

Diversity and resilience of the wood‐feeding higher termite Mironasutitermes shangchengensis gut microbiota in response to temporal and diet variations

Termites are considered among the most efficient bioreactors, with high capacities for lignocellulose degradation and utilization. Recently, several studies have characterized the gut microbiota of diverse termites. However, the temporal dynamics of the gut microbiota within a given termite with dietary diversity are poorly understood. Here, we employed 16S rDNA barcoded pyrosequencing analysis to investigate temporal changes in bacterial diversity and richness of the gut microbiota of wood‐feeding higher termite Mironasutitermes shangchengensis under three lignocellulose content‐based diets that feature wood, corn stalks, and filter paper. Compositions of the predominant termite gut residents were largely constant among the gut microbiomes under different diets, but each diet caused specific changes in the bacterial composition over time. Notably, microbial communities exhibited an unexpectedly strong resilience during continuous feeding on both corn stalks and filter paper. Members of five bacterial phyla, that is, Spirochaetes, Firmicutes, Actinobacteria, Tenericutes, and Acidobacteria, were strongly associated with the resilience. These findings provide insights into the stability of the gut microbiota in higher termites and have important implications for the future design of robust bioreactors for lignocellulose degradation and utilization.     

Using flight initiation distance to evaluate responses of colonial‐nesting Great Egrets to the approach of an unmanned aerial vehicle

Remote‐controlled, unmanned aerial vehicles (UAVs) can be used to collect information in difficult‐to‐access places while potentially minimizing human disturbance. These devices have been widely used in a variety of ecological and behavioral studies in recent years, but additional study is needed to assess the magnitude of disturbance they cause to birds. We examined the responses of Great Egrets (Ardea alba) to a UAV in a breeding colony in Louisiana in 2016 where isolated patches of common reed (Phragmites australis) were used as nest sites by multiple breeding pairs. We examined the flush responses and flight initiation distances (FIDs) of nesting adults to the direct vertical approach of a UAV. Incubating adults were more likely to flush from nests and flushed at greater distances when approached by a UAV than adults with nestlings, suggesting that adult assessment of risk was based on the greater reproductive value of nestlings. We observed fewer flush responses and calculated lower set‐back distances using a UAV to approach nesting Great Egrets (~50 m) than set‐back distances calculated using traditional methods of approach (e.g., walking or boating; 87–251 m). We found that FIDs were shorter when more adults were present in nesting patches, suggesting that the perception of predation risk may be based in part on the reactions of other birds. Our results suggest that UAVs may be a useful alternative for monitoring colonial‐nesting waterbirds. However, our analyses were based exclusively on behavioral observations. Additional studies of the physiological responses of birds to the approach of UAVs are needed to better understand the stress responses of birds to these devices.     

Effect of volcanic ash deposition on length and radial growths of a deciduous montane tree (Nothofagus pumilio)

Extreme environmental events such as volcanic eruptions can trigger plant responses that largely exceed those recorded for moderate‐intensity disturbances. We assessed the effects of the June 2011 eruption of the Puyehue – Cordón Caulle volcano on the length and radial growths of juvenile Nothofagus pumilio trees at two sites located 20 (with >40 cm ash accretion) and 75 (without ash) km from the volcano. Variations in length and radial growth were evaluated for the periods 1999–2013 and 1993–2013 respectively; pre‐ and post‐eruption growth rates were computed. The length growth of the N. pumilio trees located close to the volcano increased significantly after the eruption: shoot extensions during the growing season after the eruption were, on average, two to three times longer than average according to ontogenetic growth trends. Variations in radial growth after the eruption were comparatively less noticeable than those in length growth. No significant effects of the eruption were observed in those trees located 75 km from the volcano. In order to explain the exceptionally positive response of N. pumilio's length growth to the volcanic eruption, three non‐exclusive explanations were proposed: (i) thick ash layers increase water retention in the soil; (ii) volcanic ash facilitates the access of plants to nutrients; and (iii) volcanic ashes decrease herbivory and competition. The comparatively lower sensitivity of radial growth to this extreme volcanic event is also noteworthy. These findings highlight the need to further examine how large‐scale volcanic events influence structure and/or functioning of ecosystem in the Patagonian forest.     

Propagule pressure and land cover changes as main drivers of red and roe deer expansion in mainland Portugal

Aim

The management of the rapid expansion of wild ungulate populations is a challenging task and a societal priority. Using a progressive database of red (Cervus elaphus) and roe (Capreolus capreolus) deer colonization over the last three decades, we estimate the range expansion rates and the underlying mechanisms involved in the expansion patterns of red and roe deer populations at the south‐western edge of its European distribution.

Location

Mainland Portugal.

Methods

We compiled and grouped historical red and roe deer distribution data in three time periods (1981–1990, 1991–2000 and 2001–2010). We used generalized linear mixed models to evaluate how biotic and abiotic drivers determine the expansion patterns of red and roe deer.

Results

We reported a significant expansion of red and roe deer populations during the last three decades. The significant interaction between propagule pressure and land cover suggests that the effects of propagule pressure vary along environmental gradients. We found that the influence of livestock on red and roe deer expansion is idiosyncratic. Contrary to red deer, roe deer expansion was also influenced by climatic conditions. We did not detect any significant effect of human factors on the red and roe deer expansion.

Main conclusions

The synergistic effects between variables should be taken into account when studying the patterns of species expansion. Our study emphasize that policy makers should consider the spatial, temporal, ecological and societal nuances of species expansion in order to prioritize management measures and to allocate management budgets. Although concerted strategies to curtail species spread should mitigate red and roe deer economic and ecological impacts, these effects can be neutralized by a continuous rural exodus and the consequent forest and shrub encroachment.

     

Spruce beetle outbreak was not driven by drought stress: Evidence from a tree‐ring iso‐demographic approach indicates temperatures were more important

Climate change has amplified eruptive bark beetle outbreaks over recent decades, including spruce beetle (Dendroctonus rufipennis). However, for projecting future bark beetle dynamics there is a critical lack of evidence to differentiate how outbreaks have been promoted by direct effects of warmer temperatures on beetle life cycles versus indirect effects of drought on host susceptibility. To diagnose whether drought‐induced host‐weakening was important to beetle attack success we used an iso‐demographic approach in Engelmann spruce (Picea engelmannii) forests that experienced widespread mortality caused by spruce beetle outbreaks in the 1990s, during a prolonged drought across the central and southern Rocky Mountain region. We determined tree death date demography during this outbreak to differentiate early‐ and late‐dying trees in stands distributed across a landscape within this larger regional mortality event. To directly test for a role of drought stress during outbreak initiation we determined whether early‐dying trees had greater sensitivity of tree‐ring carbon isotope discrimination (?¹³C) to drought compared to late‐dying trees. Rather, evidence indicated the abundance and size of host trees may have modified ?¹³C responses to drought. ?¹³C sensitivity to drought did not differ among early‐ versus late‐dying trees, which runs contrary to previously proposed links between spruce beetle outbreaks and drought. Overall, our results provide strong support for the view that irruptive spruce beetle outbreaks across North America have primarily been driven by warming‐amplified beetle life cycles whereas drought‐weakened host defenses appear to have been a distant secondary driver of these major disturbance events.     

Specialization in habitat use by coral reef damselfishes and their susceptibility to habitat loss

While it is generally assumed that specialist species are more vulnerable to disturbance compared with generalist counterparts, this has rarely been tested in coastal marine ecosystems, which are increasingly subject to a wide range of natural and anthropogenic disturbances. Habitat specialists are expected to be more vulnerable to habitat loss because habitat availability exerts a greater limitation on population size, but it is also possible that specialist species may escape effects of disturbance if they use habitats that are generally resilient to disturbance. This study quantified specificity in use of different coral species by six coral‐dwelling damselfishes (Chromis viridis, C. atripectoralis, Dascyllus aruanus, D. reticulatus, Pomacentrus moluccensis, and P. amboinensis) and related habitat specialization to proportional declines in their abundance following habitat degradation caused by outbreaks of the coral eating starfish, Acanthaster planci. The coral species preferred by most coral‐dwelling damselfishes (e.g., Pocillopora damicornis) were frequently consumed by coral eating crown‐of‐thorns starfish, such that highly specialized damselfishes were disproportionately affected by coral depletion, despite using a narrower range of different coral species. Vulnerability of damselfishes to this disturbance was strongly correlated with both their reliance on corals and their degree of habitat specialization. Ongoing disturbances to coral reef ecosystems are expected, therefore, to lead to fundamental shifts in the community structure of fish communities where generalists are favored over highly specialist species.