Fire mediated patterns of population densities in mountain big sagebrush bird communities

We employed a chronosequence approach to evaluate patterns of bird abundance in relation to post-fire vegetation recovery in mountain big sagebrush (Artemisia tridentata vaseyana). We estimated population density for 12 species of birds within the perimeters of 4 fires that had undergone 8–20 years of vegetation recovery and on adjacent unburned areas in the northwestern Great Basin, USA. Six species showed negative responses to fire persisting up to 20 years. Two species showed positive responses with effects persisting for <20 years. Understory vegetation was similar between burned and unburned areas irrespective of recovery time, and shrub canopy cover was similar between burned and unburned sites after 20 years of recovery. Persistent reductions in bird densities lead us to conclude that shrub canopy cover alone is not a sufficient metric for predicting recovery of songbird abundances following disturbance in mountain big sagebrush. © 2013 The Wildlife Society.     

Balancing bioenergy and biosecurity policies: estimating current and future climate suitability patterns for a bioenergy crop

In an apparent paradox, bioenergy crops offer potential benefits to a world adjusting to the challenges of climate change and declining fossil fuel stocks, as well as potential ecological and economic threats resulting from biological invasions. In considering this paradox it is important to understand that benefits and threats may not always be apparent in equal measure throughout the potential range of each candidate biofuel species. In some environments, a species could potentially produce valuable biological materials without posing a significant invasion threat. In this study, we develop a bioclimatic niche model for a candidate biofuel crop, Millettia pinnata, and apply the model to different climatic and irrigation scenarios to estimate the current and future patterns of climate suitability for its growth and naturalization. We use Australia as a case study for interpreting the niche model in terms that may be informative for both biofuels proponents and biosecurity regulators to plan management programmes that reflect the invasive potential in different areas. The model suggests that suitable growing conditions for M. pinnata in Australia are naturally restricted to the moist and semimoist tropics. Irrigation can extend the suitable growing conditions more widely throughout the tropics, and into more arid regions. Under future climate scenarios, suitable growing conditions for M. pinnata under natural rainfall contract towards the east coast, and extend southward into the subtropics. With irrigation, M. pinnata appears to have the potential in the future to naturalize across much of Australia. The bioclimatic modelling method demonstrated here is comparatively quick and easy, and can produce a rich array of data products to inform the interests of both bioenergy proponents and biosecurity regulators. We show how this modelling can support the development of spatially explicit biosecurity policies designed to manage invasion risks in a manner that balances bioenergy and biosecurity concerns.     

Connecting genomic patterns of local adaptation and niche suitability in teosintes

The central abundance hypothesis predicts that local adaptation is a function of the distance to the centre of a species’ geographic range. To test this hypothesis, we gathered genomic diversity data from 49 populations, 646 individuals and 33,464 SNPs of two wild relatives of maize, the teosintes Zea mays ssp. parviglumis and Zea. mays. ssp. mexicana. We examined the association between the distance to their climatic and geographic centroids and the enrichment of SNPs bearing signals of adaptation. We identified candidate adaptive SNPs in each population by combining neutrality tests and cline analyses. By applying linear regression models, we found that the number of candidate SNPs is positively associated with niche suitability, while genetic diversity is reduced at the limits of the geographic distribution. Our results suggest that overall, populations located at the limit of the species’ niches are adapting locally. We argue that local adaptation to this limit could initiate ecological speciation processes and facilitate adaptation to global change.     

Modelling expected trout ranges under current and future water temperature regimes in the Eastern Cape,South Africa

Different values have resulted in conflicts between anglers and conservation lobbies in the management of trout in South Africa. Key to the conflict is the demarcation of boundaries to areas in which brown trout Salmo trutta and rainbow trout Oncorhynchus mykiss currently occur, or are likely to establish following stocking for angling. To provide a longer-term perspective on these areas, we developed models to link salmonid biological thermal thresholds to elevation. These, when applied spatially using a digital elevation model with a probability of occurrence model, provided the basis for estimating potentially available thermal habitat for these two cold water species. Here, we acknowledge that other variables (stocking history; river connectivity) also play a role in understanding trout distributions. Using a simple scenario of an increase in mean daily water temperatures of 2 °C, we demonstrated that both brown and rainbow trout are likely to exhibit considerable range reductions in the future. Because it is possible that these range restrictions will result in an increasing desire to introduce trout into areas above their current distribution limits for the maintenance of angling opportunities, conservation managers should prioritise these areas, with management interventions seeking to understand what will help to limit introductions.     

未来气候变化对云南烤烟种植气候适宜性的影响

云南烤烟种植的气候适宜性分布将受到气候变化的深刻影响.根据云南烤烟种植气候适宜性的3个决定因子(7月平均气温、7—8月日照时数、4—9月降水量),利用1981—2060年的气候模拟数据及1986—2005年的气象台站实测数据,分析了1986—2005年及RCP 4.5和RCP8.5气候情景下2021—2040年、2041—2060年云南烤烟种植气候适宜性分布的变化.结果表明: 未来气候情景下,云南烤烟种植气候适宜分布呈现北抬东扩的趋势,未来云南烤烟可种植区域将呈逐渐增加的趋势,且2041—2060年增幅大于2021—2040年、RCP8.5情景的增幅大于RCP4.5情景,其中,烤烟的最适宜区域、次适宜区域增幅均较大,适宜区域则变化不大.未来云南中北部烟区的昆明、曲靖、大理、楚雄、丽江最适宜区面积与可种植面积增幅较大,文山、红河、普洱、西双版纳等南部烟区最适宜区面积与可种植面积减幅较大.     

未来气候变化对中国天然橡胶种植气候适宜区的影响

全球气候变暖将严重影响中国天然橡胶种植的气候适宜区分布.根据影响中国橡胶种植的5个主导气候因子,即最冷月平均温度、极端最低温度平均值、月平均温度≥18 ℃月份、年平均气温和年平均降水量,基于最大熵MaxEnt模型,利用1981—2010年全国气候数据和RCP4.5情景的气候预估,分析了1981—2010、2041—2060、2061—2080年中国天然橡胶种植的气候适宜区变化.结果表明： 随着未来气候变化,2041—2060和2061—2080年中国天然橡胶的种植气候适宜区范围总体呈北扩趋势,对橡胶树北移有利. 2041—2060、2061—2080年中国天然橡胶气候适宜区总面积较1981—2010年呈增长趋势,高适宜区和中适宜区的面积均有增加趋势,而低适宜区面积呈减少趋势.局部区域气候适宜性发生明显变化：云南的橡胶主产区的适宜区总面积减少,其中,云南省的景洪、勐腊等地将由现在的高适宜区转变为中适宜区,海南岛及广东雷州半岛的橡胶种植高适宜区面积明显增加,在台湾岛出现了新的橡胶种植低适宜区等.     

Predicting spatial patterns of soil bacteria under current and future environmental conditions

Soil bacteria are largely missing from future biodiversity assessments hindering comprehensive forecasts of ecosystem changes. Soil bacterial communities are expected to be more strongly driven by pH and less by other edaphic and climatic factors. Thus, alkalinisation or acidification along with climate change may influence soil bacteria, with subsequent influences for example on nutrient cycling and vegetation. Future forecasts of soil bacteria are therefore needed. We applied species distribution modelling (SDM) to quantify the roles of environmental factors in governing spatial abundance distribution of soil bacterial OTUs and to predict how future changes in these factors may change bacterial communities in a temperate mountain area. Models indicated that factors related to soil (especially pH), climate and/or topography explain and predict part of the abundance distribution of most OTUs. This supports the expectations that microorganisms have specific environmental requirements (i.e., niches/envelopes) and that they should accordingly respond to environmental changes. Our predictions indicate a stronger role of pH over other predictors (e.g. climate) in governing distributions of bacteria, yet the predicted future changes in bacteria communities are smaller than their current variation across space. The extent of bacterial community change predictions varies as a function of elevation, but in general, deviations from neutral soil pH are expected to decrease abundances and diversity of bacteria. Our findings highlight the need to account for edaphic changes, along with climate changes, in future forecasts of soil bacteria.Subject terms: Microbial ecology, Metagenomics, Climate-change ecology     

Using population viability analysis,genomics, and habitat suitability to forecast future population patterns of Little Owl Athene noctua across Europe

The agricultural scene has changed over the past decades, resulting in a declining population trend in many species. It is therefore important to determine the factors that the individual species depend on in order to understand their decline. The landscape changes have also resulted in habitat fragmentation, turning once continuous populations into metapopulations. It is thus increasingly important to estimate both the number of individuals it takes to create a genetically viable population and the population trend. Here, population viability analysis and habitat suitability modeling were used to estimate population viability and future prospects across Europe of the Little Owl Athene noctua, a widespread species associated with agricultural landscapes. The results show a high risk of population declines over the coming 100 years, especially toward the north of Europe, whereas populations toward the southeastern part of Europe have a greater probability of persistence. In order to be considered genetically viable, individual populations must count 1,000–30,000 individuals. As Little Owl populations of several countries count <30,000, and many isolated populations in northern Europe count <1,000 individuals, management actions resulting in exchange of individuals between populations or even countries are probably necessary to prevent losing <1% genetic diversity over a 100‐year period. At a continental scale, a habitat suitability analysis suggested Little Owl to be affected positively by increasing temperatures and urban areas, whereas an increased tree cover, an increasing annual rainfall, grassland, and sparsely vegetated areas affect the presence of the owl negatively. However, the low predictive power of the habitat suitability model suggests that habitat suitability might be better explained at a smaller scale.     

Climate,competition and connectivity affect future migration and ranges of European trees

Aim Species ranges have adapted during the Holocene to altering climate conditions, but it remains unclear if species will be able to keep pace with recent and future climate change. The goal of our study is to assess the influence of changing macroclimate, competition and habitat connectivity on the migration rates of 14 tree species. We also compare the projections of range shifts from species distribution models (SDMs) that incorporate realistic migration rates with classical models that assume no or unlimited migration. Location Europe. Methods We calibrated SDMs with species abundance data from 5768 forest plots from ICP Forest Level 1 in relation to climate, topography, soil and land‐use data to predict current and future tree distributions. To predict future species ranges from these models, we applied three migration scenarios: no migration, unlimited migration and realistic migration. The migration rates for the SDMs incorporating realistic migration were estimated according to macroclimate, inter‐specific competition and habitat connectivity from simulation experiments with a spatially explicit process model (TreeMig). From these relationships, we then developed a migration cost surface to constrain the predicted distributions of the SDMs. Results The distributions of early‐successional species during the 21st century predicted by SDMs that incorporate realistic migration matched quite well with the unlimited migration assumption (mean migration rate over Europe for A1fi/GRAS climate and land‐use change scenario 156.7 ± 79.1 m year^?1 and for B1/SEDG 164.3 ± 84.2 m year^?1). The predicted distributions of mid‐ to late‐successional species matched better with the no migration assumption (A1fi/GRAS, 15.2 ± 24.5 m year^?1 and B1/SEDG, 16.0 ± 25.6 m year^?1). Inter‐specific competition, which is higher under favourable growing conditions, reduced range shift velocity more than did adverse macroclimatic conditions (i.e. very cold or dry climate). Habitat fragmentation also led to considerable time lags in range shifts. Main conclusions Migration rates depend on species traits, competition, spatial habitat configuration and climatic conditions. As a result, re‐adjustments of species ranges to climate and land‐use change are complex and very individualistic, yet still quite predictable. Early‐successional species track climate change almost instantaneously while mid‐ to late‐ successional species were predicted to migrate very slowly.     

Mechanistic variables can enhance predictive models of endotherm distributions: the American pika under current,past, and future climates

How climate constrains species’ distributions through time and space is an important question in the context of conservation planning for climate change. Despite increasing awareness of the need to incorporate mechanism into species distribution models (SDMs), mechanistic modeling of endotherm distributions remains limited in this literature. Using the American pika (Ochotona princeps) as an example, we present a framework whereby mechanism can be incorporated into endotherm SDMs. Pika distribution has repeatedly been found to be constrained by warm temperatures, so we used Niche Mapper, a mechanistic heat‐balance model, to convert macroclimate data to pika‐specific surface activity time in summer across the western United States. We then explored the difference between using a macroclimate predictor (summer temperature) and using a mechanistic predictor (predicted surface activity time) in SDMs. Both approaches accurately predicted pika presences in current and past climate regimes. However, the activity models predicted 8–19% less habitat loss in response to annual temperature increases of ~3–5 °C predicted in the region by 2070, suggesting that pikas may be able to buffer some climate change effects through behavioral thermoregulation that can be captured by mechanistic modeling. Incorporating mechanism added value to the modeling by providing increased confidence in areas where different modeling approaches agreed and providing a range of outcomes in areas of disagreement. It also provided a more proximate variable relating animal distribution to climate, allowing investigations into how unique habitat characteristics and intraspecific phenotypic variation may allow pikas to exist in areas outside those predicted by generic SDMs. Only a small number of easily obtainable data are required to parameterize this mechanistic model for any endotherm, and its use can improve SDM predictions by explicitly modeling a widely applicable direct physiological effect: climate‐imposed restrictions on activity. This more complete understanding is necessary to inform climate adaptation actions, management strategies, and conservation plans.     

Effects of local and landscape-scale habitat variables on abundance and reproductive success of wetland birds

Both local and landscape-scale habitat variables influence the abundance of wetland breeding birds. Few studies, however, simultaneously assess the effects of habitat variables at multiple spatial scales or consider effects on reproductive success. Therefore, we examined the effects of wetland and landscape-scale habitat variables on the abundance of nine breeding bird species and the effects of nest, wetland, or landscape-scale habitat variables on the nest success, clutch size, or number of fledglings of four species at 15 cattail (Typha sp.)-dominated wetlands in an agricultural region around Peterborough, Ontario, Canada. The abundance of Least Bittern (Ixobrychus exilis), Common Moorhen (Gallinula chloropus), and Marsh Wren (Cistothorus palustris) increased as wetland water depth increased; the abundance of Common Moorhen and Marsh Wren increased as wetland size increased; and the abundance of Marsh Wren increased as the amount of wetland in the surrounding landscape increased. Red-winged Blackbird (Agelaius phoeniceus) nest success decreased as nest cover increased. Clutch sizes were uninfluenced by the habitat variables that we considered. The number of Red-winged Blackbird fledglings per successful nest increased as wetland size increased and as the amount of wetland in the surrounding landscape increased. We speculate that food limitation in small wetlands may be responsible for the pattern in Red-winged Blackbird fledging success. The abundance and nest success of Virginia Rail (Rallus limicola) and Sora (Porzana carolina) were uninfluenced by the habitat variables we considered. Future research should consider mate attraction and productivity in relation to local and landscape-scale habitat variables for these and other secretive species. Our study suggests that wetland conservation will be most effective if it considers habitat variables at multiple spatial scales.     

Regional scale patterns of fine root lifespan and turnover under current and future climate

Fine root dynamics control a dominant flux of carbon from plants and into soils and mediate potential uptake and cycling of nutrients and water in terrestrial ecosystems. Understanding of these patterns is needed to accurately describe critical processes like productivity and carbon storage from ecosystem to global scales. However, limited observations of root dynamics make it difficult to define and predict patterns of root dynamics across broad spatial scales. Here, we combine species‐specific estimates of fine root dynamics with a model that predicts current distribution and future suitable habitat of temperate tree species across the eastern United States (US). Estimates of fine root lifespan and turnover are based on empirical observations and relationships with fine root and whole‐plant traits and apply explicitly to the fine root pool that is relatively short‐lived and most active in nutrient and water uptake. Results from the combined model identified patterns of faster root turnover rates in the North Central US and slower turnover rates in the Southeastern US. Portions of Minnesota, Ohio, and Pennsylvania were also predicted to experience >10% increases in root turnover rates given potential shifts in tree species composition under future climate scenarios while root turnover rates in other portions of the eastern US were predicted to decrease. Despite potential regional changes, the average estimates of root lifespan and turnover for the entire study area remained relatively stable between the current and future climate scenarios. Our combined model provides the first empirically based, spatially explicit, and spatially extensive estimates of fine root lifespan and turnover and is a potentially powerful tool allowing researchers to identify reasonable approximations of forest fine root turnover in areas where no direct observations are available. Future efforts should focus on reducing uncertainty in estimates of root dynamics by better understanding how climate and soil factors drive variability in root dynamics of different species.     

Climate and soil texture influence patterns of forb species richness and composition in big sagebrush plant communities across their spatial extent in the western U.S.

Big sagebrush (Artemisia tridentata Nutt.) plant communities are widespread in western North America and, similar to all shrub steppe ecosystems worldwide, are composed of a shrub overstory layer and a forb and graminoid understory layer. Forbs account for the majority of plant species diversity in big sagebrush plant communities and are important for ecosystem function. Few studies have explored geographic patterns of forb species richness and composition and their relationships with environmental variables in these communities. Our objectives were to examine the fine and broad-scale spatial patterns in forb species richness and composition and the influence of environmental variables. We sampled forb species richness and composition along transects at 15 field sites in Colorado, Idaho, Montana, Nevada, Oregon, Utah, and Wyoming, built species-area relationships to quantify differences in forb species richness at sites, and used Principal Components Analysis, non-metric multidimensional scaling, and redundancy analysis to identify relationships among environmental variables and forb species richness and composition. We found that species richness was most strongly correlated with soil texture, while species composition was most related to climate. The combination of climate and soil texture influences water availability, which our results indicate has important consequences for forb species richness and composition, and suggests that climate change-induced modification of soil water availability may have important implications for plant species diversity in the future.     

Past,current, and future trends of red spiny lobster based on PCA with MaxEnt model in Galapagos Islands,Ecuador

In order to enhance in terms of accuracy and predict the modeling of the potential distribution of species, the integration of using principal components of environmental variables as input of maximum entropy (MaxEnt) has been proposed in this study. Principal components selected previously from the principal component analysis results performed in ArcGIS in the environmental variables was used as an input data of MaxEnt instead of raw data to model the potential distribution of red spiny lobster from the year 1997 to 2015 and for three different future scenarios 2020, 2050, and 2070. One set of six original environmental variables pertaining to the years 1997–2015 and one set of four variables for future scenarios were transformed independently into a single multiband raster in ArcGIS in order to select the variables whose eigenvalues explains more than 5% of the total variance with the purpose to use in the modeling prediction in MaxEnt. The years 1997 and 1998 were chosen to compare the accuracy of the model, showing better results using principal components instead of raw data in terms of area under the curve and partial receiver operating characteristic as well as better predictions of suitable areas. Using principal components as input of MaxEnt enhances the prediction of good habitat suitability for red spiny lobster; however, future scenarios suggest an adequate management by researches to elaborate appropriate guidelines for the conservation of the habitat for this valuable specie with face to the climate change.     

Evaluating the use of macroscale variables as proxies for local aquatic variables and to model stream fish distributions

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The impact of fossil stratigraphic ranges on tip-calibration,and the accuracy and precision of divergence time estimates

The molecular clock provides the only viable means of establishing realistic evolutionary timescales but it remains unclear how best to calibrate divergence time analyses. Calibrations can be applied to the tips and/or to the nodes of a phylogeny. Tip-calibration is an attractive approach since it allows fossil species to be included alongside extant relatives in molecular clock analyses. However, most fossil species are known from multiple stratigraphical horizons and it remains unclear how such age ranges should be interpreted to codify tip-calibrations. We use simulations and empirical data to explore the impact on precision and accuracy of different approaches to informing tip-calibrations. In particular, we focus on the effect of using tip-calibrations defined using the oldest vs youngest stratigraphic occurrences, the full stratigraphical range, as well as confidence intervals on these data points. The results of our simulations show that using different calibration approaches leads to different divergence-time estimates and demonstrate that concentrating tip-calibrations near the root of the dated phylogeny improves both precision and accuracy of estimated divergence times. Finally, our results indicate that the highest levels of accuracy and precision are achieved when fossil tips are calibrated based on the fossil occurrence from which the morphological data were derived. These trends were corroborated by analysis of an empirical dataset for Ursidae. Overall, we conclude that tip-dating analyses should, in particular, employ tip calibrations close to the root of the tree and they should be calibrated based on the age of the fossil used to inform the morphological data used in Total Evidence Dating.     

A biogeographic model of fire regimes in Australia: current and future implications

Aim Patterns of fire regimes across Australia exhibit biogeographic variation in response to four processes. Variations in area burned and fire frequency result from differences in the rates of ‘switching’ of biomass growth, availability to burn, fire weather and ignition. Therefore differing processes limit fire (i.e. the lowest rate of switching) in differing ecosystems. Current and future trends in fire frequency were explored on this basis. Location Case studies of forests (cool temperate to tropical) and woodlands (temperate to arid) were examined. These represent a broad range of Australian biomes and current fire regimes. Methods Information on the four processes was applied to each case study and the potential minimum length of interfire interval was predicted and compared to current trends. The potential effects of global change on the processes were then assessed and future trends in fire regimes were predicted. Results Variations in fire regimes are primarily related to fluctuations in available moisture and dominance by either woody or herbaceous plant cover. Fire in woodland communities (dry climates) is limited by growth of herbaceous fuels (biomass), whereas in forests (wet climates) limitation is by fuel moisture (availability to burn) and fire weather. Increasing dryness in woodland communities will decrease potential fire frequency, while the opposite applies in forests. In the tropics, both forms of limitation are weak due to the annual wet/dry climate. Future change may therefore be constrained. Main conclusions Increasing dryness may diminish fire activity over much of Australia (dominance of dry woodlands), though increases may occur in temperate forests. Elevated CO₂ effects may confound or reinforce these trends. The prognosis for the future fire regime in Australia is therefore uncertain.