皱边石杉内生真菌DNA提取有效方法比较

目的:优化确定适用于皱边石杉内生真菌DNA提取的有效方法,并评价其效果。方法:运用氯化苄改良法、CTAB改良法分别提取皱边石杉内生真菌菌丝体DNA。结果:氯化苄改良法可从17个内生真菌菌丝体中均获得了高质量的DNA,除5、13、14号生长缓慢的内生真菌其菌丝体DNA浓度≤60ng/μL,其余样品的DNA浓度均≥200ng/μL。而CTAB改良法仅适宜于平板培养菌落生长迅速、菌落疏松,发酵培养菌丝体产量高的1、2、3、9、10、12号菌株。结论:氯化苄改良法是适宜于皱边石杉内生真菌DNA提取的理想方法。     

Extraction of total RNA from leaves of Eucalyptus and other woody and herbaceous plants using sodium isoascorbate

Rapid extraction of total RNA from Eucalyptus leaves is difficult due to the high content of polyphenolics and polysaccharides. A rapid and simple method was developed by using an extraction buffer containing sodium isoascorbate at a concentration of 500 mM. This method consisted of one or two chloroform extractions, one acid guanidium-phenol-chloroform extraction, and isopropanol precipitation alone. The yields of the RNA fractions were 246-1750 micrograms/g fresh weight when leaves of Eucalyptus, five other woody plants, and four herbaceous plants were used as samples. The contamination of the RNA fractions by proteins and polysaccharides was very limited as judged spectrophotometrically. When the RNA fractions were subjected to agarose gel electrophoresis, intact rRNA bands were detected. The RNA fractions could be used for RT-PCR. These results indicate that our new method achieves a simple and rapid preparation of high-quality RNA from leaves of Eucalyptus and other plant species.     

水稻高光谱变化特征与叶绿素含量监测研究

叶绿素含量是评价水稻光合效率的重要指标,实时无损监测叶绿素含量对水稻生长诊断具有重要意义。以水稻P88S(绿叶)和黄1S(黄叶)为试验材料,分析高光谱指数与水稻叶绿素含量的关系,并构建冠层反射光谱与水稻叶绿素含量监测模型。研究结果表明:水稻不同叶色的冠层光谱反射率随着植株生长而不断变化,在绿叶材料P88S的502-711 nm和黄叶材料黄1S的487-716 nm可见光波长范围内,叶绿素含量与一阶微分光谱的相关系数呈极显著正相关。以P88S RVI(363,675)和黄1S DVI'(639,680)作为光谱参数,与叶绿素含量建立估算模型拟合效果最佳,说明利用高光谱技术结合一阶微分光谱的方法可以监测水稻叶绿素含量。     

An Efficient RNA Extraction Method for Estimating Gut Microbial Diversity by Polymerase Chain Reaction

An extraction method was developed to recover high-quality RNA from rumen digesta and mouse feces for phylogenetic analysis of metabolically active members of the gut microbial community. Four extraction methods were tested on different amounts of the same samples and compared for efficiency of recovery and purity of RNA. Trizol extraction after bead beating produced a higher quantity and quality of RNA than a similar method using phenol/chloroform. Dissociation solution produced a 1.5- to 2-fold increase in RNA recovery compared with phosphate-buffered saline during the dissociation of microorganisms from rumen digesta or fecal particles. The identity of metabolically active bacteria in the samples was analyzed by sequencing 87 amplicons produced using bacteria-specific 16S rDNA primers, with cDNA synthesized from the extracted RNA as the template. Amplicons representing the major phyla encountered in the rumen (Firmicutes, 43.7%; Proteobacteria, 28.7%; Bacteroidetes, 25.3%; Spirochea, 1.1%, and Synergistes, 1.1%) were recovered, showing that development of the RNA extraction method enables RNA-based analysis of metabolically active bacterial groups from the rumen and other environments. Interestingly, in rumen samples, about 30% of the sequenced random 16S rRNA amplicons were related to the Proteobacteria, providing the first evidence that this group may have greater importance in rumen metabolism than previously attributed by DNA-based analysis.     

Supercritical-fluid extraction of synthetic pyrethroids from wool

A stepwise approach was used to develop a supercritical fluid extraction (SFE) method for analysis of synthetic pyrethroids (SPs) on a wool matrix, commencing with a simple inert matrix to examine the solubility of the pyrethroids in the extraction fluid CO(2) and then extended to the real wool matrix. Chemometric approaches were used to determine the SFE optimum conditions. It was found that pyrethroids were readily extractable from an inert matrix over a wide range of pressure (170-350 atm) and at low temperature (<90 degrees C). Subambient hexane efficiently trapped the compounds from the depressurised fluid. Excessively high pressure and temperature resulted in poor trapping, isomerisation and possibly degradation of some components. With spiked wool samples method modifications focused on reducing the coextraction of grease, a bulk matrix component of raw wool. By using alumina (containing 8% moisture) and operating the extraction at 50 degrees C, 200 atm for 60 min, sufficiently clean extracts of pyrethroids suitable for gas chromatography-electron-capture detection analysis were obtained. The recoveries of all SPs were satisfactory (78-101%) over the range of 0.5-5 microg/g levels of these compounds. The precision of the entire analysis procedure was comparable to the conventional Soxhlet extraction method. Detection limits of some commonly used SPs for sheep treatment were also evaluated. Comparable results relative to those achieved by solvent extraction for incurred wool samples were obtained with a recovery of 81-85%. The results, however, suffered high uncertainties (R.S.D. approximately 19-24%) due to the small amount of wool sample taken in each extraction and the suspected inhomogeneity of the wool. Different persistences of cypermethrin isomers in wool were observed.     

农作物体内铅,镉,铜的化学形态研究

本文报道了农作物体内重金属存在的化学形态。用逐步提取法分析了生长在污染土壤上的水稻、小麦的根与叶。结果表明,在两种作物中,根部的铅以活性较低的醋酸可提取态与盐酸可提取态占优势,而叶中的铅以盐酸可提取态占优势。不论根部或叶部,在各种形态镉中,以氯化钠可提取镉所占比例较高,作用较重要。作物体内的铜活性较强,根部以乙醇可提取态占优势,叶中以水提取态占优势。各种结合形态的重金属迁移能力、毒性效应有显著差异。作物体内重金属化学形态特征与其表观毒性效应有密切联系。     

Gas chromatographic–mass spectrometric identification and quantitation of benzyl alcohol in serum after derivatization with perfluorooctanoyl chloride: a new derivative

Benzyl alcohol is commonly used as an antibacterial agent in a variety of pharmaceutical formulations. Several fatalities in neonates have been linked to benzyl alcohol poisoning. Most methods for measuring benzyl alcohol concentrations in serum utilize direct extraction followed by high-performance liquid chromatography. We describe here a novel derivatization of benzyl alcohol using perfluorooctanoyl chloride after extraction from human serum for analysis by gas chromatography–mass spectrometry (GC–MS). The derivative was eluted at a significantly higher temperature respective to underivatized molecule and the method was free from interferences from more volatile components in serum and hemolyzed specimens. Another advantage of this derivatization technique is the conversion of low-molecular-mass benzyl alcohol (M_r 108) to a high-molecular-mass derivative (M_r 504). The positive identification of benzyl alcohol can be achieved by observing a distinct molecular ion at m/z 504 as well as the base peak at m/z 91. Quantitation of benzyl alcohol in human serum can easily be achieved by using 3,4-dimethylphenol as an internal standard. The within run and between run precisions (using serum standard of benzyl alcohol: 25 mg/l) were 2.7% (mean=24.1, S.D.=0.66 mg/l, n=8) and 4.2% (mean=24.3, S.D.=1.03 mg/l, n=8), respectively. The assay was linear for the serum benzyl alcohol concentrations of 2 mg/l to 200 mg/l and the detection limit was 0.1 mg/l. We observed no carry-over (memory effect) problem in our assay as when 2 μl ethyl acetate was injected into the GC–MS system after analyzing serum specimens containing 200 mg/l of benzyl alcohol, we observed no peak for either benzyl alcohol or the internal standard in the total ion chromatogram.     

Overcoming the Difficulties in Collecting Apoplastic Fluid from Rice Leaves by the Infiltration-Centrifugation method

Physiological and biochemical studies on the leaf apoplast have been facilitated by the use of the infiltration-centrifugation technique to collect intercellular washing fluid (IWF). However, this technique has been difficult to implement in rice (Oryza sativa L.) for various reasons. We compared the collection efficiency of leaf IWF between two types of rice varieties (Indica and Japonica), as well as between rice and other species (spinach, snap bean and wheat). Although the extraction of IWF in most species took only 2-3 min, it took up to 35 min in rice. The difficulty in infiltration with rice was ascribed to the small stomatal aperture and hydrophobicity of the leaves. In this study, we have established an improved method for collecting IWF and determining the apoplastic air and water volumes in rice leaves. We have shortened the infiltration time to 8 min via the following improvements: (i) infiltration under outdoor shade in the daytime to prevent stomatal closure and a rise in temperature of the infiltration medium; (ii) soaking of leaves in a surfactant solution to decrease the leaf hydrophobicity; and (iii) continuous pressurization using a sealant injector to facilitate the infiltration. The rapid collection of IWF achieved using this technique will facilitate study of the leaf apoplast in rice.     

一种快速提取小麦叶片总RNA的方法

从植物组织中提取高质量的RNA是进行植物分子生物学研究的必要前提和关键.同种植物不同器官的组织由于组成分的差异,提取RNA的方法也存在不同的难点.在苯酚法和氯化锂沉淀法的基础上,改进并提出了一种适合小麦叶片总RNA的快速提取方法,消除了蛋白质、DNA、多糖、多酚等污染.该方法提取的小麦叶片总RNA,完整性好、纯度高,可用于RT-PCR、N orthern杂交、RACE等实验操作,而且简单经济、快速、实验结果稳定,重复性好,还适合富含多糖和脂质的植物组织总RNA的提取.     

Separation of polymeric tannins from white wine by a combination of 2-butanol extraction and column chromatography

A new procedure was developed for the separation of polymeric tannins from a high-tannin white table Koshu wine by extraction with organic solvent and adsorption chromatography. The wine was adjusted to pH 1.0, sodium chloride was added to give a final concentration of 12.5% NaCl, then phenolic compounds including phenolic acids and tannin phenolics were extracted with 2-butanol. About 95% of the total phenolics was extractable.Polymeric tannins were separated from the extract by chromatography on Bio-Gel P-2, which adsorbs polymeric tannins in the presence of 10% acetic acid-50% ethanol, and recovered quantitatively by subsequent elution with 50% acetone. The phenolic acids and flavonoid tannins of low molecular weight that were eluted first using 10% acetic acid-50% ethanol, and the tannin phenolics of high molecular weight subsequently eluted using 50% acetone, were both free of potassium and sodium ions.This method, including the extraction and chromatography, is useful for rough separation of polymeric tannins and other phenolics from white wines.     

提取方式对土壤和植物水分提取率的影响及其氢氧同位素分析

氢氧同位素示踪技术是研究土壤-作物-大气连续体(SPAC)水分循环的重要手段,而土壤水和作物水的提取方法是氢氧同位素研究最关键的一步。本文采用真空蒸馏和共沸蒸馏2种提取方法对不同含水量(35%、25%和15%)下的土壤(红粘土、红砂土和水稻土)和植物(橘树和水稻)茎叶的水分分别进行了提取,并对提取出的水分进行了氢氧稳定同位素的对比分析,旨在提出合适的提取方法。结果表明:真空蒸馏对土壤和植物水分提取率显著高于共沸蒸馏(P<0.001);土壤含水量和土壤类型对水分提取率影响不显著;而水稻水分提取率显著高于橘树(P<0.001),且叶的水分提取率显著高于茎(P<0.001)。真空蒸馏提取出土壤水分的δD和δ18O值与标准样的差异不显著,而共沸蒸馏下提取出土壤水分的δD与标准样差异显著(P<0.001),水稻叶和橘树叶的δD和δ18O值高于茎。研究表明,真空蒸馏比共沸蒸馏更适合土壤和植物水分的提取且其提取出的水分更能真实反映样品中氢氧同位素组成。     

RNA extraction from various recalcitrant plant tissues with a cethyltrimethylammonium bromide-containing buffer followed by an acid guanidium thiocyanate-phenol-chloroform treatment

High-quality total RNA was extracted using a cethyltrimethylammonium bromide-containing buffer followed by an acid guanidium thiocyanate-phenol-chloroform treatment from recalcitrant plant tissues such as tree leaves (pine, Norway spruce, ginkgo, Japanese cedar, rose), flowers (rose, Lotus japonicus) and storage tissues (seeds of Lotus japonicus and rice, sweet potato tuber, banana fruit). This protocol greatly reduced the time required for RNA extraction.     

大青杨叶片总RNA的快速提取方法

目的:寻求快速提取大青杨叶片总RNA的方法。方法:分别用改良CTAB法、改良SDS法、改良TRIzol法及某公司总RNA提取试剂盒提取大青杨叶片总RNA,并用紫外光谱分析、凝胶电泳方法对提取的总RNA进行鉴定。结果:用改良CTAB法和改良TRIzol法能有效地去除蛋白及多糖,提取到的总RNA纯度高,D260nm/D280nm分别为2.05和1.78,RNA的完整程度优于试剂盒法。结论:改良CTAB法为大青杨叶片总RNA的最佳提取方法。     

Quantification of indole-3-acetic acid and amino acid conjugates in rice by liquid chromatography-electrospray ionization-tandem mass spectrometry

A method for quantifying indole-3-acetic acid (IAA) and its conjugates with the six amino acids, Ala, -Asp, -Ile, -Glu, -Phe and -Val, in rice (Oryza sativa) by using high-performance liquid chromatography coupled with electrospray ionization and tandem mass spectrometry (HPLC-ESI-MS/MS) is described. Samples from the rice plant or callus were treated with 80% acetone in water containing 2.5 mM diethyl dithiocarbamate. Each extract was partially purified in C18 cartridge column for solid-phase extraction (SPE) and subjected to HPLC-ESI-MS/MS without converting the product. The detection limit was 3.8 fmol for IAA, and 0.4-2.9 fmol for the IAA amino acid conjugates. The method was applied to the analysis of IAA and its conjugates in rice seedlings, dehulled rice and calli, using 20-100 mg tissue samples.     

一种褐飞虱病原真菌的分子生物学鉴定

从田间褐飞虱Nilaparvata lugens( St(a)l)罹病虫体分离得到一株绿僵菌,以该菌为供试菌体,采用氯化苄法、CTAB法以及裂解液法分别提取了该菌的基因组DNA;以ITS1和ITS4为绿僵菌通用引物,对供试菌株的rDNA ITS序列进行PCR扩增、琼脂糖凝胶电泳检测和序列分析,并在核酸序列数据库中进行同...     

利用氯化苄提取适于分子生物学分析的真菌DNA

随着生物技术的飞速发展,更加需要简便、快速地提取高质量的DNA。以往报导的提取真菌DNA的方法大都采用液氮研磨或酶解破坏细胞壁和膜的方式,从而导致繁琐、复杂和费时的提取过程。根据氯化苄在弱碱条件下与多糖上的羟基反应形成醚从而使多糖长链断裂的事实,我们发展了一种全新的真菌DNA提取方法,该方法使氯化苄在pH9.0时与细胞壁多糖作用,破坏细胞壁,基因组DNA因而得以从细胞中释放出来。新方法具有简便、快速、价廉的优点,得到的DNA蛋白质污染少、质量较高、产量稳定。对该法提取的DNA作进一步的分子生物学分析,如限制性内切酶酶解、RFLP分析、RAPD扩增,都取得了令人满意的结果。利用氯化苄提取真菌DNA的研究,迄今在国际、国内均尚未见报道。     

利用氯化苄提取适于分子生物学分析的真菌 DNA

随着生物技术的飞速发展,更加需要简便、快速地提取高质量的DNA。以往报导的提取真菌DNA的方法大都采用液氮研磨或酶解破坏细胞壁和膜的方式,从而导致繁琐、复杂和费时的提取过程。根据氯化苄在弱碱条件下与多糖上的羟基反应形成醚从而使多糖长链断裂的事实,我们发展了一种全新的真菌DNA提取方法,该方法使氯化苄在pH9.0时与细胞壁多糖作用,破坏细胞壁,基因组DNA因而得以从细胞中释放出来。新方法具有简便、快速、价廉的优点,得到的DNA蛋白质污染少、质量较高、产量稳定。对该法提取的DNA作进一步的分子生物学分析,如限制性内切酶酶解、RFLP分析、RAPD扩增,都取得了令人满意的结果。利用氯化苄提取真菌DNA的研究,迄今在国际、国内均尚未见报道。     

新生隐球菌基因组DNA不同抽提方法的比较

目的 DNA是进行分子生物学研究的重要基础。在本研究中,我们建立了2种简单快速抽提基因组DNA的方法并可用作PCR扩增的模板。通过比较4种不同的DNA抽提方法以确定哪种更适合进行下一步的基因分析。方法这4种方法是:玻璃珠法,酶法,3%SDS法和氯化苄法。玻璃珠法是用玻璃珠在混漩器上剧烈振荡破碎细胞壁;3%SDS法是将细胞在含10mmol/LDTT的3%SDS溶液中加热,然后用5mmol/LKAc和异丙醇抽提,DNA的产量通过A260测定。结果 3%SDS溶解法、经典酶法、玻璃珠法和氯化苄法的DNA产量分别为0.4154±0.0367、0.8484±0.0756、1.2636±0.2040、0.4070±0.0339(g/L×108CFU/mL)。结论玻璃珠法是最敏感、重复性好、简单、费用合理的抽提方法 。