Mollusks in Phanerozoic marine communities: Implications from the analysis of global paleontological databases

Evolutionary history of three mollusk classes (Bivalvia, Gastropoda, and Cephalopoda), regarded as components of the Phanerozoic marine biota, is discussed based on the comparison of dynamics of quantitative parameters obtained from the analysis of the global paleontological databases. The main trends in the evolution of the role of mollusks in Phanerozoic marine ecosystems and relationships between the diversification of this group and biodiversity of paleocommunities are considered. Certain parameters show similarity between the diversity dynamics of mollusks and the whole marine biota, including the paleolatitudinal distribution of diversity. At the same time, mollusk classes differ considerably in certain aspects. The evolutionary history of Bivalvia, Gastropoda, and Cephalopoda was different and determined presumably by deep ecological divergence which occurred as early as the Early Paleozoic adaptive radiation. Bivalves and gastropods followed the trend of a gradual and constant increase in their role in marine communities; they are characterized by high and constantly growing duration of genera, high (and also growing) frequency in paleontological collections. Cephalopods show more chaotic macroevolutionary dynamics, relatively low mean duration of genera and low relative frequency.     

Hyperbolic growth of marine and continental biodiversity through the phanerozoic and community evolution

Among diverse models that are used to describe and interpret the changes in global biodiversity through the Phanerozoic, the exponential and logistic models (traditionally used in population biology) are the most popular. As we have recently demonstrated (Markov, Korotayev, 2007), the growth of the Phanerozoic marine biodiversity at genus level correlates better with the hyperbolic model (widely used in demography and macrosociology). Here we show that the hyperbolic model is also applicable to the Phanerozoic continental biota at genus and family levels, and to the marine biota at species, genus, and family levels. There are many common features in the evolutionary dynamics of the marine and continental biotas that imply similarity and common nature of the factors and mechanisms underlying the hyperbolic growth. Both marine and continental biotas are characterized by continuous growth of the mean longevity of taxa, by decreasing extinction and origination rates, by similar pattern of replacement of dominant groups, by stepwise accumulation of evolutionary stable, adaptable and "physiologically buffered" taxa with effective mechanisms of parental care, protection of early developmental stages, etc. At the beginning of the development of continental biota, the observed taxonomic diversity was substantially lower than that predicted by the hyperbolic model. We suggest that this is due, firstly, to the fact that, during the earliest stages of the continental biota evolution, the groups that are not preserved in the fossil record (such as soil bacteria, unicellular algae, lichens, etc.) played a fundamental role, and secondly, to the fact that the continental biota initially formed as a marginal portion of the marine biota, rather than a separate system. The hyperbolic dynamics is most prominent when both marine and continental biotas are considered together. This fact can be interpreted as a proof of the integrated nature of the biosphere. In the macrosociological models, the hyperbolic pattern of the world population growth arises from a non-linear second-order positive feedback between the demographic growth and technological development (more people - more potential inventors - faster technological growth - the carrying capacity of the Earth grows faster - faster population growth - more people - more potential inventors, and so on). Based on the analogy with macrosociological models and diverse paleontological data, we suggest that the hyperbolic character of biodiversity growth can be similarly accounted for by a non-linear second-order positive feedback between the diversity growth and community structure complexity. The feedback can work via two parallel mechanisms: 1) decreasing extinction rate (more taxa- higher alpha diversity, or mean number of taxa in a community - communities become more complex and stable - extinction rate decreases - more taxa, and so on) and 2) increasing origination rate (new taxa facilitate niche construction; newly formed niches can be occupied by the next "generation" of taxa). The latter possibility makes the mechanisms underlying the hyperbolic growth of biodiversity and human population even more similar, because the total ecospace of the biota is analogous to the "carrying capacity of the Earth" in demography. As far as new species can increase ecospace and facilitate opportunities for additional species entering the community, they are analogous to the "inventors" of the demographic models whose inventions increase the carrying capacity of the Earth. The hyperbolic growth of the Phanerozoic biodiverstiy suggests that "cooperative" interactions between taxa can play an important role in evolution, along with generally accepted competitive interactions. Due to this "cooperation", the evolution of biodiversity acquires some features of a self-accelerating process. Macroevolutionary "cooperation" reveals itself in: 1) increasing stability of communities that arises from alpha diversity growth; 2) ability of species to facilitate opportunities for additional species entering the community.     

CO2-forced evolution of plant gas exchange capacity and water-use efficiency over the Phanerozoic

The capacity of plants to fix carbon is ultimately constrained by two core plant attributes: photosynthetic biochemistry and the conductance to CO₂ diffusion from the atmosphere to sites of carboxylation in chloroplasts, predominantly stomatal conductance. Analysis of fossilized plant remains shows that stomatal density (number per unit area, D) and size (length by width, S) have fluctuated widely over the Phanerozoic Eon, indicating changes in maximum stomatal conductance. Parallel changes are likely to have taken place in leaf photosynthetic biochemistry, of which maximal rubisco carboxylation rate, V_cmax is a central element. We used measurements of S and D from fossilized plant remains spanning the last 400 Myr (most of the Phanerozoic), together with leaf gas exchange data and modeled Phanerozoic trends in atmospheric CO₂ concentration, [CO₂]_a, to calibrate a [CO₂]_a‐driven model of the long‐term environmental influences on S, D and V_cmax. We show that over the Phanerozoic large changes in [CO₂]_a forced S, D and V_cmax to co‐vary so as to reduce the impact of the change in [CO₂]_a on leaf CO₂ assimilation for minimal energetic cost and reduced nitrogen requirements. Underlying this is a general negative correlation between S and D, and a positive correlation between water‐use efficiency and [CO₂]_a. Furthermore, the calculated steady rise in stomatal conductance over the Phanerozoic is consistent with independent evidence for the evolution of plant hydraulic capacity, implying coordinated and sustained increase in gas exchange capacity and hydraulic capacity parallel long‐term increases in land plant diversity.     

Diversity dynamics of echinoderms and evolution of marine communities

A compound analysis of two global paleontological databases (Sepkoski??s database (SDB) and The Paleobiology Database) allowed the recognition of a number of previously undescribed trends in the evolution of the phylum Echinodermata. Paleozoic echinoderms, dominated by sessile epibenthic filter feeders, played an important role in benthic communities, especially in the Ordovician and Carboniferous. Paleozoic echinoderms typically showed an increased rate of genus renewal, which significantly decreases in the Meso-Cenozoic. After the P-T crisis the echinoderms became dominated by motile taxa, while the role of infaunal forms increased. During the global turnover in the benthic communities at the K-T boundary, which was accompanied by a sharp increase in the mean alpha-diversity, many marine organisms became inhabitants of much richer (compared to the Mesozoic) communities. However, of all echinoderms, this trend is observed only in crinoids. In contrast to most large taxa, echinoderms do not show positive correlation between the duration of genera and alpha-diversity of communities, which included these genera. During the Phanerozoic the geographical distribution of echinoderms showed a sharp paleolatitudinal gradient, i.e., each period was characterized by one paleolatitudinal zone with the maximum diversity of echinoderms, and the diversity rapidly decreasing to the north and to the south of this zone. The zone of the maximum diversity of echinoderms, like of entire marine biota, during the Phanerozoic gradually moved from the tropics of the southern hemisphere to the middle latitudes of the northern hemisphere.     

The dynamics of Phanerozoic marine animal diversity agrees with the hyperbolic growth model

Generic diversity dynamics of the Phanerozoic marine animals is far better described by the hyperbolic model, widely used in demography and macrosociology, than by the exponential and logistic models from population dynamics traditionally employed for this purpose. Exponential and logistic models imply zero influence of interactions between taxa on the dynamics of diversity, with the exception of competing for unoccupied ecological space, whereas the hyperbolic model implies non-linear second-order positive feedback in the development of the biota. The hyperbolic human population growth is caused by positive feedback between population size and the rate of technological and cultural development (the more individuals, the more inventors, the more rapid progress, the more rapid growth of the Earth's bearing capacity; the smaller death-rate, the more accelerated growth-rate of the population). Probably there is also non-linear second-order positive feedback between diversity and community structure (the more genera, the higher alpha-diversity, which is defined as average number of genera per community, the more complicated and stable, "buffered" communities, the greater "taxonomic capacity of the environment" and average duration of the existence of genera; extinction rate dencreases, biodiversity growth-rate increases). The simplest mathematical model of biodiversity dynamics based on this assumption is confirmed by empirical data on alpha-diversity dynamics. Progressive complexification of marine communities during the Phanerozoic is also confirmed by the growing evennes of generic abundance distribution in paleocommunities.     

Biostratigraphic subdivision and correlation of Uppermost Carboniferous/Lower Permian sediments in the Southern Alps: Fusulinoidean and condont faunas from the Carnic Alps (Austria/Italy), Karavanke Mountains (Slovenia), and Southern Urals (Russia)

Summary In order to establish a refined biostratigraphic subdivision and correlation of the Uppermost Carboniferous/Lower Permian deposits of the Southern Alps (Carnic Alps, Karavanke Mountains; Austria/Italy/Slovenia), two major microfossil groups (fusulinoideans, conodonts) were investigated within the same sample. The fusulinoidean species diversity (71 species, including five new species and three new subspecies) and generic composition were reviewed and complemented. Additionally, the data on fusulinoidean assemblages were supplemented by co-occurring conodont faunas (seven species). Accompanying studies on material from the type sections of the Southern Urals (Russia) were made to improve the biostratigraphic correlation with the Russian standard zonation and to discuss paleobiogeographical aspects of the faunal associations. An integrated microfacies analysis of the sampled material in the Southern Alps serves to evaluate the relationships between certain genera and specific microfacies types. The fusulinoidean fauna of the Lower “Pseudoschwagerina” Limestone is of late Gzhelian age. The Carboniferous/Permian boundary is close to the base of the Grenzland Formation, which covers the entire Asselian and a part of the Sakmarian. The Upper “Pseudoschwagerina” Limestone and Trogkofel Limestone are Lake Sakmarian to Artinskian. The studies sequences in the Karavanke Mountains. formerly known as “carbonate and clastic Trogkofel beds”, correlate to the Lower “Pseudoschwagerina” Limestone, respectively with parts of the Grenzland Formation. Due to the lithologic differences, new formation names (Dolzanova Soteska Fm., Born Fm.) were introduced for the so-called “Trogkofel” Limestone along the Dolzanova Soteska. Whereas late Gzhelian/Asselian fusulinoidean faunas of the Southern Alps correspond to the Southern Uralian faunas to a large extent, Sakmarian and Artinskian faunas reveal an increasing divergence in species and genus composition. Climatic as well as geographic barriers may have prevennted the dispersal of Paleotethyan taxa into the Southern Urals. Biostratigraphic correlation of Sakmarian to Artinskian deposits is therefore possible only on the basis of the sparse conodont faunas.     

Subtropical coral-reef associated sedimentary facies characterized by molluscs (Northern Bay of Safaga, Red Sea, Egypt)

Summary The shallow marine subtropical Northern Bay of Safaga is composed of a complex pattern of sedimentary facies that are generally rich in molluscs. Thirteen divertaken bulk-samples from various sites (reef slopes, sand between coral patches, muddy sand, mud, sandy seagrass, muddy seagrass, mangrove channel) at water depths ranging from shallow subtidal to 40m were investigated with regard to their mollusc fauna >1mm, which was separated into fragments and whole individuals. Fragments make up more than 88% of the total mollusc remains of the samples, and their proportions correspond to characteristics of the sedimentary facies. The whole individuals were differentiated into 622 taxa. The most common taxon,Rissoina cerithiiformis, represented more than 5% of the total mollusc content in the samples. The main part of the fauna consists of micromolluscs, including both small adults and juveniles. Based on the results of cluster-, correspondence-, and factor analyses the fauna was grouped into several associations, each characterizing a sedimentary facies: (1) “Rhinoclavis sordidula—Corbula erythraeensis-Pseudominolia nedyma association” characterizes mud. (2) “Microcirce sp.—Leptomyaria sp. association” characterizes muddy sand. (3)”Smaragdia spp.-Perrinia stellata—Anachis exilis—assemblage” characterizes sandy seagrass. (4) “Crenella striatissima—Rastafaria calypso—Cardiates-assemblage” characterizes muddy seagrass. (5) “Glycymeris spp.-Parvicardium sueziensis-Diala spp.-assemblage” characterizes sand between coral patches. (6) “Rissoina spp.-Triphoridae —Ostreoidea-assemblage” characterizes reef slopes. (7) “Potamides conicus—Siphonaria sp. 2—assemblage” characterizes the mangrove. The seagrass fauna is related to those of sand between coral patches and reef slopes with respect to gastropod assemblages, numbers of taxa and diversity indices, and to the muddy sand fauna on the basis of bivalve assemblages and feeding strategies of bivalves. The mangrove assemblage is related to those of sand between coral patches and the reef slope with respect to taxonomic composition and feeding strategies of bivalves, but has a strong relationship to those of the fine-grained sediments when considering diversity indices. Reef slope assemblages are closely related to that of sand between coral patches in all respects, except life habits of bivalves, which distincly separates the reef slope facies from all others.     

Phase change-related variations of dome shape in Eucalyptus urophylla × Eucalyptus grandis shoot apical meristems

Shoot apical meristem (SAM) domes derived from five different outdoor and in vitro sources of juvenile and mature Eucalyptus urophylla × Eucalyptus grandis akin genotypes were compared. Overall measurements of SAM dome height H and diameter D ranged from 2 to 35 μm and 20 to 80 μm, with significant differences according to the various physiological origins of plant material investigated. SAM domes from the mature trees “Mat” were taller than those from the rejuvenated ministock plants “Rej”; from the in vitro microcuttings “IVM” of the same clone and also from the in vitro juvenile seedlings “IVJ”, whereas outdoor seedlings “Juv” exhibited intermediate SAM dome height. SAM domes from the rejuvenated material “Rej”, from the in vitro mature “IVM” and juvenile “IVJ” origins were also narrower than those from the outdoor seedlings “Juv” and to lesser extent than those from the mature trees “Mat”. Overall, the mature source “Mat” displayed bigger and somehow sharper hemispherical domes than those from “Rej” and “Juv”, physiologically more juvenile, or those from the in vitro origins “IVM” and “IVJ” which looked flatter and smaller. SAM dome height, diameter D and H/D values varied also significantly according to the plastochron. More specifically, H, D, and H/D SAM differences between the five origins were not significant during the early plastochron phase corresponding to leaf initiation, to become more salient as leaf structures started to elongate and to differentiate. This was particularly obvious for mature tree “Mat” SAM dome shapes which showed at this stage much higher H/D values than the other SAM sources. A shape index S used for characterizing more accurately dome shape confirmed these trends. These observations provide additional arguments to the view that juvenility in trees becomes more and more time- and shoot-tip restricted as ageing increases in the course of time during the ontogenetical process and could be ultimately confined to the most organogenic phase of SAM, from which shoot characteristics derive.     

Community Structure and Function of Planktonic Crenarchaeota: Changes with Depth in the South China Sea

Marine Crenarchaeota represent a widespread and abundant microbial group in marine ecosystems. Here, we investigated the abundance, diversity, and distribution of planktonic Crenarchaeota in the epi-, meso-, and bathypelagic zones at three stations in the South China Sea (SCS) by analysis of crenarchaeal 16S rRNA gene, ammonia monooxygenase gene amoA involved in ammonia oxidation, and biotin carboxylase gene accA putatively involved in archaeal CO₂ fixation. Quantitative PCR analyses indicated that crenarchaeal amoA and accA gene abundances varied similarly with archaeal and crenarchaeal 16S rRNA gene abundances at all stations, except that crenarchaeal accA genes were almost absent in the epipelagic zone. Ratios of the crenarchaeal amoA gene to 16S rRNA gene abundances decreased ~2.6 times from the epi- to bathypelagic zones, whereas the ratios of crenarchaeal accA gene to marine group I crenarchaeal 16S rRNA gene or to crenarchaeal amoA gene abundances increased with depth, suggesting that the metabolism of Crenarchaeota may change from the epi- to meso- or bathypelagic zones. Denaturing gradient gel electrophoresis profiling of the 16S rRNA genes revealed depth partitioning in archaeal community structures. Clone libraries of crenarchaeal amoA and accA genes showed two clusters: the “shallow” cluster was exclusively derived from epipelagic water and the “deep” cluster was from meso- and/or bathypelagic waters, suggesting that niche partitioning may take place between the shallow and deep marine Crenarchaeota. Overall, our results show strong depth partitioning of crenarchaeal populations in the SCS and suggest a shift in their community structure and ecological function with increasing depth.     

Community effects following the deletion of a habitat-forming alga from rocky marine shores

Habitat-forming species increase spatial complexity and alter local environmental conditions, often facilitating a diversified assemblage of plants and animals. Removal of dominant species, therefore, can potentially lead to pronounced changes in diversity and community structure through a series of negative and positive interactions involving several components of the community. Here we test community responses to the deletion of the dominant, canopy-forming alga Hormosira banksii from the mid-intertidal zone of wave-protected rocky shores in southern New Zealand. This species was removed in winter (July) from three 3×3-m areas at each of two platforms (Kaikoura and Moeraki) on the east coast of the South Island. Initially, 59 taxa occurred in stands, but there were only four algal species with greater than 5% cover and three mobile invertebrate species with more than five individuals per 0.25 m². By 6 months after Hormosira removal, most fucoid and coralline algae had burned off, and there were blooms of ephemeral algae in the removal plots, but almost no change within controls. After 2 years, diversity declined by 44% relative to controls at Kaikoura and 36% at Moeraki, and the amount of bare space had increased by tenfold at Kaikoura and twofold at Moeraki. Few sessile or mobile invertebrates were present. Recruitment of Hormosira occurred after 14 months in the removal plots. At this time, a “press” disturbance was initiated into one half of each removal plot to test the effects of continued removal of Hormosira on diversity. Similar “end-points” of the control and “press” removal plots were not reached after 2 years, and even after Hormosira recruitment into the original “pulse” experiment there was little recovery of the community. In this mid-intertidal system with considerable thermal stress, and perhaps in others with few perennial species, diversity and community structure can critically depend on positive associations with a single dominant species.Electronic Supplementary Material Supplementary material is available for this article at and is accessible for authorized users.     

Hidden treatments in ecological experiments: re-evaluating the ecosystem function of biodiversity

Interactions between biotic and abiotic processes complicate the design and interpretation of ecological experiments. Separating causality from simple correlation requires distinguishing among experimental treatments, experimental responses, and the many processes and properties that are correlated with either the treatments or the responses, or both. When an experimental manipulation has multiple components, but only one of them is identified as the experimental treatment, erroneous conclusions about cause and effect relationships are likely because the actual cause of any observed response may be ignored in the interpretation of the experimental results. This unrecognized cause of an observed response can be considered a “hidden treatment.” Three types of hidden treatments are potential problems in biodiversity experiments: (1) abiotic conditions, such as resource levels, or biotic conditions, such as predation, which are intentionally or unintentionally altered in order to create differences in species numbers for “diversity” treatments; (2) non-random selection of species with particular attributes that produce treatment differences that exceed those due to “diversity” alone; and (3) the increased statistical probability of including a species with a dominant negative or positive effect (e.g., dense shade, or nitrogen fixation) in randomly selected groups of species of increasing number or “diversity.” In each of these cases, treatment responses that are actually the result of the “hidden treatment” may be inadvertently attributed to variation in species diversity. Case studies re-evaluating three different types of biodiversity experiments demonstrate that the increases found in such ecosystem properties as productivity, nutrient use efficiency, and stability (all of which were attributed to higher levels of species diversity) were actually caused by “hidden treatments” that altered plant biomass and productivity. Received: 16 December 1996 / Accepted: 2 March 1997     

Evolution of angiosperm seed disperser mutualisms: the timing of origins and their consequences for coevolutionary interactions between angiosperms and frugivores

The origins of interactions between angiosperms and fruit‐eating seed dispersers have attracted much attention following a seminal paper on this topic by Tiffney (1984). This review synthesizes evidence pertaining to key events during the evolution of angiosperm–frugivore interactions and suggests some implications of this evidence for interpretations of angiosperm–frugivore coevolution. The most important conclusions are: (i) the diversification of angiosperm seed size and fleshy fruits commenced around 80 million years ago (Mya). The diversity of seed sizes, fruit sizes and fruit types peaked in the Eocene around 55 to 50 Mya. During this first phase of the interaction, angiosperms and animals evolving frugivory expanded into niche space not previously utilized by these groups, as frugivores and previously not existing fruit traits appeared. From the Eocene until the present, angiosperm–frugivore interactions have occurred within a broad frame of existing niche space, as defined by fruit traits and frugivory, motivating a separation of the angiosperm–frugivore interactions into two phases, before and after the peak in the early Eocene. (ii) The extinct multituberculates were probably the most important frugivores during the early radiation phase of angiosperm seeds and fleshy fruits. Primates and rodents are likely to have been important in the latter part of this first phase. (iii) Flying frugivores, birds and bats, evolved during the second phase, mainly during the Oligocene and Miocene, thus exploiting an existing diversity of fleshy fruits. (iv) A drastic climate shift around the Eocene–Oligocene boundary (around 34 Mya) resulted in more semi‐open woodland vegetation, creating patchily occurring food resources for frugivores. This promoted evolution of a ‘flying frugivore niche’ exploited by birds and bats. In particular, passerines became a dominant frugivore group worldwide. (v) Fleshy fruits evolved at numerous occasions in many angiosperm families, and many of the originations of fleshy fruits occurred well after the peak in the early Eocene. (vi) During periods associated with environmental change altering coevolutionary networks and opening of niche space, reciprocal coevolution may result in strong directional selection formative for both fruit and frugivore evolution. Further evidence is needed to test this hypothesis. Based on the abundance of plant lineages with various forms of fleshy fruits, and the diversity of frugivores, it is suggested that periods of rapid coevolution in angiosperms and frugivores occurred numerous times during the 80 million years of angiosperm–frugivore evolution.     

An Assessment of the Impact of Chromium-Amended Sediment on a Marine Nematode Assemblage Using Microcosm Bioassays

Microcosms were used to assess the impact of chromium on free-living marine nematodes. Nematodes were exposed to three chromium concentrations (500 ppm (dm, dry mass), 800 ppm (dm) and 1,300 ppm (dm)), and effects were examined after 4 weeks. Results showed significant differences between univariate measures of control nematodes and those from medium- and high-chromium microcosms. Most, decreased significantly with increasing level of chromium contamination. The medium-chromium treatment seems to be the minimal concentration that could has a negative effect on nematodes. Results from multivariate analyses demonstrated that responses of nematode species to chromium treatments were varied: Leptonemella aphanothecae was eliminated at all doses tested and seemed to be intolerant species to chromium; Daptonema normandicum and Sabatieria longisetosa which significantly increased at 500 ppm chromium (dm) appeared to be “opportunistic” species at this dose whereas the two Bathylaimus species (Bathylaimus capacosus and Bathylaimus tenuicaudatus) which increased at all the doses tested seemed to be “chromium resistant”. As we think such “opportunistic” and “resistant” species could be used as sensitive indicators of unsafe marine food. The use of microcosms has allowed the effects of the chromium on nematodes to be assessed individually, which was not possible in the field.     

Direct use values and passive use values: implications for conservation of large carnivores

We made a quantitative analysis of the responses of urban and rural residents in Sweden to arguments supporting and opposing conservation of large carnivores. The most important arguments in favour of conservation were: “I want them [the large carnivores] to exist in Sweden, even if I will never see any of them”, “Sweden should share the responsibility of conserving the large carnivores” and “We owe it [conservation of large carnivores] to future generations”. We found only small differences between rural and urban residents. For arguments opposing conservation, the difference between rural and urban areas was slightly greater. The most important arguments opposing conservation of large carnivores were: “They may have serious negative impact on livestock farming”, “They may have serious negative impact on reindeer husbandry” and “May inflict suffering on injured livestock”. We conclude that there seems to be less support for direct use values such as hunting, ecotourism or just experiencing large carnivores, this may imply that the minimum viable population size can be used as a long-term management goal for large carnivore populations, possibly with an exception for bears. We also conclude that a separate conservation or management plan is needed for each species, since the conflicts with human interests vary greatly between the different carnivore species.     

Ecological dominance and the final sprint in hominid evolution

In contrast to many other models of human evolution the “balance of power” theory of Alexander has a clear answer to the question why a runaway selection process for unique social and moral capacities occurred in our ancestry only and not in other species: “ecological dominance” is hypothesized to have diminished the effects of “extrinsic” forces of natural selection such that withinspecies, intergroup competition increased (Alexander, 1989). Alexander seems to be wrong, however, in his claim that already the common HUCHIBO (Humans, Chimps, Bonobo's)-ancestor has crossed the ecological dominance barrier. In this paper an adapted version of Alexander's model is presented and several different ways are proposed to make this adapted version testable. A preliminary survey of the available paleontological and paleoecological data suggests that there is some evidence of a less vulnerable position towards predators in earlyHomo and that there are clear signs related to a crossing of the ecological dominance barrier inHomo sapiens sapiens.     

Paleoecology of Pennsylvanian phylloid algal buildups in south Guizhou,China

Pennsylvanian phylloid algal reefs are widespread and well exposed in south Guizhou, China. Here we report on reefs ranging from 2 to 8 m thickness and 30–50 m lateral extension. Algae, the main components, display a wide spectrum of growth forms, but are commonly cyathiform (cup-shaped) and leaf-like (undulate plates). The algal reef facies is dominated by boundstone. Algal thalli form a dense carpet whose framework pores are filled with marine cement and peloidal micrite. The peloidal matrix is dense, partly laminated or clotted with irregular surfaces and often gravity defying. Algal reefs in Guizhou differ from examples reported to date by the high biodiversity of organisms other than phylloids: e.g., the intergrowth of algae with corals (some of which are twice the size of algal thalli) and numerous large brachiopods. This contrasts to previous views that phylloid algal “meadows” dominated the actual seafloor, excluding other biota. Also, the pervasive marine cements (up to 50%) including botryoidal cement are noteworthy. Algal reefs developed at platform margins, a depositional environment similar to that of modern Halimeda mounds in Java, Australia and off Bahamas, and to that of time-equivalent examples reported from the Canadian Arctic Archipelago. Whereas nutrients appear decisive in the growth of Halimeda reefs, algal reefs reported herein seemingly grew under conditions of low nutrient levels. Overall, algal reefs in Guizhou challenge previous views on growth forms, diversity patterns, and depositional environments and add to the spectrum of these partly puzzling biogenic structures.     

Responses of mobile epifauna to small-scale seagrass patchiness: is fragmentation important?

Habitat fragmentation is a process involving splitting of continuous habitats into smaller, and more isolated habitat patches. To assess the effects of small-scale habitat patchiness and isolation without the confounding effect of habitat loss on benthic macrofauna, two field experiments were conducted in the Archipelago Sea, SW Finland. Using artificial seagrass units (ASUs) we contrasted continuous patches (“C”) with fragmented patches (“F”) of the same combined area as the continuous patches. The fragmentation treatment involved two isolation distances (0.5 and 3.0 m) between the ASUs (“F 0.5”) and (“F 3.0”). This design was repeated in two consecutive experiments where the patch area was 0.25 and 0.0625 m², respectively. Mobile epifauna were allowed to colonize patches for 12 days in both experiments. In both experiments, the total epifaunal density was significantly higher in the “F 0.5” treatment than in the “C” treatment, and the three dominant taxa showed positive or neutral responses to the habitat configuration. No fragmentation effect on the number of species was detected in either of the experiments, but fragmentation had a negative effect on the epifaunal diversity (Shannon’s H′) in the experiment with the largest patch area. Epifaunal diversity was significantly lower in “F 3.0” treatment than in “C” or “F 0.5” treatments in the first experiment, indicating stronger effect of isolation instead of fragmentation per se. Edge effects were indirectly tested by comparing epifaunal densities with patch edge:area ratios. The results suggest that edge effects may have a more important role than patch size for the total densities of epifaunal taxa, and that small, isolated patches have equal or higher habitat value compared to larger fragments.     

Apomorphy-based definition also pinpoints a node, and PhyloCode names prevent effective communication

Acceptable methods of defining taxon (or clade) names in the draft PhyloCode, or so-called phylogenetic nomenclature, are “node based,” “stem based,” and “apomorphy based.” All of them define a clade name by pinpointing a node; whereas node-based and stem-based definitions require two or more taxon “specifiers” to define names, an apomorphy-based definition requires two specifiers of different types; namely, a single-taxon specifier and a character specifier. The taxon specifier in an apomorphy-based definition is completely different from the “type” in the Linnaean system. Taxon (or clade) names in the PhyloCode are characterized in two entirely different manners: One is a name that does not change, either in its orthography or in the contents of the taxon referred to by it (or its meaning) over time; the other is a name that is just like a pure mark and thus has no meaning. Communication through such PhyloCode names is very ineffective or impossible.     

Culturable Fungi of Stored ‘Golden Delicious’ Apple Fruits: A One-Season Comparison Study of Organic and Integrated Production Systems in Switzerland

The effects of organic and integrated production systems on the culturable fungal microflora of stored apple fruits from five matched pairs of certified organic and integrated ‘Golden Delicious’ farms were studied at five representative production sites in Switzerland. Isolated fungi were identified morphologically. Colonization frequency (percentage of apples colonized), abundance (colony numbers), and diversity (taxon richness) were assessed for each orchard. The standard quality of the stored fruits was comparable for both organic and integrated apples and complied with national food hygiene standards. Yeasts (six taxa) and the yeast-like fungus Aureobasidium pullulans were the dominant epiphytes, filamentous fungi (21 taxa) the dominant endophytes. The most common fungi occurred at all sites and belonged to the “white” and “pink” yeasts, yeast-like A. pullulans, filamentous fungi Cladosporium spp., Alternaria spp., and sterile filamentous fungi. Canonical correspondence analysis of the total fungal community revealed a clear differentiation among production systems and sites. Compared to integrated apples, organic apples had significantly higher frequencies of filamentous fungi, abundance of total fungi, and taxon diversity. The effects of the production system on the fungal microflora are most likely due to the different plant protection strategies. The incidence of potential mycotoxin producers such as Penicillium and Alternaria species was not different between production systems. We suggest that higher fungal diversity may generally be associated with organic production and may increase the level of beneficial and antagonistically acting species known for their potential to suppress apple pathogens, which may be an advantage to organic apples, e.g., in respect to natural disease control.